mRNA_59 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|54592
Unique NamemRNA_59
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|54592 vs. uniprot
Match: A0A835YXY5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXY5_9STRA)

HSP 1 Score: 297 bits (760), Expect = 5.970e-96
Identity = 151/151 (100.00%), Postives = 151/151 (100.00%), Query Frame = 2 
Query:    5 MHVLEIRKQMLSPGHAEIVEAIYNVAIMHHALGELVNAECRFREALEVKWESQTVKLLTGLGEVLKTKGSFQAAEQCFRSALDAFTQLHMPANRAIMSTKHYLGILLYRRDQSVEAEMLLREVLEFREKELTKTHRDTAATYDALANLCKA 457
            MHVLEIRKQMLSPGHAEIVEAIYNVAIMHHALGELVNAECRFREALEVKWESQTVKLLTGLGEVLKTKGSFQAAEQCFRSALDAFTQLHMPANRAIMSTKHYLGILLYRRDQSVEAEMLLREVLEFREKELTKTHRDTAATYDALANLCKA
Sbjct:    1 MHVLEIRKQMLSPGHAEIVEAIYNVAIMHHALGELVNAECRFREALEVKWESQTVKLLTGLGEVLKTKGSFQAAEQCFRSALDAFTQLHMPANRAIMSTKHYLGILLYRRDQSVEAEMLLREVLEFREKELTKTHRDTAATYDALANLCKA 151
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BLAST of jgi.p|Trimin1|54592 vs. uniprot
Match: A0A835YV42_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YV42_9STRA)

HSP 1 Score: 293 bits (749), Expect = 2.140e-86
Identity = 150/152 (98.68%), Postives = 151/152 (99.34%), Query Frame = 2 
Query:    2 YMHVLEIRKQMLSPGHAEIVEAIYNVAIMHHALGELVNAECRFREALEVKWESQTVKLLTGLGEVLKTKGSFQAAEQCFRSALDAFTQLHMPANRAIMSTKHYLGILLYRRDQSVEAEMLLREVLEFREKELTKTHRDTAATYDALANLCKA 457
            YMHVLEIRKQMLSPGHAEIVEAIYNVAIMHHALGELVNAECRFREALEVK ESQTVKLLTGLGEVLKTKGSFQAAEQCFRSALDAFTQLHMPANRAIMSTKHYLGILLYRRDQSVEAEMLLREVLEFREKELTKTHRDTAATYDALA+LCKA
Sbjct:  914 YMHVLEIRKQMLSPGHAEIVEAIYNVAIMHHALGELVNAECRFREALEVKLESQTVKLLTGLGEVLKTKGSFQAAEQCFRSALDAFTQLHMPANRAIMSTKHYLGILLYRRDQSVEAEMLLREVLEFREKELTKTHRDTAATYDALADLCKA 1065
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|54592 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A835YXY5_9STRA5.970e-96100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YV42_9STRA2.140e-8698.68Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_3contigContig_3:408545..409594 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|54592|CE54591_52
Hectar predicted targeting categoryother localisation
TranscriptId54914
TrackFilteredModels1
ProteinId54592
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|54592gene_59Tribonema minus UTEX_B_3156 geneContig_3 408545..409594 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_59_1exon_59_1Tribonema minus UTEX_B_3156 exonContig_3 408545..409594 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_59UTR5_59Tribonema minus UTEX_B_3156 five_prime_UTRContig_3 408545..408548 