mRNA_5874 (mRNA) Tribonema minus UTEX_B_3156
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Overview
Homology
BLAST of jgi.p|Trimin1|160442 vs. uniprot
Match: A0A835ZAY4_9STRA (Cryptochrome DASH (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAY4_9STRA) HSP 1 Score: 830 bits (2143), Expect = 2.010e-304 Identity = 397/397 (100.00%), Postives = 397/397 (100.00%), Query Frame = 1
Query: 1 VFTHFRKAVESRGAICPALAAPSRLRPLPPSADGFDNGAIPSFADLKVEPPVPDARAVLPFQGGESAGLERVKSWIWDQDCLRSYKETRNGMVGGDYSSKFSSWLAFGCLSPRLVYQEIKRYETERVANESTYWLVFELLWRDYFRFAAATHGNKIFFLGGPQVPDSVVNLCAQHPLLLNCSYAQGQTGYPFIDANMRELRATGFMSNRGRQNVASFLVRDMGQDWRLGAEWFEEQLLDYDPCSNWGNWTYAAGVGADPREDRYFNIVKQGKTYDPTAEHARLWCPEVSHLAPALLLDTPARGLTASDSSGVCYPPPIVPLKFSAYKGSSSNARPVGRAGDHREFRQGTTGAHPPNASAHGRGEGRTARGGVRDKIKQERRGARRNRVQNDYMGGDA 1191
VFTHFRKAVESRGAICPALAAPSRLRPLPPSADGFDNGAIPSFADLKVEPPVPDARAVLPFQGGESAGLERVKSWIWDQDCLRSYKETRNGMVGGDYSSKFSSWLAFGCLSPRLVYQEIKRYETERVANESTYWLVFELLWRDYFRFAAATHGNKIFFLGGPQVPDSVVNLCAQHPLLLNCSYAQGQTGYPFIDANMRELRATGFMSNRGRQNVASFLVRDMGQDWRLGAEWFEEQLLDYDPCSNWGNWTYAAGVGADPREDRYFNIVKQGKTYDPTAEHARLWCPEVSHLAPALLLDTPARGLTASDSSGVCYPPPIVPLKFSAYKGSSSNARPVGRAGDHREFRQGTTGAHPPNASAHGRGEGRTARGGVRDKIKQERRGARRNRVQNDYMGGDA
Sbjct: 1 VFTHFRKAVESRGAICPALAAPSRLRPLPPSADGFDNGAIPSFADLKVEPPVPDARAVLPFQGGESAGLERVKSWIWDQDCLRSYKETRNGMVGGDYSSKFSSWLAFGCLSPRLVYQEIKRYETERVANESTYWLVFELLWRDYFRFAAATHGNKIFFLGGPQVPDSVVNLCAQHPLLLNCSYAQGQTGYPFIDANMRELRATGFMSNRGRQNVASFLVRDMGQDWRLGAEWFEEQLLDYDPCSNWGNWTYAAGVGADPREDRYFNIVKQGKTYDPTAEHARLWCPEVSHLAPALLLDTPARGLTASDSSGVCYPPPIVPLKFSAYKGSSSNARPVGRAGDHREFRQGTTGAHPPNASAHGRGEGRTARGGVRDKIKQERRGARRNRVQNDYMGGDA 397
BLAST of jgi.p|Trimin1|160442 vs. uniprot
Match: UPI0019E3F893 (DASH family cryptochrome n=1 Tax=Synechococcales cyanobacterium C42_A2020_086 TaxID=2774344 RepID=UPI0019E3F893) HSP 1 Score: 378 bits (971), Expect = 6.780e-125 Identity = 190/331 (57.40%), Postives = 231/331 (69.79%), Query Frame = 1
