mRNA_5867 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	jgi.p\|Trimin1\|347591
Unique Name	mRNA_5867
Type	mRNA
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )

Homology

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BLAST of jgi.p|Trimin1|347591 vs. uniprot
Match: A0A835ZDP0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDP0_9STRA)

HSP 1 Score: 354 bits (909), Expect = 1.040e-122
Identity = 199/199 (100.00%), Postives = 199/199 (100.00%), Query Frame = 3

Query:   48 MPVDEGALTSRQEEALELYGSAHKARLALLGEKHPDTVAVRNNIAELLERMGRADESLAMRERILQSLGVSQKDLAEMENVDEKAFNEQKMKTDEKWDEIQAEMIAEQRKQRQKVIKPDPTKLFSTKPKQTSRNAPALDTRIAQTPLNASGSPVVDADEFVAISFSAEESSCXXXXXXXXXXWEAYADEICRKPPPPTG 644
            MPVDEGALTSRQEEALELYGSAHKARLALLGEKHPDTVAVRNNIAELLERMGRADESLAMRERILQSLGVSQKDLAEMENVDEKAFNEQKMKTDEKWDEIQAEMIAEQRKQRQKVIKPDPTKLFSTKPKQTSRNAPALDTRIAQTPLNASGSPVVDADEFVAISFSAEESSCXXXXXXXXXXWEAYADEICRKPPPPTG
Sbjct:    1 MPVDEGALTSRQEEALELYGSAHKARLALLGEKHPDTVAVRNNIAELLERMGRADESLAMRERILQSLGVSQKDLAEMENVDEKAFNEQKMKTDEKWDEIQAEMIAEQRKQRQKVIKPDPTKLFSTKPKQTSRNAPALDTRIAQTPLNASGSPVVDADEFVAISFSAEESSCXXXXXXXXXXWEAYADEICRKPPPPTG 199

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|347591 vs. uniprot

BLAST of jgi.p|Trimin1|347591 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A835ZDP0_9STRA	1.040e-122	100.00	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_13	contig	Contig_13:1387783..1392662 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Properties


Property Name	Value
ProteomeId	Trimin1\|347591\|estExt_Genemark1.C_Ctg_130137
Hectar predicted targeting category	other localisation
TranscriptId	347913
Track	FilteredModels1
ProteinId	347591

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|347591	gene_5867	Tribonema minus UTEX_B_3156	gene	Contig_13 1387783..1392662 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|347591	Trimin1\|347591\|estExt_Genemark1.C_Ctg_130137	Tribonema minus UTEX_B_3156	polypeptide	Contig_13 1387783..1392615 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
exon_5867_7	exon_5867_7	Tribonema minus UTEX_B_3156	exon	Contig_13 1387783..1387803 -
exon_5867_6	exon_5867_6	Tribonema minus UTEX_B_3156	exon	Contig_13 1387977..1388058 -
exon_5867_5	exon_5867_5	Tribonema minus UTEX_B_3156	exon	Contig_13 1389560..1389662 -
exon_5867_4	exon_5867_4	Tribonema minus UTEX_B_3156	exon	Contig_13 1389932..1390065 -
exon_5867_3	exon_5867_3	Tribonema minus UTEX_B_3156	exon	Contig_13 1390598..1390708 -
exon_5867_2	exon_5867_2	Tribonema minus UTEX_B_3156	exon	Contig_13 1391737..1391878 -
exon_5867_1	exon_5867_1	Tribonema minus UTEX_B_3156	exon	Contig_13 1392609..1392662 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
CDS_5867	CDS_5867	Tribonema minus UTEX_B_3156	CDS	Contig_13 1392609..1392615 -

