mRNA_5880 (mRNA) Tribonema minus UTEX_B_3156
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Overview
Homology
BLAST of jgi.p|Trimin1|347596 vs. uniprot
Match: A0A836CL75_9STRA (SET domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CL75_9STRA) HSP 1 Score: 879 bits (2270), Expect = 0.000e+0 Identity = 455/455 (100.00%), Postives = 455/455 (100.00%), Query Frame = 1
Query: 1 MRLGRWEEAMVEAIGPKFGQRGGAKWKFAVGTYMLEMKTYEECQAVIEKIKRAAAEHMAPKRARLQTPACDKMVGPLRIGACGAKGRGLLATRDVKLGEVLMVSEPLAVTDADPSQFTTIGLLTGRLVEAVTDAXXXXXXXXXXXXXXXXXVVRSCPLELPRLLALGDGSGSHDNDNTPDIRLYSDNAFAEVESGRMRPGPNEYLYGQYYLPQITKVVEANRVQNRRDGSSSHIQRSTALYLLPSLINHSCLPNAAQVFVGNTLVITAARPIMAGEEVTIQYFDVLTTLQERQRMSGDAFTCACERCRFEARLGSLAEAFMAHAVNSIAPVWQRVTSPDRATAEPAARDQAMWLRASLFKVTETVLRCFLCVDSVDRLVLKLLKYVVTIISSTCPASMDHAVWARQGWLAATELCGADGEETQTWRDALIHVGQLRYNNIPDFVWDGSTDNDVCY 1365
MRLGRWEEAMVEAIGPKFGQRGGAKWKFAVGTYMLEMKTYEECQAVIEKIKRAAAEHMAPKRARLQTPACDKMVGPLRIGACGAKGRGLLATRDVKLGEVLMVSEPLAVTDADPSQFTTIGLLTGRLVEAVTDAXXXXXXXXXXXXXXXXXVVRSCPLELPRLLALGDGSGSHDNDNTPDIRLYSDNAFAEVESGRMRPGPNEYLYGQYYLPQITKVVEANRVQNRRDGSSSHIQRSTALYLLPSLINHSCLPNAAQVFVGNTLVITAARPIMAGEEVTIQYFDVLTTLQERQRMSGDAFTCACERCRFEARLGSLAEAFMAHAVNSIAPVWQRVTSPDRATAEPAARDQAMWLRASLFKVTETVLRCFLCVDSVDRLVLKLLKYVVTIISSTCPASMDHAVWARQGWLAATELCGADGEETQTWRDALIHVGQLRYNNIPDFVWDGSTDNDVCY
Sbjct: 1 MRLGRWEEAMVEAIGPKFGQRGGAKWKFAVGTYMLEMKTYEECQAVIEKIKRAAAEHMAPKRARLQTPACDKMVGPLRIGACGAKGRGLLATRDVKLGEVLMVSEPLAVTDADPSQFTTIGLLTGRLVEAVTDAXXXXXXXXXXXXXXXXXVVRSCPLELPRLLALGDGSGSHDNDNTPDIRLYSDNAFAEVESGRMRPGPNEYLYGQYYLPQITKVVEANRVQNRRDGSSSHIQRSTALYLLPSLINHSCLPNAAQVFVGNTLVITAARPIMAGEEVTIQYFDVLTTLQERQRMSGDAFTCACERCRFEARLGSLAEAFMAHAVNSIAPVWQRVTSPDRATAEPAARDQAMWLRASLFKVTETVLRCFLCVDSVDRLVLKLLKYVVTIISSTCPASMDHAVWARQGWLAATELCGADGEETQTWRDALIHVGQLRYNNIPDFVWDGSTDNDVCY 455
BLAST of jgi.p|Trimin1|347596 vs. uniprot
Match: A0A087HR35_ARAAL (SET domain-containing protein n=2 Tax=Arabis TaxID=50451 RepID=A0A087HR35_ARAAL) HSP 1 Score: 102 bits (255), Expect = 3.070e-19 Identity = 76/256 (29.69%), Postives = 126/256 (49.22%), Query Frame = 1
Query: 190 RLQTPACDKMVGPLRIGACGAKGRGLLATRDVKLGEVLMVSEPLA----VTDADPSQFTTIGLLTGRLVEAVTDAXXXXXXXXXXXXXXXXXVVRSCPLELPRLLALGDGSGSHDNDNTPDIRLYS-DNAFAEVESGRMRPGPNEYLYGQYYLPQITKVVEANRVQNRRDGSSSHIQRSTALYLLPSLINHSCLPNAAQVFVGNTLVITAARPIMAGEEVTIQYFDVLTTLQERQRMSGD-AFTCACERCRFEARL 939
R +TP + +G + I C GRGL AT+++ G +++V++ +A + + S ++ +E VT++ VR C RL+++ D+ PDI L+ D AF + + + L + + +VE + V + G + L+ L SLINHSC+PNA ++ VG+ ++ A+R I AGEEVT YFDVL+ L++R+ M+ F+C C RC+FE+ L