Query: 1 VFTHFRKAVESRGAICPALAAPSRLRPLPPSADGFDNGAIPSFADLKVEPPVPDARAVLPFQGGESAGLERVKSWIWDQDCLRSYKETRNGMVGGDYSSKFSSWLAFGCLSPRLVYQEIKRYETERVANESTYWLVFELLWRDYFRFAAATHGNKIFFLGGPQVPDSVVNLCAQHPLLLNCSYAQGQTGYPFIDANMRELRATGFMSNRGRQNVASFLVRDMGQDWRLGAEWFEEQLLDYDPCSNWGNWTYAAGVGADPREDRYFNIVKQGKTYDPTAEHARLWCPEVSHLAPALLLDTPARGLTASDSS------GVCYPPPIVPLKFSA 975
+FT FRK VE + ++ P L P RL+ LP +G D G IPS +DL +EP PD RAVLPFQGGESAGL R+K +IW+QD LR YKETRNGM+G +YSSKFS WLA GCLSPR +Y+++ +YE ERV N+STYWL+FELLWRDYFRF HGNK+F G Q D Q L + +GQTGYP +DANMREL ATGF+SNRGRQNVASFL +++G DWR+GAEWFE L+DYD CSNWGNW Y AGVG D R R+FNI KQ K YDP ++ + W PE++++ P + P R LTA + GV YP P+V L SA
Sbjct: 153 LFTAFRKQVEKQASVNPTLPGPRRLQALP---EGIDVGEIPSVSDLGLEPVPPDPRAVLPFQGGESAGLARLKHYIWEQDHLRRYKETRNGMLGANYSSKFSPWLALGCLSPRYIYEQVLQYEEERVRNDSTYWLIFELLWRDYFRFICQKHGNKVFHPSGLQGIDIPWKQDWQRFDL----WREGQTGYPLVDANMRELAATGFISNRGRQNVASFLTKNLGIDWRMGAEWFESLLIDYDVCSNWGNWNYTAGVGNDARGFRFFNITKQAKDYDPQGKYVKHWLPELANV-PISKIHEPWR-LTAEEQKRHQVRLGVDYPHPVVDLFISA 474
BLAST of jgi.p|Trimin1|160442 vs. uniprot
Match: UPI0003490387 (DASH family cryptochrome n=1 Tax=Oscillatoria sp. PCC 10802 TaxID=1173028 RepID=UPI0003490387) HSP 1 Score: 368 bits (944), Expect = 8.560e-121 Identity = 180/330 (54.55%), Postives = 225/330 (68.18%), Query Frame = 1
Query: 1 VFTHFRKAVESRGAICPALAAPSRLRPLPPSADGFDNGAIPSFADLKVEPPVPDARAVLPFQGGESAGLERVKSWIWDQDCLRSYKETRNGMVGGDYSSKFSSWLAFGCLSPRLVYQEIKRYETERVANESTYWLVFELLWRDYFRFAAATHGNKIFFLGGPQVPDSVVNLCAQHPLLLNCSYAQGQTGYPFIDANMRELRATGFMSNRGRQNVASFLVRDMGQDWRLGAEWFEEQLLDYDPCSNWGNWTYAAGVGADPREDRYFNIVKQGKTYDPTAEHARLWCPEVSHLAPALLLDTPARGLTASDSS-----GVCYPPPIVPLKFSA 975
VFT+FRK VE + P P RL PLP D G +P AD ++PP PD RA L F+GGE+AGLERV+ + W QD LR YK+TRNGM+G DYSSKFS WLA GCLSPR +++++++YE +RV N+STYWLVFELLWRDYFRF A HGN+IF L G Q V + Q + +G+TG+P +DANMREL ATGFMSNRGRQNVASFL +++G +W++GAEWFE L+DYD CSNWGNW Y AGVG D R R+FNI+KQ K YDP E+ + W PE++ + PA ++ P + L GV YP P+V L SA
Sbjct: 154 VFTNFRKRVEQSSEVDPTFPTPKRLPPLPE----IDTGTLPQLADFGLQPPAPDKRAALQFKGGETAGLERVEQYFWKQDRLRVYKDTRNGMLGADYSSKFSPWLALGCLSPRYIFEQVQKYEEQRVKNDSTYWLVFELLWRDYFRFICAKHGNRIFHLSGLQG----VPIPWQEDWQRFALWKEGKTGFPLLDANMRELAATGFMSNRGRQNVASFLTKNLGINWQMGAEWFESLLIDYDVCSNWGNWNYTAGVGNDARGFRFFNILKQSKDYDPQGEYVKHWLPELAKV-PAGKVNEPWKLLPVEQQRFQVRIGVDYPNPVVDLFKSA 474
