mRNA_5793 (mRNA) Tribonema minus UTEX_B_3156
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Overview
Homology
BLAST of jgi.p|Trimin1|347555 vs. uniprot
Match: A0A835ZDU9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDU9_9STRA) HSP 1 Score: 695 bits (1794), Expect = 9.490e-253 Identity = 352/352 (100.00%), Postives = 352/352 (100.00%), Query Frame = 1
Query: 1 MGVRAGLEPLASVLGAASGYRRLAVRLSGGLPVENHDLEAEELAEHAGGQGDPSAAPTSSPLRADADRKEGDSNGKYNIELVKIGDSDAKYDAFFAKAKQRWEQIITGDNVMDIPADKAPEDGWFSNFFEELEPYIAAVDDITIAYRISPIDGYGLVLGETSIIRFRTEQYGSFPISAAMTFDTEDVDGMIDDGVFESTILHEMGHALGFSANMWALYASKCGASCAAFDEGAPGGCAASRTYARLGLPGQLRMHAAGGSGDGQYCGHWDELQLGDELMTPVVGSGMQPLTAISISAFEDMGYLVSYETAAPIELITTVPAEWSQSATLPFTRSLLSRRKRSTFVPRAFELA 1056
MGVRAGLEPLASVLGAASGYRRLAVRLSGGLPVENHDLEAEELAEHAGGQGDPSAAPTSSPLRADADRKEGDSNGKYNIELVKIGDSDAKYDAFFAKAKQRWEQIITGDNVMDIPADKAPEDGWFSNFFEELEPYIAAVDDITIAYRISPIDGYGLVLGETSIIRFRTEQYGSFPISAAMTFDTEDVDGMIDDGVFESTILHEMGHALGFSANMWALYASKCGASCAAFDEGAPGGCAASRTYARLGLPGQLRMHAAGGSGDGQYCGHWDELQLGDELMTPVVGSGMQPLTAISISAFEDMGYLVSYETAAPIELITTVPAEWSQSATLPFTRSLLSRRKRSTFVPRAFELA
Sbjct: 1 MGVRAGLEPLASVLGAASGYRRLAVRLSGGLPVENHDLEAEELAEHAGGQGDPSAAPTSSPLRADADRKEGDSNGKYNIELVKIGDSDAKYDAFFAKAKQRWEQIITGDNVMDIPADKAPEDGWFSNFFEELEPYIAAVDDITIAYRISPIDGYGLVLGETSIIRFRTEQYGSFPISAAMTFDTEDVDGMIDDGVFESTILHEMGHALGFSANMWALYASKCGASCAAFDEGAPGGCAASRTYARLGLPGQLRMHAAGGSGDGQYCGHWDELQLGDELMTPVVGSGMQPLTAISISAFEDMGYLVSYETAAPIELITTVPAEWSQSATLPFTRSLLSRRKRSTFVPRAFELA 352
BLAST of jgi.p|Trimin1|347555 vs. uniprot
Match: A0A836CNZ7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CNZ7_9STRA) HSP 1 Score: 286 bits (731), Expect = 6.180e-91 Identity = 153/288 (53.12%), Postives = 192/288 (66.67%), Query Frame = 1
Query: 223 GKYNIELVKIGDSDAKYDAFFAKAKQRWEQIITGDNVMDIPADKAPEDGWFSNFFEELE----PYIAAVDDITIAYRISPIDGYGLV------LGETSIIRFRTEQYGSFPISAAMTFDTEDVDGMIDDGVFESTILHEMGHALGFSANMWALYASKCGASCAAFDEGAPGGCAASRTYARLGLPGQLRMHAAGGSGDGQYCGHWDELQLGDELMTPVVGSGMQPLTAISISAFEDMGYLVSYETAAPIELITTVPAEWSQSATLPFTRSLLSRRKRSTFVPRAFELA 1056
GK+ I+LVK+GDSDA YDA+ +AK RWE II GD V+DI P + F +FF ++ P + VDDI I Y+ + IDG G LG T++I+ R GSFPI+A M FD D+D MI +G+F+ ++HEMGHALGFS++MW YAS+CG SCA FD GAP GC AS+TY LGLPG+L + ++G +GDG YC HWDE LGDELMTPV+G+G PLTAI+I+AFED GY VSY TA I LI+ V A QS P R+L RR+ T PR F A