Sbjct: 167 RGKTPELAEFIGSIEIKKCEVSGRGLFATKNIVAGTLIIVTKAVATERGILGSGESGEKAQLIMWKSFIEEVTES------------------VRKCD-RTHRLVSILSTGKDEDDLEIPDISLFRPDEAFGIYDDSKRDLDVEKLLS----ILDVNSLVE-DAVSAKVLGKNKEYY-GVGLWTLASLINHSCIPNARRLHVGDYAIVHASRDIKAGEEVTFAYFDVLSPLEKRKEMAESWGFSCGCSRCKFESFL 397
BLAST of jgi.p|Trimin1|347596 vs. uniprot
Match: UPI0019001FDF (methyltransferase FGSG_00040 n=1 Tax=Benincasa hispida TaxID=102211 RepID=UPI0019001FDF) HSP 1 Score: 102 bits (253), Expect = 5.490e-19 Identity = 74/266 (27.82%), Postives = 134/266 (50.38%), Query Frame = 1
Query: 190 RLQTPACDKMVGPLRIGACGAKGRGLLATRDVKLGEVLMVSEPLAVTDA---DPSQFTTIGLLTGRLVEAVTDAXXXXXXXXXXXXXXXXXVVRSCPLE-LPRLLALGDGSGSHDNDNTPDIRLYSDNAFAEVESGRMRPGPNEYLYGQYYLPQITKVVEANRVQNRRDGSSSHIQRSTA------LYLLPSLINHSCLPNAAQVFVGNTLVITAARPIMAGEEVTIQYFDVLTTLQERQRMSGD-AFTCACERCRFEARLGSLAE 954
R+++P + +GP++I G GRGL AT++V G +L+V++ +A+ + S ++ V+ VTD+ V +S + L LL+ G+ ++ P++ ++ ++ PNE + I V++ N + D +S+ + + L++LPS INHSC+PNA ++ +G+ +++ A+R I GEE+T YFD L++ ++R+RMS F C C+RCRFE + + E
Sbjct: 172 RVKSPDLAEFIGPVQIRRSGISGRGLFATKNVDSGTLLLVTKAIAIERGILPENSDENAQLVMWKNFVDKVTDS-----------------VTKSTKTKNLISLLSCGE---VEEDLEVPEMSVFKPETEDQIS-------PNE-------MSNILSVLDINSLVE--DAASAIVLGKNSDYYGVGLWVLPSFINHSCIPNARRLHIGDHIIVHASRDIKTGEEITFAYFDPLSSSKDRKRMSETWGFNCKCKRCRFEEEISNKEE 401
BLAST of jgi.p|Trimin1|347596 vs. uniprot
Match: A0A2R6WYP6_MARPO (SET domain-containing protein n=3 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A2R6WYP6_MARPO) HSP 1 Score: 102 bits (254), Expect = 7.810e-19 Identity = 82/263 (31.18%), Postives = 129/263 (49.05%), Query Frame = 1
Query: 202 PACDKMVGPLRIG------ACGAKGRGLLATRDVKLGEVLMVSEPLAVTDADPSQFTTIGLLTGRLVEAVTDAXXXXXXXXXXXXXXXXXVVRSCPLELPRLLALGDGSGSHDNDNTPDIRLYSDNA-FAEVESGRMRPGPNEYLYGQYYLPQITKVVEANRVQNRR----DGSSSHIQRS--TALYLLPSLINHSCLPNAAQVFVGNTLVITAARPIMAGEEVTIQYFDVLTTLQERQR--MSGDAFTCACERCRFEARLGS 945
P C GP+++ G+ RGL+ T V+ G++L+VS PLA+ ++ +F I T R+ +A + R P L +L +L +GS N + P + L+ + F +S + Q + I VV+ N + GS RS + +++LPS INHSCLPNA++V VG+ ++I A+R + AGEEV + YFD+L+ L +R+ ++G FTC C RC+ E L S
Sbjct: 322 PKCADYSGPVKVQMLESKYGAGSGQRGLVTTTSVRAGDLLLVSNPLAIARSEGVEFHLIPE-TRRMNDASQE----------DLVTQLYNFARVAPRALHQLQSLYNGSK---NCSQPSMDLFVPGSIFNSPKSFKNSTNILGTAPAQPDITSIRNVVQWNAFDEQGFTTGGGSGRKGLRSFCSGIWVLPSFINHSCLPNASRVHVGDAMMIYASRDLEAGEEVCLPYFDILSPLPQRREKGLAGWGFTCKCPRCKLEETLQS 570