BLAST of jgi.p|Trimin1|160442 vs. uniprot
Match: UPI000B45A2AB (cryptochrome DASH-like n=1 Tax=Mizuhopecten yessoensis TaxID=6573 RepID=UPI000B45A2AB) HSP 1 Score: 366 bits (940), Expect = 2.850e-120 Identity = 176/326 (53.99%), Postives = 228/326 (69.94%), Query Frame = 1
Query: 1 VFTHFRKAVESRGAICPALAAPSRLRPLPPSADGFDNGAIPSFADLKVEPPVPDARAVLPFQGGESAGLERVKSWIWDQDCLRSYKETRNGMVGGDYSSKFSSWLAFGCLSPRLVYQEIKRYETERVANESTYWLVFELLWRDYFRFAAATHGNKIFFLGGPQ---VPDSVVNLCAQHPLLLNCSYAQGQTGYPFIDANMRELRATGFMSNRGRQNVASFLVRDMGQDWRLGAEWFEEQLLDYDPCSNWGNWTYAAGVGADPREDRYFNIVKQGKTYDPTAEHARLWCPEVSHLAPALLLDT----PARGLTASDSSGVCYPPPIV 957
V+T FRK VE + + + P L+PLPP G + G +PS DL ++ P D+R+V+ F+GGE+ L+R+ ++W D + +YKETRNG+VG DYS+KFS WLA GC+SPR +Y EIKRYE+ERVAN+STYW++FELLWRDYFRF A +GNK+FF GG Q +P Q +LL S+ +G+TG PF+DANMRE+ ATGFMSNRGRQNVASFL +D+ DWR+GAEWFE L+D+D CSN+GNW Y+AG+G DPREDR FN+VKQG YDP ++ RLW PE+ + + PA +A S G YP PIV
Sbjct: 125 VYTQFRKRVEDQARVRKSFTMPDTLQPLPP---GIEEGQVPSLQDLGLKAPAEDSRSVMSFRGGETVALDRLNHYLWQSDSVSTYKETRNGLVGSDYSTKFSVWLAHGCISPRHIYWEIKRYESERVANQSTYWVIFELLWRDYFRFVALKYGNKLFFQGGIQGKTIP------WKQDQMLLK-SWTEGKTGVPFVDANMREMAATGFMSNRGRQNVASFLTKDLKLDWRMGAEWFESLLIDHDVCSNYGNWLYSAGIGNDPREDRKFNMVKQGLDYDPEGDYVRLWVPELEKVKGGAVHTVWTLNPATLSSAEVSLGETYPNPIV 440
BLAST of jgi.p|Trimin1|160442 vs. uniprot
Match: A0A3M1WVM4_9BACT (Cryptochrome DASH n=1 Tax=Bacteroidetes bacterium TaxID=1898104 RepID=A0A3M1WVM4_9BACT) HSP 1 Score: 365 bits (938), Expect = 4.580e-120 Identity = 185/325 (56.92%), Postives = 223/325 (68.62%), Query Frame = 1
Query: 1 VFTHFRKAVESRGAICPALAAPSRLRPLPPSADGFDNGAIPSFADLKVEPPVPDARAVLPFQGGESAGLERVKSWIWDQDCLRSYKETRNGMVGGDYSSKFSSWLAFGCLSPRLVYQEIKRYETERVANESTYWLVFELLWRDYFRFAAATHGNKIFFLGGPQVPDSVVNLCAQHPLLLNCSYAQGQTGYPFIDANMRELRATGFMSNRGRQNVASFLVRDMGQDWRLGAEWFEEQLLDYDPCSNWGNWTYAAGVGADPREDRYFNIVKQGKTYDPTAEHARLWCPEVSHLAPALLLDTPARGLTASDSSGVC----YPPPIVPL 963