Sbjct: 90 GKFAIQLVKVGDSDAAYDAYMERAKARWEAIIVGD-VVDIVG--MPSEFAFLDFFTDVPQTPLPRVMNVDDIVIGYQFATIDGLGNTATQLNTLGATAVIQTRPADIGSFPITAGMLFDVADIDLMIQEGLFDVVVMHEMGHALGFSSDMWPAYASQCGTSCAVFDAGAPNGCVASQTYKDLGLPGELTLQSSGTAGDGSYCAHWDEATLGDELMTPVIGTGANPLTAITIAAFEDCGYEVSYATAEDIALISPVAAGAKQS---PVNRALRQRRRALTAPPRVFRNA 371
BLAST of jgi.p|Trimin1|347555 vs. uniprot
Match: A0A836CL50_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CL50_9STRA) HSP 1 Score: 258 bits (659), Expect = 4.570e-81 Identity = 138/276 (50.00%), Postives = 174/276 (63.04%), Query Frame = 1
Query: 229 YNIELVKIGDSDAKYDAFFAKAKQRWEQIITGDNVMDIPADKAPEDGWFSNFFEELEPY-----IAAVDDITIAYRISPIDGYGLVLGETSIIRFRTEQYGSFPISAAMTFDTEDVDGMIDDGVFESTILHEMGHALGFSANMWALYASKCGASCAAFDEGAPGGCAASRTYARLGLPGQLRMHAAGGSGDGQYCGHWDELQLGDELMTPVVGSG-MQPLTAISISAFEDMGYLVSYETAAPIELITTVPAEWSQSATLPFTRSLLSRRKRSTFVP 1038
++I+LVK GDSD YD F A+ RW+ +I GD V DI D F + F+ ++P + +DDI I Y+ + +DG G VLG T II+ RT+ G+FP+SAAMTFD DV M DG FE+ +LHEMGHALGFSA+MWA + SKCG +C FD G P GC AS Y LGLPGQL + +G DG YC HWDE LGDELMTP + +G PLTAI+I+AFEDMGY V+Y+ A ELI+ PA W + +R L RR+ P
Sbjct: 24 FSIQLVKFGDSDPAYDKFMEAARDRWQNVIVGD-VYDIRG--VSSDQLFLDVFKGIKPTPEIPGVVDIDDIVIGYQFAKMDGRGEVLGGTFIIQSRTDDIGAFPVSAAMTFDIADVKAMAKDGSFETVVLHEMGHALGFSADMWASFESKCGKTCKVFDAGTPHGCKASDKYKALGLPGQLALDHSGKPKDGSYCAHWDEATLGDELMTPYMNTGGANPLTAITIAAFEDMGYTVNYDAADSAELISPAPANWREHTV---SRMLQRRRQAPQHAP 293
BLAST of jgi.p|Trimin1|347555 vs. uniprot
Match: A0A835YMD2_9STRA (Phosphatase 2C-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YMD2_9STRA) HSP 1 Score: 231 bits (590), Expect = 1.270e-66 Identity = 133/275 (48.36%), Postives = 165/275 (60.00%), Query Frame = 1
Query: 223 GKYNIELVKIGDSDAKYDAFFAKAKQRWEQIITGD--NVMDIPADKAPEDGWFSNFFEELEPYIAAVDDITIAYRISPIDGYGL-----VLGETSIIRFRTEQYGSFPISAAMTFDTEDVDGMIDDGVFESTILHEMGHALGFSANMWALYASKCGASCAAFDEGAPGGCAASRTYARLGLPGQLRMHAAGGSGDGQYCGHWDELQLGDELMTPVVGSGMQPLTAISISAFEDMGYLVSYETAAPIELITTVPAEWSQSATLPFTRSLLSRRKRS 1026
G Y IELV +G +AKYD + A+AKQRWEQ+I GD +V I D+A G + + VDDI I Y + IDG G LG T++ +FR+ G P+SA M FD+ DVD I +G F + LHEMGHALGF + + +ASKCG SC +D+G PGGCAAS + LGL GQL + G GDG YC HW E QLGDELMTP + PLTAI+I AFEDM Y VSY++A PI+ IT A+ S T R L RR+ S
Sbjct: 397 GNYQIELVNLGKPNAKYDKYMARAKQRWEQVIIGDVPDVNGITVDQAL--GGAFRLPPNVGNQLVDVDDIVILYEFAQIDGGGTPAAGNTLGSTTVTQFRSAAQGGAPLSAYMVFDSHDVDTFIREGTFAAVALHEMGHALGFGS--FNQFASKCGTSCKVYDKGVPGGCAASDKFTELGLAGQLLVQYIGKEGDGSYCSHWFEGQLGDELMTPYASQFLNPLTAITIGAFEDMSYQVSYDSADPIDKITPTTADIKASGT---NRLLQQRREAS 664
BLAST of jgi.p|Trimin1|347555 vs. uniprot
