mRNA_5853 (mRNA) Tribonema minus UTEX_B_3156
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Overview
Homology
BLAST of jgi.p|Trimin1|347589 vs. uniprot
Match: A0A835Z9V1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9V1_9STRA) HSP 1 Score: 411 bits (1056), Expect = 3.560e-145 Identity = 202/202 (100.00%), Postives = 202/202 (100.00%), Query Frame = 1
Query: 1 MVPMTASERACAASHLALWKRLADGDLEPFKCNSTKRDMALILEDDALLSPYFVQRINMLLQHPDMAGMDLCFIGYSLPGAVRHKVKQALEQLKDDSRASQAKRGVKHGPTPMHVDFCWQAHAYLLSREGAKRLTARKPHESLIDAPVDITMATRMKSKRIAAMACHPALADQSHEYTDIVDVKSNAIQRVDTRGGAILQYL 606
MVPMTASERACAASHLALWKRLADGDLEPFKCNSTKRDMALILEDDALLSPYFVQRINMLLQHPDMAGMDLCFIGYSLPGAVRHKVKQALEQLKDDSRASQAKRGVKHGPTPMHVDFCWQAHAYLLSREGAKRLTARKPHESLIDAPVDITMATRMKSKRIAAMACHPALADQSHEYTDIVDVKSNAIQRVDTRGGAILQYL
Sbjct: 1 MVPMTASERACAASHLALWKRLADGDLEPFKCNSTKRDMALILEDDALLSPYFVQRINMLLQHPDMAGMDLCFIGYSLPGAVRHKVKQALEQLKDDSRASQAKRGVKHGPTPMHVDFCWQAHAYLLSREGAKRLTARKPHESLIDAPVDITMATRMKSKRIAAMACHPALADQSHEYTDIVDVKSNAIQRVDTRGGAILQYL 202
BLAST of jgi.p|Trimin1|347589 vs. uniprot
Match: A0A7S3JY73_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JY73_9STRA) HSP 1 Score: 63.5 bits (153), Expect = 3.270e-8 Identity = 49/148 (33.11%), Postives = 69/148 (46.62%), Query Frame = 1
Query: 4 VPMTASERACAASHLALWKRLADGDLEPFKCNSTKRDMALILEDDALLSPYFVQRINMLLQH-PDMAGMDLCFIGYSLPGAVRHKVKQALEQLKDDSRASQAKRGVKHGPTPMHVDFCWQAHAYLLSREGAKRLTARKPHESLIDAPV 444
VPM+ SER CAASH+ LW + A D +P LILEDD +L+P F QR L PD +D+ +GY PG ++L L+ + +D+ W HAY+L+ GA+ L P ++ D V
Sbjct: 695 VPMSPSERGCAASHIELWGKAAR-DHKP----------VLILEDDIVLAPQFNQRYAAALAALPD--DVDILLLGYWAPGTEHCLENRSLSTLRRF----------------LFLDYFWGLHAYVLTPRGARILLDNLPVDAPADVYV 813
BLAST of jgi.p|Trimin1|347589 vs. uniprot
Match: A0A2D8HU21_9GAMM (Glycosyl transferase n=3 Tax=Idiomarina TaxID=135575 RepID=A0A2D8HU21_9GAMM) HSP 1 Score: 55.5 bits (132), Expect = 9.200e-6 Identity = 61/196 (31.12%), Postives = 79/196 (40.31%), Query Frame = 1
Query: 10 MTASERACAASHLALWKRLADGDLEPFKCNSTKRDMALILEDDALLSPYFVQRINMLLQHPDMAGMDLCFIGYSL---PGAVRHKVKQALEQLKDDSRASQAKRGVKHGPTPMHVDFCWQAHAYLLSREGAKRLTARKPHESLIDAPVDITMATRMKSKRIAAMACHPALADQSHEYTDIVDVKSNAIQRVDTRGG 588
+T E AC SH WK + + D A+ILEDD +L P F Q LQ P A D F + L R K Q LE D V + PM A AYLLSR+GAK+L +R P PVD+ M + ++ + P D SH + D+ S A + R G
Sbjct: 73 LTMGEIACYMSHRKAWKTFLESE----------HDAAIILEDDIVLDPLFAQ-----LQKPLAALADSRFAQWDLIKLAQPFRPKESQPLETFGDFQL-------VDYKKPPMG------ACAYLLSRQGAKKLLSRVP----FFRPVDVDMQWQWETGA-HVLGLLPYTVDNSHTHES--DIFSVANRHASKRRG 233
BLAST of jgi.p|Trimin1|347589 vs. uniprot
Match: UPI000C774D86 (glycosyltransferase 25 family member-like n=1 Tax=Eurytemora affinis TaxID=88015 RepID=UPI000C774D86) HSP 1 Score: 55.8 bits (133), Expect = 1.220e-5 Identity = 44/149 (29.53%), Postives = 64/149 (42.95%), Query Frame = 1
Query: 7 PMTASERACAASHLALWKRLADGDLEPFKCNSTKRDMALILEDDALLSPYFVQRINMLLQH--PDMAGMDLCFIGYSLPGAVRHKVKQALEQLKDDSRASQAKRGVKHGPTPMHVDFCWQAHAYLLSREGAKRLTARKPHESLIDAPVD 447
P+ E C SH LW+ + + + DM LILEDD PYF+ ++ LL+ DL F+G R + K A E S + VD+ + AYLL++EGA+RL P + ++ PVD
Sbjct: 358 PLKMGEIGCFMSHYNLWQDILEKN----------HDMVLILEDDIRFEPYFISKLQKLLKELKERRNEWDLTFLG-------RKRSKNAKEPWLSGSDQL------------VQVDYTYWTLAYLLTKEGARRLVQGNPLDKMV--PVD 475
BLAST of jgi.p|Trimin1|347589 vs. uniprot