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
UTR5_5867	UTR5_5867	Tribonema minus UTEX_B_3156	five_prime_UTR	Contig_13 1392616..1392662 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Contig_13:1387783..1392662-
coding sequence from alignment at Contig_13:1387783..1392662-

spliced messenger RNA

>mRNA_5867 ID=mRNA_5867|Name=jgi.p|Trimin1|347591|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=647bp|location=Sequence derived from alignment at Contig_13:1387783..1392662- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
TGACAGCGACCGCCACCAACAACCTTGCCTACCATCTGGCAACTTCCATG
CCAGTGGATGAGGGAGCCCTGACTTCAAGGCAGGAGGAAGCGCTGGAGCT
GTATGGCAGTGCTCACAAGGCGCGCTTGGCCCTGCTAGGCGAGAAGCACC
CTGATACCGTGGCAGTGCGCAACAACATTGCAGAACTGCTGGAAAGGATG
GGCCGCGCCGATGAGTCGCTGGCCATGCGTGAGAGAATCCTGCAGTCACT
TGGTGTGTCGCAGAAGGACCTGGCCGAGATGGAGAATGTGGACGAGAAGG
CATTCAATGAGCAGAAGATGAAAACCGACGAGAAGTGGGACGAGATACAG
GCGGAGATGATAGCAGAGCAACGCAAACAGCGCCAAAAGGTCATCAAGCC
AGATCCCACCAAGCTGTTCAGCACCAAGCCCAAACAGACAAGCAGAAATG
CACCGGCGCTCGACACGAGAATTGCGCAGACGCCTCTCAACGCCTCTGGG
TCTCCCGTGGTAGATGCAGACGAGTTTGTCGCGATCAGCTTCAGCGCGGA
AGAAAGCAGCTGCAGCGGCGGGCAGGAGGACGACGACGACGACTGGGAGG
CCTATGCTGACGAGATCTGCAGAAAGCCGCCGCCGCCAACAGGCTAG

protein sequence of jgi.p|Trimin1|347591

>Trimin1|347591|estExt_Genemark1.C_Ctg_130137 ID=Trimin1|347591|estExt_Genemark1.C_Ctg_130137|Name=jgi.p|Trimin1|347591|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=200bp
MPVDEGALTSRQEEALELYGSAHKARLALLGEKHPDTVAVRNNIAELLER
MGRADESLAMRERILQSLGVSQKDLAEMENVDEKAFNEQKMKTDEKWDEI
QAEMIAEQRKQRQKVIKPDPTKLFSTKPKQTSRNAPALDTRIAQTPLNAS
GSPVVDADEFVAISFSAEESSCSGGQEDDDDDWEAYADEICRKPPPPTG*