BLAST of jgi.p|Trimin1|347596 vs. uniprot
Match: A0A7S0X280_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Mantoniella antarctica TaxID=81844 RepID=A0A7S0X280_9CHLO) HSP 1 Score: 99.8 bits (247), Expect = 3.810e-18 Identity = 75/251 (29.88%), Postives = 116/251 (46.22%), Query Frame = 1
Query: 208 CDKMVGPLRIGACGAKGRGLLATRDVKLGEVLMVSEPLAVTDADPSQFTTIGLLTG---RLVEAVTDAXXXXXXXXXXXXXXXXXVVRSCPLELPRLLALGDGSGSHDNDNTPDIRLY------SDNAFAEVESGRMRPGPNEYLYGQYYLPQITKVVEANRVQNRRDGSSSHIQRSTALYLLPSLINHSCLPNAAQVFVGNTLVITAARPIMAGEEVTIQYFDVLTTLQERQRMSGD-AFTCACERCRFE 930
C VGP+++ A A RG++ TR V G++LMVS PL V L+TG LV+ + A P +L +LAL G+G+ PD+ + + AF E+ P + ++ ++ VV+ + ++N S +Y LPS INHSC PNA ++ +G+T+ I AA+ ++ GEEV I+YFDV +R ++ F+C C RC E
Sbjct: 192 CADHVGPVKVSAGTAHSRGVVTTRAVTAGQLLMVSSPLVVAP----------LVTGVEKALVQGLVGAASRN------------------PQDLSLILALPAGNGAASTLPVPDMATFRRHLSKGEEAFPEL--------PQQAIFTRH----AANVVKTSAMRNAA---------SVGVYALPSFINHSCAPNACKLLIGHTMFIHAAKDMVKGEEVLIKYFDVTMPRHDRAAVAKRWGFSCECRRCALE 393
BLAST of jgi.p|Trimin1|347596 vs. uniprot
Match: UPI001F5D4C7C (methyltransferase FGSG_00040 n=1 Tax=Lolium rigidum TaxID=89674 RepID=UPI001F5D4C7C) HSP 1 Score: 99.4 bits (246), Expect = 3.970e-18 Identity = 77/255 (30.20%), Postives = 113/255 (44.31%), Query Frame = 1
Query: 202 PACDKMVGPLRIGACGAKGRGLLATRDVKLGEVLMVSEPLAV------TDADPSQFTTIGLLTGRLVEAVTDAXXXXXXXXXXXXXXXXXVVRSCPLELPRLLALGDGSGSHDNDNTPDIRLYSDNAFAEVESGRMRPGPNEYLYGQYYLPQITKVVEANRVQNRRD-----GSSSHIQRSTALYLLPSLINHSCLPNAAQVFVGNTLVITAARPIMAGEEVTIQYFDVLTTLQERQRMSGD-AFTCACERCRFE 930
P + VGP+ + GRG+ A + V G LM+S+ +A+ AD + + V+ V DA CP + L G + + PD+ L+ E+ G G E L + +I KV++ N + G+S I L++LPSLINHSC PNA + VG+ V+ A+R I AGEEVT YF+VL + +R+ + F C C+RCRFE
Sbjct: 156 PDLAEHVGPVEVRRSAHGGRGVFAVKGVDAGGTLMISKAVAIERGVILNAADGGEKMVVWK---DFVDKVLDA------------------AEKCPRTASLIYTLSTGEEQQEELDVPDMALFKQEP-EELGDGVPETGGQEALD----VDRIMKVLDVNSLTEDAPSANLLGNSGIINCGVGLWILPSLINHSCHPNARRTHVGDHTVVHASRDIKAGEEVTFPYFEVLMPVGKRREAARAWGFECRCDRCRFE 384
BLAST of jgi.p|Trimin1|347596 vs. uniprot
Match: A0A0A0KQP3_CUCSA (SET domain protein n=3 Tax=Cucumis TaxID=3655 RepID=A0A0A0KQP3_CUCSA) HSP 1 Score: 98.2 bits (243), Expect = 9.590e-18 Identity = 68/260 (26.15%), Postives = 123/260 (47.31%), Query Frame = 1
Query: 190 RLQTPACDKMVGPLRIGACGAKGRGLLATRDVKLGEVLMVSEPLAVTDA---DPSQFTTIGLLTGRLVEAVTDAXXXXXXXXXXXXXXXXXVVRSCPLELPRLLALGDGSGSHDNDNTPDIRLYSDNAFAEVESGRMRPGPNEYLYGQYYLPQITKVVEANRVQNR-RDGSSSHIQRSTALYLLPSLINHSCLPNAAQVFVGNTLVITAARPIMAGEEVTIQYFDVLTTLQERQRMSGD-AFTCACERCRFEARLGSLAE 954
