mRNA_5797 (mRNA) Tribonema minus UTEX_B_3156
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Overview
Homology
BLAST of jgi.p|Trimin1|347558 vs. uniprot
Match: A0A836CNZ7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CNZ7_9STRA) HSP 1 Score: 662 bits (1709), Expect = 3.550e-238 Identity = 372/372 (100.00%), Postives = 372/372 (100.00%), Query Frame = 2
Query: 167 MLIRSVCPLAGVSPEKITGQAARRRLPTSGAASSASDVGSGSDSLSAAPXXXXXXXXXTVLSSLPPTAVSSGTXXXXXXXXXXXXXXXXGKFAIQLVKVGDSDAAYDAYMERAKARWEAIIVGDVVDIVGMPSEFAFLDFFTDVPQTPLPRVMNVDDIVIGYQFATIDGLGNTATQLNTLGATAVIQTRPADIGSFPITAGMLFDVADIDLMIQEGLFDVVVMHEMGHALGFSSDMWPAYASQCGTSCAVFDAGAPNGCVASQTYKDLGLPGELTLQSSGTAGDGSYCAHWDEATLGDELMTPVIGTGANPLTAITIAAFEDCGYEVSYATAEDIALISPVAAGAKQSPVNRALRQRRRALTAPPRVFRNAV 1282
MLIRSVCPLAGVSPEKITGQAARRRLPTSGAASSASDVGSGSDSLSAAPXXXXXXXXXTVLSSLPPTAVSSGTXXXXXXXXXXXXXXXXGKFAIQLVKVGDSDAAYDAYMERAKARWEAIIVGDVVDIVGMPSEFAFLDFFTDVPQTPLPRVMNVDDIVIGYQFATIDGLGNTATQLNTLGATAVIQTRPADIGSFPITAGMLFDVADIDLMIQEGLFDVVVMHEMGHALGFSSDMWPAYASQCGTSCAVFDAGAPNGCVASQTYKDLGLPGELTLQSSGTAGDGSYCAHWDEATLGDELMTPVIGTGANPLTAITIAAFEDCGYEVSYATAEDIALISPVAAGAKQSPVNRALRQRRRALTAPPRVFRNAV
Sbjct: 1 MLIRSVCPLAGVSPEKITGQAARRRLPTSGAASSASDVGSGSDSLSAAPXXXXXXXXXTVLSSLPPTAVSSGTXXXXXXXXXXXXXXXXGKFAIQLVKVGDSDAAYDAYMERAKARWEAIIVGDVVDIVGMPSEFAFLDFFTDVPQTPLPRVMNVDDIVIGYQFATIDGLGNTATQLNTLGATAVIQTRPADIGSFPITAGMLFDVADIDLMIQEGLFDVVVMHEMGHALGFSSDMWPAYASQCGTSCAVFDAGAPNGCVASQTYKDLGLPGELTLQSSGTAGDGSYCAHWDEATLGDELMTPVIGTGANPLTAITIAAFEDCGYEVSYATAEDIALISPVAAGAKQSPVNRALRQRRRALTAPPRVFRNAV 372
BLAST of jgi.p|Trimin1|347558 vs. uniprot
Match: A0A836CL50_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CL50_9STRA) HSP 1 Score: 315 bits (808), Expect = 1.820e-102 Identity = 160/271 (59.04%), Postives = 200/271 (73.80%), Query Frame = 2
Query: 440 FAIQLVKVGDSDAAYDAYMERAKARWEAIIVGDVVDIVGMPSEFAFLDFFTDVPQTP-LPRVMNVDDIVIGYQFATIDGLGNTATQLNTLGATAVIQTRPADIGSFPITAGMLFDVADIDLMIQEGLFDVVVMHEMGHALGFSSDMWPAYASQCGTSCAVFDAGAPNGCVASQTYKDLGLPGELTLQSSGTAGDGSYCAHWDEATLGDELMTPVIGTG-ANPLTAITIAAFEDCGYEVSYATAEDIALISPVAAGAKQSPVNRALRQRRRA 1246
F+IQLVK GDSD AYD +ME A+ RW+ +IVGDV DI G+ S+ FLD F + TP +P V+++DDIVIGYQFA +DG G LG T +IQ+R DIG+FP++A M FD+AD+ M ++G F+ VV+HEMGHALGFS+DMW ++ S+CG +C VFDAG P+GC AS YK LGLPG+L L SG DGSYCAHWDEATLGDELMTP + TG ANPLTAITIAAFED GY V+Y A+ LISP A ++ V+R L++RR+A
Sbjct: 24 FSIQLVKFGDSDPAYDKFMEAARDRWQNVIVGDVYDIRGVSSDQLFLDVFKGIKPTPEIPGVVDIDDIVIGYQFAKMDGRGEV------LGGTFIIQSRTDDIGAFPVSAAMTFDIADVKAMAKDGSFETVVLHEMGHALGFSADMWASFESKCGKTCKVFDAGTPHGCKASDKYKALGLPGQLALDHSGKPKDGSYCAHWDEATLGDELMTPYMNTGGANPLTAITIAAFEDMGYTVNYDAADSAELISPAPANWREHTVSRMLQRRRQA 288