mRNA from alignment at Contig_13:1387783..1392662-

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_5867 ID=mRNA_5867|Name=jgi.p|Trimin1|347591|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=4880bp|location=Sequence derived from alignment at Contig_13:1387783..1392662- (Tribonema minus UTEX_B_3156 )
TGACAGCGACCGCCACCAACAACCTTGCCTACCATCTGGCAACTTCCATG
CCAGGTGTGCTACAATGACCATACGCGTGTCGGAGTCAACTGCGTGTTGC
AGTTTGCACTGCCCCCTCTCAAATTGCTGCTTGAATGCGCTTGAAGCCAG
TTCATAACATTGCACTCATGATGTCATTCTTGTCAACACTGCCTATGTAC
AGACGTAGCAGAACAACATAGAAGTATAAGTTTTTCCATGAGTGTGCACC
CTCCCACGAGGCCGTGGCGACCAATGTGATTACCTAACCATAAAGTGCAC
TTGCAGCCTTTGGTGCTTTTGTATGTGACGGCATGCGTAATACAACAGAG
TGAGTACATTGGCCCAGGCTTGCTAAACAACTCTAGAACCAAGCTGTGCT
CAGAGGCCTTCAAGATCAGTTAGGAAATGTCCACATGATATGGGCTCTCT
TGCAACTGTGCACACGCACAAATTCAAAAGTTACTGGCTGCTGCATCCAC
TTTTAAGATTTCTTCAACATGAGATGGGCTCTCTAATTGAACTGTGCGCA
TGTACAAATTCTTAAACTTTCTGGCTGCTGCTCTGACATTGCGCACACTT
ATACAGCAACTACACGTCATCACAGCATGCTGACTTTTCACGAGTGGGCT
CTGGAACGTGTAGAAGCATACCAATTGTCGCAATAAATGCTTTTTATAGC
GCTGATGATTGATGGTGGCTCTCTACTGTTCACCACAAGACTCAACCCCA
TCACTCACATGCTAAGAACTCGTGGCTGCTGCAGTGGATGAGGGAGCCCT
GACTTCAAGGCAGGAGGAAGCGCTGGAGCTGTATGGCAGTGCTCACAAGG
CGCGCTTGGCCCTGCTAGGCGAGAAGCACCCTGATACCGTGGCAGTGCGC
AACAACATTGCAGAACTGCTGGAAAGGTGAGCTGGCTTTCTGCAACGTAA
TTTATGCTCAGTGTGTTCCAGCGAAATCGATATATATACTATGACACTAC
GACAGTGAGCAACAAGAGACCTGGTCTGATGTGAAGCACTCAAGTTGAAG
GAGCACATGTTACTTTGTGTGATCTGCTGTACTGTAGAGTTAAATCCACA
CTGAGAATCTCAGGCAATTGTGATTGTCAAGCAGCGGCTCACAGACGCAT
ATTGCGTGACCGCGCTGTATGCTGAGAACACAAAGAGGCGCCATGGCAGT
TCTGCAGTAGCAATCAATCCTCAAACAATTGGTGTGGCAGCCCCATTGAT
GTGAACAACAGCAGATAAGCTGCAAGGAGCATAATGAGAGAGTGTCAGTG
CGCCACAATGTTTCTTAGCTGGTGGAATTGCGAGTGAAGTCAGCAGATGC
AACTGTGCATGCGTAGGCACCATCATGTACCACCATGCGTTGCTGCTGCA
TTGGCCACCGTTGCCATTAAGCAAGACTACAGCAGACATGCGCTACTCAG
TGCAGGCGTAGGGCACGACAGCGCATCACGTTATGCGTACAGTGCACTAC
ATGCTGCGAGCTGGCGCTGTGGCGGTCAGCGAGAGTACCACAAAGCTGTC
AAAAACAAAATTTCAGCAAGGATCAGTGCAGGTTGTACACGGCAATTTGC
CTGCTGGGACATCAGTCTTCATGTCGCCTGTCCGCACAACGTTCTCCGTT
TGATTTTGCCATGTGCGTCTGACGGCCCATGTTCACCCCACTCCGTCTAC
GTTTGTGTTGTGTGCTCCGTCGCATGTGTGTTCCAGCCTGCGTCCATGTG
TCGAATGGAATGTATGTACATGTATGTGGGTGTTGATGCAGCCTATTTTT
CATGTGACACCACTTGCAACTCCAGCCACACATCTCATGCTTGGGTGGGT
CCTGCAACAGACACTTGGAGTATACGTTGCACTTGGACAAAACCGATCCG
TAGGTATGTTGGTGATGTGTTGTTCTGCCACTGTGTTTGATCTGTTGCAT
GCAGGATGGGCCGCGCCGATGAGTCGCTGGCCATGCGTGAGAGAATCCTG
CAGTCACTTGGTGTGTCGCAGAAGGACCTGGCCGAGATGGAGAATGTGGA
CGAGAAGGCATTCAAGTGAGTCACATTGCTGCTGAAAATTGTACTGTACA
ATTTGCGAGATGGAGGTCACAGCCTGTGACTGCAGCGCACCTTTGACCTC
AAGGCTAGAGCCAGTAGTTCAAGGCGGTGCGCACATGACAGCAGTCATAA
GAACCGAAACAGCAAGCAAGCACGCCTCGGCGTTTTTGGTCAAAGCGCCA
CGAGAAGGGCGAGAAGCATTGGCATGTTTGCTGAGAAACTGCTGAGCAAT