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_59CDS_59Tribonema minus UTEX_B_3156 CDSContig_3 408549..409541 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_59UTR3_59Tribonema minus UTEX_B_3156 three_prime_UTRContig_3 409542..409594 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|54592Trimin1|54592|CE54591_52Tribonema minus UTEX_B_3156 polypeptideContig_3 408549..409541 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_59 ID=mRNA_59|Name=jgi.p|Trimin1|54592|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1050bp|location=Sequence derived from alignment at Contig_3:408545..409594+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GTACATGCATGTGCTCGAAATCCGAAAGCAGATGTTGAGCCCCGGGCATG
CAGAAATAGTGGAGGCGATCTATAACGTCGCCATAATGCATCATGCGCTT
GGCGAGTTGGTCAACGCAGAATGCCGGTTCAGGGAAGCCTTAGAGGTCAA
ATGGGAGTCACAGACAGTCAAACTACTGACCGGCCTGGGTGAGGTCTTGA
AAACAAAGGGCAGCTTTCAGGCCGCAGAGCAGTGCTTCAGATCAGCGCTG
GACGCTTTTACACAGCTGCACATGCCGGCAAATCGTGCCATCATGTCAAC
AAAACACTACCTTGGTATTCTTCTTTACAGAAGAGACCAGAGTGTGGAGG
CGGAGATGCTGTTGCGGGAAGTGCTAGAGTTCAGAGAGAAGGAGCTCACC
AAGACACATCGGGACACAGCTGCGACATATGATGCCCTTGCTAATTTGTG
CAAAGCTCAGGGCAGGTTCGCAGAGGCAGAAGAGTTGTACCAGGCAGCGC
TGGACGTCAGGGTAGGGGTGCTGGGAGAATGGCACGGCGACACGGCCTCG
ACATATAACAATTTCGCCAATCTCCGCAGAGAGCAGTGCAGGTTCCCAGA
GGCGCGGGACATGTACGAAAAGGCACTGAGATACCGACTGGTTGTACTAC
CACCCAATCATCCTGAAACGGCGTGTTCGTACAACAACATGGCCCAGTGT
TACAGAGATCAGGGTGACCTAGAGGAAGCGAAACGGTGCGTTGAGATTGC
ACTTGCCATCAGAAAGAAACAGCTGGACCCGAACAACGCAGAAACAGCTT
CGTCGCTAGACACTCTGGCAGACATCCTGCAAGCTCAGGGAAACATGGAA
CAAGCAACTCAACGGTACAATAATGCTCTTTGCATGAGGCAGACTGTGCT
AGGTGTGAATCACACATTGACTGTAGAGTCAGTCAACAAACTCGCTTCTC
ATCTCAAGAGAGTGCAGGAATGTGGGAAGAGCTGCCTCATTGTATAAGTG
CGCCCTTGACGTTTGCGACGAGGTGCAGGGCCCAAAGTGTCTAAACAGGG
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protein sequence of jgi.p|Trimin1|54592

>Trimin1|54592|CE54591_52 ID=Trimin1|54592|CE54591_52|Name=jgi.p|Trimin1|54592|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=331bp
MHVLEIRKQMLSPGHAEIVEAIYNVAIMHHALGELVNAECRFREALEVKW
ESQTVKLLTGLGEVLKTKGSFQAAEQCFRSALDAFTQLHMPANRAIMSTK
HYLGILLYRRDQSVEAEMLLREVLEFREKELTKTHRDTAATYDALANLCK
AQGRFAEAEELYQAALDVRVGVLGEWHGDTASTYNNFANLRREQCRFPEA
RDMYEKALRYRLVVLPPNHPETACSYNNMAQCYRDQGDLEEAKRCVEIAL
AIRKKQLDPNNAETASSLDTLADILQAQGNMEQATQRYNNALCMRQTVLG
VNHTLTVESVNKLASHLKRVQECGKSCLIV*
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mRNA from alignment at Contig_3:408545..409594+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_59 ID=mRNA_59|Name=jgi.p|Trimin1|54592|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1050bp|location=Sequence derived from alignment at Contig_3:408545..409594+ (Tribonema minus UTEX_B_3156 )