+FT FRK VE + P P +L LPP+ G P L+ E PDARAVLPF GGE AGL R++ ++W+ D LR YKETRNG++G DYSSKFS+WLA GCLSPR +Y E+KRYE RV N STYWL+FEL+WRDYFRF A HGN++FF GG + DS Q L ++ QGQTG PF+DANMREL TGFMSNRGRQNVASFLVRD+G DWRLGAEWFE QL+DYD CSNWGNW Y AG+G DPRE+RYFN+V QGK YDP ++ R W PE++ L A + + A ++GV YP P+V +
Sbjct: 154 IFTQFRKQVEKMAGVRPVFETPGQLS-LPPAVPA---GLTPEAWGLEGE--APDARAVLPFAGGEEAGLARLQDYLWEGDHLRRYKETRNGLLGADYSSKFSAWLALGCLSPRQIYAEVKRYEQLRVKNASTYWLIFELIWRDYFRFVAKKHGNRLFFPGGLK-GDSARG--RQDDRLFR-AWQQGQTGIPFVDANMRELWETGFMSNRGRQNVASFLVRDLGLDWRLGAEWFESQLVDYDVCSNWGNWNYVAGIGNDPRENRYFNVVSQGKRYDPKGDYLRHWLPELAALPAAGIHEPYAEQRRQLAAAGVHLGGNYPHPVVSM 468
BLAST of jgi.p|Trimin1|160442 vs. uniprot
Match: A0A166SSR0_9CYAN (Cryptochrome DASH n=1 Tax=Phormidium willei BDU 130791 TaxID=399101 RepID=A0A166SSR0_9CYAN) HSP 1 Score: 365 bits (938), Expect = 6.460e-120 Identity = 187/330 (56.67%), Postives = 228/330 (69.09%), Query Frame = 1
Query: 1 VFTHFRKAVESRGAICPALAAPSRLRPLPPSADGFDNGAIPSFADLKVEPPVPDARAVLPFQGGESAGLERVKSWIWDQDCLRSYKETRNGMVGGDYSSKFSSWLAFGCLSPRLVYQEIKRYETERVANESTYWLVFELLWRDYFRFAAATHGNKIFFLGGPQVPDSVVNLCAQHPLLLNCSYAQGQTGYPFIDANMRELRATGFMSNRGRQNVASFLVRDMGQDWRLGAEWFEEQLLDYDPCSNWGNWTYAAGVGADPREDRYFNIVKQGKTYDPTAEHARLWCPEVSHLAPALLLDTPARGLTASD------SSGVCYPPPIVPLKFS 972
VFT FRKAVE+ I P A R PLP D G +PS A L V+ P D+R+VL FQGGESAG++R++ +IW DCLR+YK TRNGM+G DYSSKFS WLA GCLSPR + E++RYE ERVAN+STYWLVFELLWRDYFRF AA +G+++F+ G Q +++ PL S+ G TGYP +DANMREL ATGFMSNRGRQNVASFL +++G DWR+GAEWFE L+DYD CSNWGNWTY AGVG D R RYFNI KQ + YDP E+ + W PE++ + P + R L A + + GV YPPP+V L S
Sbjct: 152 VFTQFRKAVENSTPISPPAPALERFPPLPE----IDVGELPSLASLGVDSPQTDSRSVLAFQGGESAGMQRLQDYIWRGDCLRNYKLTRNGMLGADYSSKFSPWLALGCLSPRSIVAEVRRYEQERVANQSTYWLVFELLWRDYFRFMAAKYGDRLFYRSGLQ--GRLIDWQQDWPLF--DSWRSGMTGYPLVDANMRELAATGFMSNRGRQNVASFLTKNLGIDWRMGAEWFESLLIDYDVCSNWGNWTYTAGVGNDARGFRYFNIPKQSQDYDPKGEYVKHWLPELAAV-PGDRIHQIYR-LKAGELGKYGVNLGVDYPPPVVDLADS 471
BLAST of jgi.p|Trimin1|160442 vs. uniprot
Match: A0A8K1MT28_9CYAN (DASH family cryptochrome n=2 Tax=Oscillatoriales TaxID=1150 RepID=A0A8K1MT28_9CYAN) HSP 1 Score: 365 bits (937), Expect = 7.820e-120 Identity = 183/331 (55.29%), Postives = 228/331 (68.88%), Query Frame = 1