BLAST of jgi.p|Trimin1|347558 vs. uniprot
Match: A0A835ZDU9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDU9_9STRA) HSP 1 Score: 285 bits (728), Expect = 1.120e-89 Identity = 152/285 (53.33%), Postives = 191/285 (67.02%), Query Frame = 2
Query: 434 GKFAIQLVKVGDSDAAYDAYMERAKARWEAIIVGD-VVDIVG--MPSEFAFLDFFTDVPQTPLPRVMNVDDIVIGYQFATIDGLGNTATQLNTLGATAVIQTRPADIGSFPITAGMLFDVADIDLMIQEGLFDVVVMHEMGHALGFSSDMWPAYASQCGTSCAVFDAGAPNGCVASQTYKDLGLPGELTLQSSGTAGDGSYCAHWDEATLGDELMTPVIGTGANPLTAITIAAFEDCGYEVSYATAEDIALISPVAAGAKQS---PVNRALRQRRRALTAPPRVF 1270
GK+ I+LVK+GDSDA YDA+ +AK RWE II GD V+DI P + F +FF ++ P + VDDI I Y+ + IDG G LG T++I+ R GSFPI+A M FD D+D MI +G+F+ ++HEMGHALGFS++MW YAS+CG SCA FD GAP GC AS+TY LGLPG+L + ++G +GDG YC HWDE LGDELMTPV+G+G PLTAI+I+AFED GY VSY TA I LI+ V A QS P R+L RR+ T PR F
Sbjct: 75 GKYNIELVKIGDSDAKYDAFFAKAKQRWEQIITGDNVMDIPADKAPEDGWFSNFFEELE----PYIAAVDDITIAYRISPIDGYGLV------LGETSIIRFRTEQYGSFPISAAMTFDTEDVDGMIDDGVFESTILHEMGHALGFSANMWALYASKCGASCAAFDEGAPGGCAASRTYARLGLPGQLRMHAAGGSGDGQYCGHWDELQLGDELMTPVVGSGMQPLTAISISAFEDMGYLVSYETAAPIELITTVPAEWSQSATLPFTRSLLSRRKRSTFVPRAF 349
BLAST of jgi.p|Trimin1|347558 vs. uniprot
Match: A0A835Z0U7_9STRA (Rhomboid domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0U7_9STRA) HSP 1 Score: 265 bits (676), Expect = 9.460e-78 Identity = 146/303 (48.18%), Postives = 182/303 (60.07%), Query Frame = 2
Query: 434 GKFAIQLVKVGDSDAAYDAYMERAKARWEAIIVGDVVDIVGMPSEFAFLDFF-TDVPQTPLPRVMNVDDIVIGYQFATIDGLGNTATQLNTLGATAVIQTRPADIGSFPITAGMLFDVADIDLMIQEGLFD-------------VVVMHE------------------MGHALGFSSDMWPAYASQCGTSCAVFDAGAPNGCVASQTYKDLGLPGELTLQSSGTAGDGSYCAHWDEATLGDELMTPVIGTG--ANPLTAITIAAFEDCGYEVSYATAEDIALISPVAAGAKQSPVNRALRQRR 1240
G F IQL+K GD DA YD +MERA ARW +IVGDV D+ G + F DFF + P PLP ++VDDI+IGYQ A IDG LN +G+TA + RP + GSFP +AGM FD AD D I +G D V++HE MGHALGF+ +WP Y SQCGTSC F GAPNGC+ASQ + +LG G L + G+ DGS+C+HWDE LG+ELMTP I +PLT ITIAA+ED GY+VSYA+A+ I+ + P A K +P+NR L RR
Sbjct: 419 GDFNIQLLKFGDGDAKYDVFMERAAARWMQVIVGDVQDMPGNSAADLFQDFFGANAPAQPLPDSIDVDDIIIGYQIAPIDG------PLNVVGSTAALAVRPPEYGSFPYSAGMTFDSADADAAIADGTSDXXXXXXXXXXXXXAVILHEXXXXXXXXXXXXXXXXXXMGHALGFAESLWPLYPSQCGTSCTYFATGAPNGCLASQKFTELGFDGPLPMYFQGSPNDGSFCSHWDETVLGNELMTPGIAEAEVTSPLTEITIAAYEDIGYQVSYASADPISQVVPAQARWKDTPLNRMLAARR 715
BLAST of jgi.p|Trimin1|347558 vs. uniprot