Match: A0A835Z0U7_9STRA (Rhomboid domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0U7_9STRA) HSP 1 Score: 223 bits (567), Expect = 5.540e-63 Identity = 132/312 (42.31%), Postives = 170/312 (54.49%), Query Frame = 1
Query: 223 GKYNIELVKIGDSDAKYDAFFAKAKQRWEQIITGDNVMDIPADKAPEDGWFSNFF-----EELEPYIAAVDDITIAYRISPIDGYGLVLGETSIIRFRTEQYGSFPISAAMTFDTEDVDGMIDDGVFE-------------STILHE------------------MGHALGFSANMWALYASKCGASCAAFDEGAPGGCAASRTYARLGLPGQLRMHAAGGSGDGQYCGHWDELQLGDELMTPVVGSG--MQPLTAISISAFEDMGYLVSYETAAPIELITTVPAEWSQSATLPFTRSLLSRRKRST-FVPR 1041
G +NI+L+K GD DAKYD F +A RW Q+I GD V D+P + A + F +FF + P VDDI I Y+I+PIDG V+G T+ + R +YGSFP SA MTFD+ D D I DG + + ILHE MGHALGF+ ++W LY S+CG SC F GAP GC AS+ + LG G L M+ G DG +C HWDE LG+ELMTP + PLT I+I+A+ED+GY VSY +A PI + A W + P R L +RR S + PR
Sbjct: 419 GDFNIQLLKFGDGDAKYDVFMERAAARWMQVIVGD-VQDMPGNSAAD--LFQDFFGANAPAQPLPDSIDVDDIIIGYQIAPIDGPLNVVGSTAALAVRPPEYGSFPYSAGMTFDSADADAAIADGTSDXXXXXXXXXXXXXAVILHEXXXXXXXXXXXXXXXXXXMGHALGFAESLWPLYPSQCGTSCTYFATGAPNGCLASQKFTELGFDGPLPMYFQGSPNDGSFCSHWDETVLGNELMTPGIAEAEVTSPLTEITIAAYEDIGYQVSYASADPISQVVPAQARWKDT---PLNRMLAARRVASARYKPR 724
BLAST of jgi.p|Trimin1|347555 vs. uniprot
Match: A0A835YMK8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YMK8_9STRA) HSP 1 Score: 204 bits (518), Expect = 1.330e-58 Identity = 124/284 (43.66%), Postives = 161/284 (56.69%), Query Frame = 1
Query: 226 KYNIELVKIGDSDAKYDAFFAKAKQRWEQIITGDNVMDIPA-DKAPEDGWFSNFFEELEPYIAAVDDITIAYRISPIDGYGL----VLGETSIIRFRTEQYGSFPISAAMTFDTEDVDGMIDDGVFESTILHEMGHALGFSANMWALYASKCGASCAAFDEGAPG-GCAASRTYARLGLPGQLRMHAAGGSGDGQYCGHWDELQLGDELMTPVVG-SGMQPLTAISISAFEDMGYLVS----------YETAAPIELITTVPAEWSQSATLPFTRSLLSRRKRS 1026
++NI LV +G+ + KYD F AK RWE +I GD V D+P A G + + + P + VDDI IAY+ +PIDG+G +LG T I ++R GSFPISA MTFDT +VD ID G F+ +LHEM HALGF + S CG SC + A GC AS YA LG L + G GDG YC HWDE QLGDELMTP + SG PLT ++I++FED+GY+VS Y+ A P++ I+ + W + R L RR+ S
Sbjct: 119 RFNIVLVNVGEPNPKYDQFMEGAKLRWEAVIVGD-VPDLPGFPTADLFGGYLQYEGDGVPDMTDVDDIIIAYQFAPIDGFGDSSGDMLGTTMITKYRDASQGSFPISAQMTFDTANVDADIDAGAFDVVVLHEMAHALGFGDWATGKFTSPCGTSCLDYASNAGADGCIASTKYAELGYMDPLLVEFGGAPGDGSYCCHWDEGQLGDELMTPGINYSGYNPLTMLTIASFEDLGYVVSSQSLCGAAVSYDAADPMDAISPLGVGWRHTRA---NRHLRQRREAS 398
BLAST of jgi.p|Trimin1|347555 vs. uniprot
Match: A0A836C8X7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8X7_9STRA) HSP 1 Score: 186 bits (473), Expect = 1.160e-52 Identity = 103/250 (41.20%), Postives = 145/250 (58.00%), Query Frame = 1