Query: 1 VFTHFRKAVESRGAICPALAAPSRLRPLPPSADGFDNGAIPSFADLKVEPPVPDARAVLPFQGGESAGLERVKSWIWDQDCLRSYKETRNGMVGGDYSSKFSSWLAFGCLSPRLVYQEIKRYETERVANESTYWLVFELLWRDYFRFAAATHGNKIFFLGGPQVPDSVVNLC-AQHPLLLNCSYAQGQTGYPFIDANMRELRATGFMSNRGRQNVASFLVRDMGQDWRLGAEWFEEQLLDYDPCSNWGNWTYAAGVGADPREDRYFNIVKQGKTYDPTAEHARLWCPEVSHLAPALLLDTPARGLTASD------SSGVCYPPPIVPLKFS 972
VFTHFRKAVE+ + P + + PLP A G +P+ +L VEPP+ D R VL F+GGESAGL+R++ + W++DCL+ YK TRNGM+G DYSSKFS WLA GCLSPR + E++RYE ERVAN+STYWLVFELLWRDYFRF AA G+++F+ G Q +N+ Q NC + +G+TGYP +DANMREL ATGFMSNRGRQNVASFL +++G DWR+GAEWFE L+DYD CSNWGNW Y AGVG D R RYFNI KQ K YDP E+ + W PE++ + P + D L A + + GV YP P+V L S
Sbjct: 150 VFTHFRKAVETSAEVMPPIPPLREISPLPDVAVG----ELPTLQELGVEPPLMDERGVLRFRGGESAGLQRLQDYFWNRDCLQRYKLTRNGMLGADYSSKFSPWLALGCLSPRQIVAEVRRYEAERVANDSTYWLVFELLWRDYFRFVAAKGGDRLFYPSGLQG----LNIAWKQDWPQFNC-WREGRTGYPLVDANMRELAATGFMSNRGRQNVASFLTKNLGIDWRMGAEWFESLLIDYDVCSNWGNWNYTAGVGNDARGFRYFNIPKQSKDYDPQGEYVKHWLPELAGVPPHRIHDL--YRLKAGELRQYGVNPGVSYPQPVVDLNES 469
BLAST of jgi.p|Trimin1|160442 vs. uniprot
Match: A0A3M1T4V4_9CYAN (Cryptochrome DASH n=2 Tax=Cyanobacteria TaxID=1117 RepID=A0A3M1T4V4_9CYAN) HSP 1 Score: 364 bits (935), Expect = 1.890e-119 Identity = 182/329 (55.32%), Postives = 222/329 (67.48%), Query Frame = 1
Query: 1 VFTHFRKAVESRGAICPALAAPSRLRPLPPSADGFDNGAIPSFADLKVEPPVPDARAVLPFQGGESAGLERVKSWIWDQDCLRSYKETRNGMVGGDYSSKFSSWLAFGCLSPRLVYQEIKRYETERVANESTYWLVFELLWRDYFRFAAATHGNKIFFLGGPQVPDSVVNLCAQHPLLLNCSYAQGQTGYPFIDANMRELRATGFMSNRGRQNVASFLVRDMGQDWRLGAEWFEEQLLDYDPCSNWGNWTYAAGVGADPREDRYFNIVKQGKTYDPTAEHARLWCPEVSHLAPALLLDTPARGLTASDSS-----GVCYPPPIVPLKFS 972
+FT FRK VES ++ P P +L PLP D G IP+ ADL + PV D RAVL F GGE+A L+R+ +IW +DCL+ YK+TRNGM+G DYSSKFS WL FGCLSPRL+YQ+I+ YE ERV N+STYWL FELLWRDYFRF A HGN+IF G Q + + L + GQTG P IDANMREL ATGFMSNRGRQNVASFL +++G +W++GAEWFE QL+DYD CSNWGNW Y AG+G D R RYFNI+KQG+ YDP + + WCPE+ ++ PA + P A+ GV YP P+V L S