TAGTCAAGAGCGGTGAGCTGCAGCCATGCGTATTGACTGTACCGTCGGCA
TCTGCTTGCTGCACACGTTATGATGTCACTGCCCCAATTCAGATGTTGAC
GACTGAGCGCAACATTGAGAGGCAAGTGCTGCAGATATCATACCTCACAC
TGGAGTAGCACGTATTCTTGTCACGAGATGCCTCTGTGCTCAGTAAAATA
CAACTGTGCCAGCTGCGTTGCTGTTGCAGTAAGAAGACTTGAGGACGCTT
GTACTGATGTATCCCATCTTCAAATCTGTCACTTCCTTCCTCCTCAGTGA
GCAGAAGATGAAAACCGACGAGAAGTGGGACGAGATACAGGCGGAGATGA
TAGCAGAGCAACGCAAACAGCGCCAAAAGGTCATCAAGCCAGATCCCACC
AAGCTGTTCAGCACCAAGCCCAAACAGACAAGTTCAGGGCGCCCAATGAG
GCCTCATGTCAATCCCAGCAATAAGGCCTAGCCTGGGTGAGAATTGCTGC
CCTTGCCTCCGGGAACCTCTGCGTTGAACCGATAGGCGGAAACAGCAACG
GCACTGATGACAGCTGTCACACACAGCAGCAGCAGCAGTGCACACAGCAG
CGCACTAGACTACCATTGGTTGCAATGAGCATTAGCAGTGGACGCAGTAG
TTTGTTGGCTGCTGCAGTGTGGCATTACTGCTGTGCCGCAAAAGCGCCAG
GCAGAAATGCACCGGCGCTCGACACGAGAATTGCGCAGACGCCTCTCAAC
GCCTCTGGGTCTCCCGTGGTAGATGCAGACGAGTTTGTCGCGATCAGCTT
CAGGTCAGCAACAGCGCAGAGTGTGTGAGGCCAGTAGAGGGGACTGCGGT
TGCAATTAGGACAGCAGAAGCAAGTGCAACGGTGTTGGCGCTGAAGGAGG
CAGTCTACACCAGACCTATGCATGAATTGGGGCAATTGTGGGTACATGAC
CTTCAGTAGTAGCTGCAACGAGCTGGCATGAGCACCACAAATTAAAGCGT
AGCTGCATTGTGTCATACCACAATCAAGGTGGTGGCGCTTTATCAACGGC
GATGCCTTCATGTGCATGTAACGTGGTTGTAGCTTGAGATTGCAAAACAA
GCAGCGCTATCAGGCTGGCACATTGTATACAAATGTATGCTGCAATATCA
CATCCTGCTTCAATGGAAATCCTTGCTTCTGCTCATTATGTTGGCGCTGT
GTTTTTGCACCTGATCGGGCATGTATTTGTCTGCTATATGCATCCAGGTG
TTGTTGATACAAATGCCATGCACGTTTCTTGGTTCCTGTATGATATGGCG
TAAAGGCGCCGATACACCTGGATGCAGAGCAAGGCATATCATACATCATG
TACTGCTGAGGCAGCACTCCAAATTGGTAGATGGAAGTACAGCCTTCAGT
ACCAGCCCCCTGTTGACGTAGGGACATGGCGATTGTCGTGGCAGCTAGCT
GGGATGGCGCGGCATCACCTACAGGCAGCACAGTTCATTCTGCGCAGGTC
ACTGACGAAGCGCATGGGCTTCTTAGCTCGGGTCGTTGACACGGCTTTGA
GTGAGACATGGCTGCACGCATTTGACGGGTTCTGTGCATGGACGCTTGAA
CGCATGCTGCACCTGCACGGCTGCGCTACCGCGGCAGTCATGAAGTCACA
CCTGCTGGCCGCCTGCACTGCTGGTGACAATGAGGTAGCCAGCAGTGGCA
GCGTGCTGGTATTGCCGCGCTTGGGCCCGCCAGAACTCACGGACATCGCA
GTGCCACTGCGGGCGTCACGGTTGCCGGAGCGACGAGGCGGTCTGGGCAT
GCCGCTTTTGGGGCTACTGGCACCAGCCGCATACACGGCCCAGGCATGCA
CAACACTGCGGCCTGCAATAATTCATGCCACTGTGGCAGCAGGGGCCCTG
AGGCTCGGCACTGACGAACACGGCGCAGTCACCTGGTTCGCGCAGCACTC
ATGCGCAATACGCGAGGACCAGGGACTGCCGCCAATCATCGAGGCCGTGC
GACGCTCTACGCGAGCGCTGACAGCTGATGGCGGCGAAAAATCACGCACA
GCTGTGGCCGAGCAGCTCCCAGCATCGTTGCTACGGTGGGCAGCGGATAC
AACGGCCGCAGCGTCGACGCTCCCCACTGCGGTGCAAGCGATCTACGCCG
CAACTGCCGTCACGGAGACGGGGACCACTGAGCCAGCCCCACACACCCAC
GGCATTGTGCCTGGCGCCGAGGCGGCCGCTGCGGCGGCGACCGTACCTGG
CCCTCAAGCCGCTGCCGCGGCTGCCTCTTCCACGCCCGCTAAAACACAAA
CTAGCGCGGAAGAAAGCAGCTGCAGCGGCGGGCAGGAGGACGACGACGAC
GACTGGGAGGCCTATGCTGACGAGATCTGCAGAAAGGTAGTGCCCCGCCG
CCGGCGCGGTCACTTCACGCACGGACTACAAGCCGGCCTTTCAAATGTTC
TTCGACGTCAATACGAGGACTGCCTGGTGGAGGACCTAGAGGCTGCCTCG
GCTGGTGCCGTGGGCAAGCCGACGCAGGCTACACTTATTGGTGACTTGCG
TGACACCAGCCGCCGCCGCCAACAGGCTAG