Query: 229 YNIELVKIGDSDAKYDAFFAKAKQRWEQIITGDNVMDIPADKAPEDGWFSNFFEELEPYIAAVDDITIAYRISPIDGYGLVLGETSIIRFRTEQYG------SFPISAAMTFDTEDVDGMIDDGVFESTILHEMGHALGFSANMWALYASKCGASCAAFDEGAPGGCAA---------SRTYARLGLPGQLRMHAAGGS-GDGQYCGHWDELQLGDELMTPVVGSGMQPLTAISISAFEDMGYLVSYETA 930
++I L+ IG + AKY +F KAK+RWE+I+ GD ++ A +AP+ GWF +F + + AVDDI I Y+I IDG V+G + II+ R + PISA M FD+ DVD +I G F++ +LHEMGHALG W +KCG +C A+ EGA C A SR ++ + G L++ G S DG C HW E QLGDE+MT + S P++ +S+ A ED+GY V+Y+ A
Sbjct: 31 FDITLLPIGKTPAKYHKYFEKAKKRWEEIVVGD-MIGYTAKEAPDSGWFGGYFGKGSDFHGAVDDIVIGYKIRAIDGKNKVVGNSEIIKERAGRAAHKARQQQTPISAVMEFDSADVDDLIKTGYFQTVVLHEMGHALGIGY-AWPTPRAKCGGTCTAYQEGANWDCVAELKFRHLVTSRPDLKIDITGGLQLENTGASKADGTACEHWSETQLGDEIMTAYISSTDNPISIVSVGALEDLGYKVNYKAA 278
BLAST of jgi.p|Trimin1|347555 vs. uniprot
Match: A0A836CB38_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CB38_9STRA) HSP 1 Score: 114 bits (284), Expect = 8.880e-25 Identity = 84/251 (33.47%), Postives = 115/251 (45.82%), Query Frame = 1
Query: 229 YNIELVKIGDSDAKYDAFFAKAKQRWEQIITGDNVMDIPADKAPEDGWFSNFFEELEPYIAAVDDITIAYRISPIDGYGLVLGETSIIRFRTEQYG------SFPISAAMTFDTEDVDGMIDDGVFESTILHEMGHALGFSANMWALYASKCG-----------ASCAAFDEGAPGGCAASRTYARLGLPGQLRMHAAGGSGDGQYCGHWDELQLGDELMTPVVGSGMQPLTAISISAFEDMGYLVSYETA 930
+NI LV + +D KY +F +AK+RWE IIT D V AP GWF + EP VDD+ IAY + IDG G VLG + R + + P+S M FD D ++ GVF+S +LHEMGH LG + +W S CG +C+ + A G CAA +++L L G G G D + PL+ I+I+A +D+GY V Y A
Sbjct: 137 FNIVLVPVPGTDPKYTKYFTQAKERWESIITHDLV---GYGNAPPGGWFQDGPAYTEP----VDDLVIAYSVEKIDGEGNVLGTAGPLYERNDPVSRKRGEANLPLSGTMQFDIADAARLVKAGVFQSVVLHEMGHVLGIGS-LWPTRKSNCGFYTRGKKKGQPPTCSTYTAKADGTCAAQVEFSKLDL----------GRGKRLKMGTLDSYKR------------KPPLSKITIAALKDLGYKVDYSQA 357
BLAST of jgi.p|Trimin1|347555 vs. uniprot
Match: A0A1Z5K5Q5_FISSO (Uncharacterized protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K5Q5_FISSO) HSP 1 Score: 107 bits (267), Expect = 1.850e-22 Identity = 71/231 (30.74%), Postives = 105/231 (45.45%), Query Frame = 1
Query: 262 DAKYDAFFAKAKQRWEQIITGDNVMDIPADKAPEDGWFSNFFEELEPYIAAVDDITIAYRISPIDGYGLVLGETSIIRFRTEQYGSFPISAAMTFDTEDVDGMIDDGVFESTILHEMGHALGFSANMWALYASKCGASCAAFDEGAPGGC------AASRTYARLGLPGQLRMHAAGGSGDGQYCGHWDELQLGDELMTPVVGSGMQPLTAISISAFEDMGYLVSYETAAP 936
D++ F A W Q+ITGD +P+ + P + F +DDI I + PIDG G VLG+ R + S P+ M FD DVD M+ G+F+ ILHE+GH G + +W + + C AAS + L + G G C H+DEL L +ELMT V + + ++ ++++ ED+GY VSY+ A P