Match: D8LCR1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCR1_ECTSI) HSP 1 Score: 55.8 bits (133), Expect = 1.400e-5 Identity = 42/119 (35.29%), Postives = 58/119 (48.74%), Query Frame = 1
Query: 10 MTASERACAASHLALWKRLADGDLEPFKCNSTKRDMALILEDDALLSPYFVQRINM-LLQHPDMAGM------------DLCFIGYSLPGAVRHKVKQALEQLKDDSRASQAKRGVKHG 327
M SERACAASHL LW+R D L PF D LILEDDA L P F++ +LQ M + D+ ++G+ LP + + +A + K+ A+ GV+ G
Sbjct: 815 MHPSERACAASHLDLWRRHRDSKLAPFM-PEVHPDAVLILEDDAKLEPGFLEAAKATMLQAAAMDTVRKKKSIGLSKEWDIIYLGHILPVPIMDGIARASKTKKN---AANGNGGVEEG 929
BLAST of jgi.p|Trimin1|347589 vs. uniprot
Match: A0A6H5KX61_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KX61_9PHAE) HSP 1 Score: 55.5 bits (132), Expect = 1.620e-5 Identity = 42/119 (35.29%), Postives = 58/119 (48.74%), Query Frame = 1
Query: 10 MTASERACAASHLALWKRLADGDLEPFKCNSTKRDMALILEDDALLSPYFVQRINM-LLQHPDMAGM------------DLCFIGYSLPGAVRHKVKQALEQLKDDSRASQAKRGVKHG 327
M SERACAASHL LW+R D L PF D LILEDDA L P F++ +LQ M + D+ ++G+ LP + + +A + K+ A+ GV+ G
Sbjct: 242 MHPSERACAASHLDLWRRHRDSKLAPFM-PEVHPDAVLILEDDAKLEPGFLKAAKATMLQAAAMDTVRKKKSIGLSKEWDIIYLGHILPVPIMDGIARASKTKKN---AANGNGGVEEG 356
BLAST of jgi.p|Trimin1|347589 vs. uniprot
Match: A0A7Y8SFZ2_9GAMM (Glycosyltransferase family 25 protein n=1 Tax=Idiomarinaceae bacterium TaxID=1898113 RepID=A0A7Y8SFZ2_9GAMM) HSP 1 Score: 53.1 bits (126), Expect = 5.310e-5 Identity = 52/177 (29.38%), Postives = 77/177 (43.50%), Query Frame = 1
Query: 10 MTASERACAASHLALWKRLADGDLEPFKCNSTKRDMALILEDDALLSPYFVQRINMLLQHPDMAGMDLCFIGYSLPGAVRHKVKQALEQLKDDSRASQAKRGVKHGPTPMHVDFCWQAHAYLLSREGAKRLTARKPHESLIDAPVDITMATRMKSKRIAAMACHPALADQSHEYTDI 540
+TA E C SH+ W+++ D +L D A+ILEDD LL F I+ + Q D ++ S P + + +A E + D + K PT A ++SREGAKRL A+KP P+DI + + I P +AD S E ++I
Sbjct: 64 LTAGEIGCYLSHIKCWEKIIDDNL----------DYAVILEDDLLLDRQFASVISTIPQLKS----DWHYLKLSCP--FKPRPYKATETVMGDDNLDVSLVNYKKSPTG--------TVAQVVSREGAKRLLAKKPP---FFRPIDIDLQWSWEVG-ITIQGLVPYVADVSDEPSEI 212 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|347589 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_5853 ID=mRNA_5853|Name=jgi.p|Trimin1|347589|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=629bp|location=Sequence derived from alignment at Contig_13:1254035..1256496- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGGTGCCCATGACGGCCAGCGAGCGGGCCTGCGCAGCGAGCCACTTGGCback to top protein sequence of jgi.p|Trimin1|347589 >Trimin1|347589|estExt_Genemark1.C_Ctg_130118 ID=Trimin1|347589|estExt_Genemark1.C_Ctg_130118|Name=jgi.p|Trimin1|347589|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=203bp MVPMTASERACAASHLALWKRLADGDLEPFKCNSTKRDMALILEDDALLSback to top mRNA from alignment at Contig_13:1254035..1256496- Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_5853 ID=mRNA_5853|Name=jgi.p|Trimin1|347589|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2462bp|location=Sequence derived from alignment at Contig_13:1254035..1256496- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_13:1254035..1256496- >mRNA_5853 ID=mRNA_5853|Name=jgi.p|Trimin1|347589|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=609bp|location=Sequence derived from alignment at Contig_13:1254035..1256496- (Tribonema minus UTEX_B_3156 )back to top |