Sbjct: 154 IFTQFRKQVESHCSVRPPFPTPEQLPPLPE----IDGGEIPTLADLNLSKPVFDDRAVLRFVGGETAALDRLNEYIWQRDCLKDYKQTRNGMLGADYSSKFSPWLGFGCLSPRLIYQQIQEYERERVKNDSTYWLFFELLWRDYFRFIGAKHGNRIFQKSGLQGLEIPWKEDWEQFQL----WQTGQTGIPLIDANMRELAATGFMSNRGRQNVASFLTKNLGINWQMGAEWFESQLIDYDVCSNWGNWNYVAGIGNDARGFRYFNILKQGRDYDPEGNYIKHWCPELKNV-PASKIGEPWTLSPAAQEDFGVKLGVDYPYPMVDLMES 473
BLAST of jgi.p|Trimin1|160442 vs. uniprot
Match: UPI0019F404C5 (DASH family cryptochrome n=1 Tax=Oscillatoriaceae cyanobacterium M7585_C2015_266 TaxID=2774341 RepID=UPI0019F404C5) HSP 1 Score: 363 bits (933), Expect = 4.020e-119 Identity = 177/330 (53.64%), Postives = 226/330 (68.48%), Query Frame = 1
Query: 1 VFTHFRKAVESRGAICPALAAPSRLRPLPPSADGFDNGAIPSFADLKVEPPVPDARAVLPFQGGESAGLERVKSWIWDQDCLRSYKETRNGMVGGDYSSKFSSWLAFGCLSPRLVYQEIKRYETERVANESTYWLVFELLWRDYFRFAAATHGNKIFFLGGPQVPDSVVNLCAQHPLLLNCSYAQGQTGYPFIDANMRELRATGFMSNRGRQNVASFLVRDMGQDWRLGAEWFEEQLLDYDPCSNWGNWTYAAGVGADPREDRYFNIVKQGKTYDPTAEHARLWCPEVSHLAPALLLDTPARGLTASDSS-----GVCYPPPIVPLKFSA 975
+FT+FRK VE ++ P L P+ L PLP D GA+P D +EPPV D RAVL F+GGE+A L R++ + W QD LR YKETRNGM+G +YSSKFS WLA GCLSPR +Y+++K+YE++RV N+STYWL+FELLWRDYFRF A HGN+IF + G Q + + + L + +G+TG+P +DANMREL ATGFMSNRGRQNVASFL +++G +W++GAEWFE L+DYD CSNWGNW Y AGVG D R R+FNI+KQ K YDP E+ + W PE++ L PA + P + L GV YP +V L SA
Sbjct: 154 LFTNFRKQVEQTSSVKPTLPTPNSLPPLP----DIDAGALPQITDFGIEPPVQDNRAVLKFKGGETAALSRLQDYFWKQDLLRVYKETRNGMLGANYSSKFSPWLALGCLSPRYIYEQVKKYESQRVKNDSTYWLIFELLWRDYFRFICAKHGNRIFRISGLQG----IPIPWKEDWELFNIWKEGKTGFPLVDANMRELAATGFMSNRGRQNVASFLTKNLGINWQMGAEWFESLLIDYDVCSNWGNWNYTAGVGNDARGFRFFNIIKQSKDYDPHGEYVKYWLPELAKL-PASKVHEPWKLLPVEQERFGVKIGVDYPQAVVDLFKSA 474
BLAST of jgi.p|Trimin1|160442 vs. uniprot
Match: A0A2T1DBF8_9CYAN (Cryptochrome DASH n=1 Tax=filamentous cyanobacterium CCP2 TaxID=2107700 RepID=A0A2T1DBF8_9CYAN) HSP 1 Score: 363 bits (933), Expect = 4.280e-119 Identity = 181/345 (52.46%), Postives = 228/345 (66.09%), Query Frame = 1
Query: 1 VFTHFRKAVESRGAICPALAAPSRLRPLPPSADGFDNGAIPSFADLKVEPPVPDARAVLPFQGGESAGLERVKSWIWDQDCLRSYKETRNGMVGGDYSSKFSSWLAFGCLSPRLVYQEIKRYETERVANESTYWLVFELLWRDYFRFAAATHGNKIFFLGGPQ-VPDSVVNLCAQHPLLLNCSYAQGQTGYPFIDANMRELRATGFMSNRGRQNVASFLVRDMGQDWRLGAEWFEEQLLDYDPCSNWGNWTYAAGVGADPREDRYFNIVKQGKTYDPTAEHARLWCPEVSHLAPALLLDT----PARGLTASDSSGVCYPPPIVPLKFSAYKGSSSNARPVGRAG 1020