Match: A0A835YMD2_9STRA (Phosphatase 2C-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YMD2_9STRA) HSP 1 Score: 254 bits (650), Expect = 2.420e-74 Identity = 140/271 (51.66%), Postives = 176/271 (64.94%), Query Frame = 2
Query: 434 GKFAIQLVKVGDSDAAYDAYMERAKARWEAIIVGDVVDIVGMPSEFAFLDFFTDVPQTPLPRVMNVDDIVIGYQFATIDGLGNTATQLNTLGATAVIQTRPADIGSFPITAGMLFDVADIDLMIQEGLFDVVVMHEMGHALGFSSDMWPAYASQCGTSCAVFDAGAPNGCVASQTYKDLGLPGELTLQSSGTAGDGSYCAHWDEATLGDELMTPVIGTGANPLTAITIAAFEDCGYEVSYATAEDIALISPVAAGAKQSPVNRALRQRRRA 1246
G + I+LV +G +A YD YM RAK RWE +I+GDV D+ G+ + A F +P ++++VDDIVI Y+FA IDG G T NTLG+T V Q R A G P++A M+FD D+D I+EG F V +HEMGHALGF S + +AS+CGTSC V+D G P GC AS + +LGL G+L +Q G GDGSYC+HW E LGDELMTP NPLTAITI AFED Y+VSY +A+ I I+P A K S NR L+QRR A
Sbjct: 397 GNYQIELVNLGKPNAKYDKYMARAKQRWEQVIIGDVPDVNGITVDQALGGAFR-LPPNVGNQLVDVDDIVILYEFAQIDG-GGTPAAGNTLGSTTVTQFRSAAQGGAPLSAYMVFDSHDVDTFIREGTFAAVALHEMGHALGFGS--FNQFASKCGTSCKVYDKGVPGGCAASDKFTELGLAGQLLVQYIGKEGDGSYCSHWFEGQLGDELMTPYASQFLNPLTAITIGAFEDMSYQVSYDSADPIDKITPTTADIKASGTNRLLQQRREA 663
BLAST of jgi.p|Trimin1|347558 vs. uniprot
Match: A0A835YMK8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YMK8_9STRA) HSP 1 Score: 235 bits (599), Expect = 1.170e-69 Identity = 136/283 (48.06%), Postives = 174/283 (61.48%), Query Frame = 2
Query: 437 KFAIQLVKVGDSDAAYDAYMERAKARWEAIIVGDVVDIVGMPSEFAFLDFFTDVPQTPLPRVMNVDDIVIGYQFATIDGLGNTATQLNTLGATAVIQTRPADIGSFPITAGMLFDVADIDLMIQEGLFDVVVMHEMGHALGFSSDMWPAYASQCGTSCAVF--DAGAPNGCVASQTYKDLGLPGELTLQSSGTAGDGSYCAHWDEATLGDELMTPVIG-TGANPLTAITIAAFED----------CGYEVSYATAEDIALISPVAAGAKQSPVNRALRQRRRA 1246
+F I LV VG+ + YD +ME AK RWEA+IVGDV D+ G P+ F + +P + +VDDI+I YQFA IDG G+++ + LG T + + R A GSFPI+A M FD A++D I G FDVVV+HEM HALGF + S CGTSC + +AGA +GC+AS Y +LG L ++ G GDGSYC HWDE LGDELMTP I +G NPLT +TIA+FED CG VSY A+ + ISP+ G + + NR LRQRR A
Sbjct: 119 RFNIVLVNVGEPNPKYDQFMEGAKLRWEAVIVGDVPDLPGFPTADLFGGYL-QYEGDGVPDMTDVDDIIIAYQFAPIDGFGDSSGDM--LGTTMITKYRDASQGSFPISAQMTFDTANVDADIDAGAFDVVVLHEMAHALGFGDWATGKFTSPCGTSCLDYASNAGA-DGCIASTKYAELGYMDPLLVEFGGAPGDGSYCCHWDEGQLGDELMTPGINYSGYNPLTMLTIASFEDLGYVVSSQSLCGAAVSYDAADPMDAISPLGVGWRHTRANRHLRQRREA 397
BLAST of jgi.p|Trimin1|347558 vs. uniprot
Match: A0A835YWX7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWX7_9STRA) HSP 1 Score: 209 bits (532), Expect = 5.560e-61 Identity = 127/290 (43.79%), Postives = 162/290 (55.86%), Query Frame = 2
Query: 494 MERAKARWEAIIVGDVVDIVGM-----PSEFAFL----------------------------------DFFTDVPQT-PLPRVMNVDDIVIGYQFATIDGLGNTATQLNTLGATAVIQTRPADIGSFPITAGMLFDVADIDLMIQEGLFDVVVMHEMGHALGFSSDMWPAYASQCGTSCAVFDAGAPNGCVASQTYKDLGLPGELTLQSSGTAGDGSYCAHWDEATLGDELMTPVIGTGANPLTAITIAAFEDCGYEVSYATAEDIALISPVAAGAKQSPVNRALRQRRR 1243