Coding sequence (CDS) from alignment at Contig_13:1387783..1392662-

>mRNA_5867 ID=mRNA_5867|Name=jgi.p|Trimin1|347591|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=600bp|location=Sequence derived from alignment at Contig_13:1387783..1392662- (Tribonema minus UTEX_B_3156 )
ATGCCAGTGGATGAGGGAGCCCTGACTTCAAGGCAGGAGGAAGCGCTGGA
GCTGTATGGCAGTGCTCACAAGGCGCGCTTGGCCCTGCTAGGCGAGAAGC
ACCCTGATACCGTGGCAGTGCGCAACAACATTGCAGAACTGCTGGAAAGG
ATGGGCCGCGCCGATGAGTCGCTGGCCATGCGTGAGAGAATCCTGCAGTC
ACTTGGTGTGTCGCAGAAGGACCTGGCCGAGATGGAGAATGTGGACGAGA
AGGCATTCAATGAGCAGAAGATGAAAACCGACGAGAAGTGGGACGAGATA
CAGGCGGAGATGATAGCAGAGCAACGCAAACAGCGCCAAAAGGTCATCAA
GCCAGATCCCACCAAGCTGTTCAGCACCAAGCCCAAACAGACAAGCAGAA
ATGCACCGGCGCTCGACACGAGAATTGCGCAGACGCCTCTCAACGCCTCT
GGGTCTCCCGTGGTAGATGCAGACGAGTTTGTCGCGATCAGCTTCAGCGC
GGAAGAAAGCAGCTGCAGCGGCGGGCAGGAGGACGACGACGACGACTGGG
AGGCCTATGCTGACGAGATCTGCAGAAAGCCGCCGCCGCCAACAGGCTAG