Sbjct: 101 DSQLRTVFRNAATEWNQVITGD----LPSIQLPATAKQQSRFCTARSIPRVIDDILICVNVQPIDGPGGVLGQAGAEFIRRDS--SIPLMGGMVFDEADVDFMVQQGIFDEVILHEIGHVYGINGAIWKIKG---------LTDSTQRPCNYKLDSAASTEWQILSGCVGTSIPIENDGGPGTSCSHFDELSLTNELMTGFVRNAVPTMSRLTVATLEDIGYEVSYDAAKP 316
BLAST of jgi.p|Trimin1|347555 vs. uniprot
Match: A0A1Z5JM06_FISSO (Uncharacterized protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JM06_FISSO) HSP 1 Score: 105 bits (262), Expect = 9.350e-22 Identity = 71/242 (29.34%), Postives = 109/242 (45.04%), Query Frame = 1
Query: 229 YNIELVKIGDSDAKYDAFFAKAKQRWEQIITGDNVMDIPADKAPEDGWFSNFFEELEPYIAAVDDITIAYRISPIDGYGLVLGETSIIRFRTEQYGSFPISAAMTFDTEDVDGMIDDGVFESTILHEMGHALGFSANMWALYASKCGASCAAFDEGAPGGC------AASRTYARLGLPGQLRMHAAGGSGDGQYCGHWDELQLGDELMTPVVGSGMQPLTAISISAFEDMGYLVSYETAAP 936
++ L+ +++ A F A W QIITGD +P+ + P + F +DDI I + IDG G VLG+ R + S P+ M FD DVD M+ G+F+ ILHE+GH G + +W + + C AAS + + + G G C H+DEL L +ELMT V + + L+ ++++ ED+GY V+Y+ A P
Sbjct: 92 FDTTLILRNVRNSQLQAVFRNAATEWNQIITGD----LPSIQLPSTAKQQSRFCTARSIPQVIDDILICVNVQAIDGPGRVLGQAGAEFIRRDS--SIPLMGGMVFDEADVDFMVQQGIFDEVILHEIGHVYGINGAIWKIKG---------LTDSTQRPCNYKLDSAASTEWQLMSGCVGTSIPIENDGGPGTSCSHFDELSLTNELMTGFVRNAVPLLSRLTVATLEDIGYKVNYDAAKP 318 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|347555 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_5793 ID=mRNA_5793|Name=jgi.p|Trimin1|347555|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1059bp|location=Sequence derived from alignment at Contig_13:460164..467658+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGGGCGTGCGGGCGGGACTGGAGCCCTTGGCGTCTGTTTTGGGAGCTGCback to top protein sequence of jgi.p|Trimin1|347555 >Trimin1|347555|estExt_Genemark1.C_Ctg_130046 ID=Trimin1|347555|estExt_Genemark1.C_Ctg_130046|Name=jgi.p|Trimin1|347555|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=353bp MGVRAGLEPLASVLGAASGYRRLAVRLSGGLPVENHDLEAEELAEHAGGQback to top mRNA from alignment at Contig_13:460164..467658+ Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_5793 ID=mRNA_5793|Name=jgi.p|Trimin1|347555|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=7495bp|location=Sequence derived from alignment at Contig_13:460164..467658+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_13:460164..467658+ >mRNA_5793 ID=mRNA_5793|Name=jgi.p|Trimin1|347555|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1059bp|location=Sequence derived from alignment at Contig_13:460164..467658+ (Tribonema minus UTEX_B_3156 )back to top |