+FT FRK VE + P L +P LR LP +G + G +P+ +L +E P D RAVLPF+GGE+AGL+R+ + W D LR YKETRNGMVG DYSSKFS WLA GCLSPR +Y+++++YE +RV N+STYWL+FELLWRDYFRF A HGNK+F+ G Q P + L + GQTG+P +DANMREL ATGFMSNRGRQNVASFL +++G DWR+GAEWFE L+DYD CSNWGNW Y AGVG D R R+FNI+KQ K YD E+ + W PE++++ A + + P + GV YP P+V L SA +GRAG
Sbjct: 154 IFTQFRKQVEKTSTVNPVLPSPRMLRGLP---EGIETGHLPTLQELGLEAPQHDDRAVLPFKGGETAGLDRLDHYFWKGDRLRIYKETRNGMVGADYSSKFSPWLALGCLSPRYIYEQVQQYEDQRVRNDSTYWLIFELLWRDYFRFICAKHGNKVFYASGLQGTPIPWKTDWERFDL-----WRTGQTGFPLVDANMRELAATGFMSNRGRQNVASFLTKNLGIDWRMGAEWFESLLIDYDVCSNWGNWNYTAGVGNDARGFRFFNILKQSKDYDRNGEYVKHWLPELANIPAAKVHEPWKLQPVEQKRFNVRIGVDYPNPVVDLFKSAEANEKIYNGAIGRAG 490 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|160442 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_5874 ID=mRNA_5874|Name=jgi.p|Trimin1|160442|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1194bp|location=Sequence derived from alignment at Contig_13:1435292..1440640- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. GTGTTCACGCACTTCCGCAAGGCTGTTGAGAGCAGGGGAGCCATTTGTCCback to top protein sequence of jgi.p|Trimin1|160442 >Trimin1|160442|e_gw1.13.134.1 ID=Trimin1|160442|e_gw1.13.134.1|Name=jgi.p|Trimin1|160442|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=398bp VFTHFRKAVESRGAICPALAAPSRLRPLPPSADGFDNGAIPSFADLKVEPback to top mRNA from alignment at Contig_13:1435292..1440640- Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_5874 ID=mRNA_5874|Name=jgi.p|Trimin1|160442|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=5349bp|location=Sequence derived from alignment at Contig_13:1435292..1440640- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_13:1435292..1440640- >mRNA_5874 ID=mRNA_5874|Name=jgi.p|Trimin1|160442|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1194bp|location=Sequence derived from alignment at Contig_13:1435292..1440640- (Tribonema minus UTEX_B_3156 )back to top |