GTACATGCATGTGCTCGAAATCCGAAAGCAGATGTTGAGCCCCGGGCATG
CAGAAATAGTGGAGGCGATCTATAACGTCGCCATAATGCATCATGCGCTT
GGCGAGTTGGTCAACGCAGAATGCCGGTTCAGGGAAGCCTTAGAGGTCAA
ATGGGAGTCACAGACAGTCAAACTACTGACCGGCCTGGGTGAGGTCTTGA
AAACAAAGGGCAGCTTTCAGGCCGCAGAGCAGTGCTTCAGATCAGCGCTG
GACGCTTTTACACAGCTGCACATGCCGGCAAATCGTGCCATCATGTCAAC
AAAACACTACCTTGGTATTCTTCTTTACAGAAGAGACCAGAGTGTGGAGG
CGGAGATGCTGTTGCGGGAAGTGCTAGAGTTCAGAGAGAAGGAGCTCACC
AAGACACATCGGGACACAGCTGCGACATATGATGCCCTTGCTAATTTGTG
CAAAGCTCAGGGCAGGTTCGCAGAGGCAGAAGAGTTGTACCAGGCAGCGC
TGGACGTCAGGGTAGGGGTGCTGGGAGAATGGCACGGCGACACGGCCTCG
ACATATAACAATTTCGCCAATCTCCGCAGAGAGCAGTGCAGGTTCCCAGA
GGCGCGGGACATGTACGAAAAGGCACTGAGATACCGACTGGTTGTACTAC
CACCCAATCATCCTGAAACGGCGTGTTCGTACAACAACATGGCCCAGTGT
TACAGAGATCAGGGTGACCTAGAGGAAGCGAAACGGTGCGTTGAGATTGC
ACTTGCCATCAGAAAGAAACAGCTGGACCCGAACAACGCAGAAACAGCTT
CGTCGCTAGACACTCTGGCAGACATCCTGCAAGCTCAGGGAAACATGGAA
CAAGCAACTCAACGGTACAATAATGCTCTTTGCATGAGGCAGACTGTGCT
AGGTGTGAATCACACATTGACTGTAGAGTCAGTCAACAAACTCGCTTCTC
ATCTCAAGAGAGTGCAGGAATGTGGGAAGAGCTGCCTCATTGTATAAGTG
CGCCCTTGACGTTTGCGACGAGGTGCAGGGCCCAAAGTGTCTAAACAGGG
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Coding sequence (CDS) from alignment at Contig_3:408545..409594+

>mRNA_59 ID=mRNA_59|Name=jgi.p|Trimin1|54592|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=993bp|location=Sequence derived from alignment at Contig_3:408545..409594+ (Tribonema minus UTEX_B_3156 )
ATGCATGTGCTCGAAATCCGAAAGCAGATGTTGAGCCCCGGGCATGCAGA
AATAGTGGAGGCGATCTATAACGTCGCCATAATGCATCATGCGCTTGGCG
AGTTGGTCAACGCAGAATGCCGGTTCAGGGAAGCCTTAGAGGTCAAATGG
GAGTCACAGACAGTCAAACTACTGACCGGCCTGGGTGAGGTCTTGAAAAC
AAAGGGCAGCTTTCAGGCCGCAGAGCAGTGCTTCAGATCAGCGCTGGACG
CTTTTACACAGCTGCACATGCCGGCAAATCGTGCCATCATGTCAACAAAA
CACTACCTTGGTATTCTTCTTTACAGAAGAGACCAGAGTGTGGAGGCGGA
GATGCTGTTGCGGGAAGTGCTAGAGTTCAGAGAGAAGGAGCTCACCAAGA
CACATCGGGACACAGCTGCGACATATGATGCCCTTGCTAATTTGTGCAAA
GCTCAGGGCAGGTTCGCAGAGGCAGAAGAGTTGTACCAGGCAGCGCTGGA
CGTCAGGGTAGGGGTGCTGGGAGAATGGCACGGCGACACGGCCTCGACAT
ATAACAATTTCGCCAATCTCCGCAGAGAGCAGTGCAGGTTCCCAGAGGCG
CGGGACATGTACGAAAAGGCACTGAGATACCGACTGGTTGTACTACCACC
CAATCATCCTGAAACGGCGTGTTCGTACAACAACATGGCCCAGTGTTACA
GAGATCAGGGTGACCTAGAGGAAGCGAAACGGTGCGTTGAGATTGCACTT
GCCATCAGAAAGAAACAGCTGGACCCGAACAACGCAGAAACAGCTTCGTC
GCTAGACACTCTGGCAGACATCCTGCAAGCTCAGGGAAACATGGAACAAG
CAACTCAACGGTACAATAATGCTCTTTGCATGAGGCAGACTGTGCTAGGT
GTGAATCACACATTGACTGTAGAGTCAGTCAACAAACTCGCTTCTCATCT
CAAGAGAGTGCAGGAATGTGGGAAGAGCTGCCTCATTGTATAA
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