R ++P + +GP++I G GRGL AT++V G +L+V++ +A+ + ++ ++ VTD+ L LL+ G+G D+ + + F ++ P + + + + + +V + RD L++LPS INHSC+PNA ++ +G+ +++ A+R + AGEE+T YFD L++ ++R+RMS F C C+RCRFE + + E
Sbjct: 173 RGKSPGLAEFIGPIQIKRSGNSGRGLFATKNVDSGTLLLVTKAIAIERGILPENCDENAQLVMWKNFIDKVTDSATKSTKTKY----------------LIGLLSSGEGE--------EDLEVPEMSVFKPETKDQISPSEMSNILSVLDINSLVEDANSAKVLGKNRD------YYGVGLWVLPSFINHSCIPNARRLHIGDHILVHASRDVKAGEEITFAYFDPLSSWKDRKRMSETWGFNCNCKRCRFEEEISNKEE 402
BLAST of jgi.p|Trimin1|347596 vs. uniprot
Match: A0A317SK02_9PEZI (SET domain-containing protein n=1 Tax=Tuber magnatum TaxID=42249 RepID=A0A317SK02_9PEZI) HSP 1 Score: 98.6 bits (244), Expect = 1.300e-17 Identity = 76/255 (29.80%), Postives = 116/255 (45.49%), Query Frame = 1
Query: 208 CDKMVGPLRIGACGAKGRGLLATRDVKLGEVLMVSEPLAVTDADPS--QFTTIGLLTGRLVEAVTDAXXXXXXXXXXXXXXXXXVVRSCPLELPRLLALGDGSGSHDNDNTPD----------IRLYSDNAFAEVESGRMRPGPNEYLYGQYYLPQITKVVEANRVQNRRDGSSSHIQRSTALYLLPSLINHSCLPNAAQVFVGNTLVITAARPIMAGEEVTIQYFDVLTTLQERQR--MSGDAFTCACERCRFE 930
C + VGP+R+G G KGRGL ATRDVK GE+L+ S+ V + S + T + + R +A T + V+ P + + LG G D +R+ N F + P E L+ + ++ K++ +GS L+++PS INHSC N+A+ F+G+ L++ AAR I GEE+TI Y + ++Q+RQ+ SG F C C C E
Sbjct: 356 CAEYVGPVRVGDAGHKGRGLFATRDVKFGELLLCSKAFNVCHKETSGARLTILFNIKARKGQAGTHSQLVQELIQ---------VLYHNPKKAKKFYELGSGDYKRVRGEKVDGLPVVDSHLAMRIMLRNCF-DCTRLSSTDDPIENLFKE--KTEMEKMIAEASPTGTAEGSG--------LWIMPSYINHSCWQNSARSFLGDLLIVRAARDIPEGEEITINYLESECSVQKRQKACFSGWGFNCRCTLCEIE 590
BLAST of jgi.p|Trimin1|347596 vs. uniprot
Match: A0A2G5F4I4_AQUCA (SET domain-containing protein n=3 Tax=Thalictroideae TaxID=1463137 RepID=A0A2G5F4I4_AQUCA) HSP 1 Score: 96.3 bits (238), Expect = 3.440e-17 Identity = 72/265 (27.17%), Postives = 123/265 (46.42%), Query Frame = 1
Query: 190 RLQTPACDKMVGPLRIGACGAKGRGLLATRDVKLGEVLMVSEPLAV-------TDADPSQFTTIGLLTGRLVEAVTDAXXXXXXXXXXXXXXXXXVVRSCPLELPRLLALGDGSGSHDNDNTPDIRLYSDNAFAEVESGRMRPGPNEYLYGQYYLPQITKVVEANRVQNRRDGSSSHIQRSTA------LYLLPSLINHSCLPNAAQVFVGNTLVITAARPIMAGEEVTIQYFDVLTTLQERQRMSGD-AFTCACERCRFEARLG 942
R + P + +G ++I GRGL AT++++ G +L+V++ +A D D SQ + ++ V+ V DA C + RL++ ++ PDI L+ A + Y+ + +I +++ N + D S+ + + L++L S INHSCLPNA ++ +G+ +++ +R + AGEE+T YFDVLT L++R+ M F C C+RCRFE G
Sbjct: 141 RGKLPEMAEYIGSIQINKSEYSGRGLFATKNMEAGTLLLVTKAIATGRGIMPELDEDSSQSARL-VMWKDFVDKVVDA------------------TNKCS-KTQRLISTLSSGEDEESMEVPDINLFRPEAEEDF-----------YMKANPEMCKIMNILDVNSLTE--DAISAKVLGKNSDYYGVGLWILASFINHSCLPNARRLHIGDHVLVYTSRDVRAGEEITFAYFDVLTPLKKRREMCKTWGFHCNCKRCRFEEVFG 372