M AKARWEAI+VGDVVD+ + P+ AF+ D +T Q L V+ VDDIVI Y+FA +DGLG++ NTLG+T + R PI+A + FDVAD+D I G F VV+HEMGHALGF + Y S+CGT+C V++A AP+GCVA+ Y++LG EL + G DGSYC+HW E LGDELM+P I NPLTAI+IA D GY+V Y TA+ I IS + A K SP N L +R+R
Sbjct: 1 MLAAKARWEAIVVGDVVDVATLSRESAPANDAFVLXXXXXXXXXXXXXXXXXXALWYAELLGVSSSSYDVYTSGGQPLNLTDVIPVDDIVIAYEFAQMDGLGDSDG--NTLGSTLLTSFRDVSNSGLPISAFLKFDVADVDAFIAAGTFQAVVLHEMGHALGFG--YFSNYPSRCGTTCVVYEASAPHGCVAAAKYRELGFADELLVHFDGEPSDGSYCSHWYEGQLGDELMSPFISDAHNPLTAISIAGMADMGYQVVYDTADPIDTISHLTAALKASPTNTRLARRQR 286
BLAST of jgi.p|Trimin1|347558 vs. uniprot
Match: A0A836C8X7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8X7_9STRA) HSP 1 Score: 153 bits (386), Expect = 4.260e-39 Identity = 94/257 (36.58%), Postives = 132/257 (51.36%), Query Frame = 2
Query: 440 FAIQLVKVGDSDAAYDAYMERAKARWEAIIVGDVVDIVGM--PSEFAFLDFF---TDVPQTPLPRVMNVDDIVIGYQFATIDGLGNTATQLNTLGATAVIQTRPADIGSFPITAGMLFDVADIDLMIQEGLFDVVVMHEMGHALGFSSDMWPAYASQCGTSCAVFDAGAPNGCVASQTYKDL---------GLPGELTLQSSGTA-GDGSYCAHWDEATLGDELMTPVIGTGANPLTAITIAAFEDCGYEVSYATAE 1165
F I L+ +G + A Y Y E+AK RWE I+VGD++ P F +F +D VDDIVIGY+ IDG + A A PI+A M FD AD+D +I+ G F VV+HEMGHALG WP ++CG +C + GA CVA ++ L + G L L+++G + DG+ C HW E LGDE+MT I + NP++ +++ A ED GY+V+Y A+
Sbjct: 31 FDITLLPIGKTPAKYHKYFEKAKKRWEEIVVGDMIGYTAKEAPDSGWFGGYFGKGSDFHGA-------VDDIVIGYKIRAIDGKNKVVGNSEIIKERAGRAAHKARQQQTPISAVMEFDSADVDDLIKTGYFQTVVLHEMGHALGIGY-AWPTPRAKCGGTCTAYQEGANWDCVAELKFRHLVTSRPDLKIDITGGLQLENTGASKADGTACEHWSETQLGDEIMTAYISSTDNPISIVSVGALEDLGYKVNYKAAD 279
BLAST of jgi.p|Trimin1|347558 vs. uniprot
Match: A0A836CQF3_9STRA (Cation_ATPase_N domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CQF3_9STRA) HSP 1 Score: 142 bits (358), Expect = 7.200e-33 Identity = 101/280 (36.07%), Postives = 141/280 (50.36%), Query Frame = 2
Query: 440 FAIQLVKVGDSDAAYDAYMERAKARWEA------IIVGDVVDIVGMPSEF-AFLDFFTDVPQTPLPRVM-------NVDDIVIGYQFATIDGLGNTATQLNTLGATAVIQTRPADIGSFPITAGMLFDVADIDLMIQEGLFDVVVMHEMGHALGFSSDMWPAYASQCGTSCAV------------FDAGAPNGCVASQTYK--DLGLPGELTLQSSGTAGDGSYCAHWDEATLGDELMTPVIGTGANPLTAITIAAFEDCGYEVSYATAEDIALISPVAA 1195
F IQL+ + Y Y +AKARW+A +IVGDV+D+ + + D + R++ NVDDIVIGY+ IDG Q + + A PI+ M FD AD D +I+EG+FD VV+HEMGH LG + WP ++CG SC V + +GA C A Q ++ DLG+ L L++ G G + C HW E LG+ELMT + G NPL+ ITI A D GY+V Y+ A+ + + +AA