BLAST of jgi.p|Trimin1|347596 vs. uniprot
Match: A0A2R6X6D9_MARPO (SET domain-containing protein n=2 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A2R6X6D9_MARPO) HSP 1 Score: 97.4 bits (241), Expect = 4.450e-17 Identity = 76/260 (29.23%), Postives = 117/260 (45.00%), Query Frame = 1
Query: 196 QTPACDKMVGPLRI-GACGAKGRGLLATRDVKLGEVLMVSEPLAVTDADPSQFTTIGLLT----GRLVEAVTDAXXXXXXXXXXXXXXXXXVVRSCPLELPRLLALGDGSGSHDNDNTPDIRLY-SDNAFAEVESGRMRPGPNEYLYGQYYLPQ--ITKVVEANRVQNRRDGSSSHIQRSTALYLLPSLINHSCLPNAAQVFVGNTLVITAARPIMAGEEVTIQYFDVLTTLQERQRMSGDA--FTCACERCRFEARLGS 945
+ P C VGP+++ A G KGRGL T+ V+ G++L+VS PLA+ D+ + L GRL + + + RLLAL G S + P + L+ A VE+ + L + + + ++ +E R D + L++LPS INHSC+PN + V +G L + A+R + AGEE+ YF+V L +R+ ++ FTC C RC E R S
Sbjct: 1051 EIPTCADYVGPIQVKAASGDKGRGLFLTKHVEAGDLLLVSNPLAMLDSMSANKCRKNSLDSGAKGRLDPEIQEKLVLAVRER----------AKVSTKNRQRLLALCHGPDSAQH-AVPSMDLFIPGRRVAPVETLNLEEERINRLVMRNAIDRNMVSTALERRHDPPRTDAEDHEERVFWGLWVLPSFINHSCIPNVSMVVIGRALFVYASRDLSAGEELLCSYFNVFQPLPQRREIASRCWDFTCKCARCLLETRFES 1299 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|347596 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_5880 ID=mRNA_5880|Name=jgi.p|Trimin1|347596|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2077bp|location=Sequence derived from alignment at Contig_13:1494483..1503346- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGCGACTCGGCCGCTGGGAAGAGGCCATGGTGGAGGCAATCGGCCCGAAback to top protein sequence of jgi.p|Trimin1|347596 >Trimin1|347596|estExt_Genemark1.C_Ctg_130149 ID=Trimin1|347596|estExt_Genemark1.C_Ctg_130149|Name=jgi.p|Trimin1|347596|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=456bp MRLGRWEEAMVEAIGPKFGQRGGAKWKFAVGTYMLEMKTYEECQAVIEKIback to top mRNA from alignment at Contig_13:1494483..1503346- Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_5880 ID=mRNA_5880|Name=jgi.p|Trimin1|347596|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=8864bp|location=Sequence derived from alignment at Contig_13:1494483..1503346- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_13:1494483..1503346- >mRNA_5880 ID=mRNA_5880|Name=jgi.p|Trimin1|347596|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1368bp|location=Sequence derived from alignment at Contig_13:1494483..1503346- (Tribonema minus UTEX_B_3156 )back to top |