Sbjct: 136 FNIQLIAADGTPDKYHEYFAKAKARWQAKARRQQVIVGDVLDVPKSTTPVNGWFDGNLGTMGSGGQRIVATNEYYGNVDDIVIGYKITYIDGKNGVLGQAGSTYVRGGNVSHDASQMDIPISGTMEFDSADADELIKEGVFDQVVLHEMGHVLGIGN--WPTTLNRCG-SCEVKHATCGDACEPYYTSGATGACHAQQQFEKLDLGVGPNLLLETKG--GISTECTHWSEEQLGNELMTGWLD-GNNPLSTITIGALHDLGYQVDYSVADPFEIQAAMAA 409
BLAST of jgi.p|Trimin1|347558 vs. uniprot
Match: A0A835Z348_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z348_9STRA) HSP 1 Score: 131 bits (330), Expect = 1.190e-30 Identity = 92/261 (35.25%), Postives = 123/261 (47.13%), Query Frame = 2
Query: 440 FAIQLVKVGDSDAAYDAYMERAKARWEAIIVGDVVDIVGMP-----SEFAFLDFFTDVPQTPLPRVMNVDDIVIGYQFATIDGLGNTATQLNTLGATAVIQTRPADIGSFPITAGMLFDVADIDLMIQEGLFDVVVMHEMGHALGFSSDMWPAYASQCG--TSCAV-----FDAGAPNGCVASQTYKDLGLPGELTLQSSGTAGDGSYCAHWDEATLGDELMTPVIGTGA--NPLTAITIAAFEDCGYEVSYATAEDIALI 1180
F IQL+ + A E AKARWE +I GD+ D+ + E D F+ VDD+VIGY+ A+IDG NT + D+ + PI+ M FD DI + G V+HEMGH LG ++ WP A CG SC + +GA C A YK++ G L L+++ T +GS C+HW EA L ELMTP +PLT +TI A D GY V Y A+ A +
Sbjct: 118 FNIQLIAATGTPPEVVAVFEEAKARWEQVITGDIPDVAAVDFDWFNGEMGDADAFSGA----------VDDVVIGYRVASIDGADNTLANAGP----RFFRNSDEDMYTRPISGVMTFDEIDIQSQLAAGTLLPTVLHEMGHVLGLGTN-WPTPAG-CGQVASCKSGTPFQYASGATGDCYADLKYKEIVSGGILMLETA-TGDEGSDCSHWSEAQLQSELMTPSTSLSGVPDPLTIVTIGAMRDLGYSVDYTAADSFAAL 361 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|347558 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_5797 ID=mRNA_5797|Name=jgi.p|Trimin1|347558|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1285bp|location=Sequence derived from alignment at Contig_13:509628..517565+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. GTCACTGCGGCCTGCCCCGCCGCTGTTGCGGCGCTGCGGGTGTGGCATCCback to top protein sequence of jgi.p|Trimin1|347558 >Trimin1|347558|estExt_Genemark1.C_Ctg_130050 ID=Trimin1|347558|estExt_Genemark1.C_Ctg_130050|Name=jgi.p|Trimin1|347558|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=373bp MLIRSVCPLAGVSPEKITGQAARRRLPTSGAASSASDVGSGSDSLSAAPTback to top mRNA from alignment at Contig_13:509628..517565+ Legend: exonfive_prime_UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_5797 ID=mRNA_5797|Name=jgi.p|Trimin1|347558|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=7938bp|location=Sequence derived from alignment at Contig_13:509628..517565+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_13:509628..517565+ >mRNA_5797 ID=mRNA_5797|Name=jgi.p|Trimin1|347558|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1119bp|location=Sequence derived from alignment at Contig_13:509628..517565+ (Tribonema minus UTEX_B_3156 )back to top |