|
Homology
BLAST of jgi.p|Trimin1|15815 vs. uniprot
Match: A0A835ZC37_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZC37_9STRA) HSP 1 Score: 422 bits (1085), Expect = 1.900e-145 Identity = 203/203 (100.00%), Postives = 203/203 (100.00%), Query Frame = 2
Query: 68 MASLILSSPAAPNVRDIAEGVVANMKAQMPALYFQVLMSGNTSDPAWDDALANYNNQMVLRLTPTPDCVLATDAASSYRMRKALWGVQPWKLTGNAAAVDLTPDLPRILVPVYAYLGQHDEYPQATLGELSGGTTHIPWIHTEVVPDAGHLTHIDNFAYVYSGLNKWLDDTDSQPYFQMLGGFADGDGGGARPCREPPAALQA 676
MASLILSSPAAPNVRDIAEGVVANMKAQMPALYFQVLMSGNTSDPAWDDALANYNNQMVLRLTPTPDCVLATDAASSYRMRKALWGVQPWKLTGNAAAVDLTPDLPRILVPVYAYLGQHDEYPQATLGELSGGTTHIPWIHTEVVPDAGHLTHIDNFAYVYSGLNKWLDDTDSQPYFQMLGGFADGDGGGARPCREPPAALQA
Sbjct: 1 MASLILSSPAAPNVRDIAEGVVANMKAQMPALYFQVLMSGNTSDPAWDDALANYNNQMVLRLTPTPDCVLATDAASSYRMRKALWGVQPWKLTGNAAAVDLTPDLPRILVPVYAYLGQHDEYPQATLGELSGGTTHIPWIHTEVVPDAGHLTHIDNFAYVYSGLNKWLDDTDSQPYFQMLGGFADGDGGGARPCREPPAALQA 203
BLAST of jgi.p|Trimin1|15815 vs. uniprot
Match: A0A836CFD6_9STRA (Alpha/Beta hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFD6_9STRA) HSP 1 Score: 209 bits (533), Expect = 7.910e-63 Identity = 104/130 (80.00%), Postives = 112/130 (86.15%), Query Frame = 2
Query: 2 QGFGGLIALSYATTYPAFTQEKMASLILSSPAAPNVRDIAEGVVANMKAQMPALYFQVLMSGNTSDPAWDDALANYNNQMVLRLTPTPDCVLATDAASSYRMRKALWGVQPWKLTGNAAAVDLTPDLPRI 391
QGFGGLIALSYATTYP FTQEKMASLIL+SPAAPN+ + +GVVANMKAQMPA YFQVLMSGNT+DPAW ALANYNN MVLRLTPTPDCVL+T A SS MR ALWG QPW+LTGNAA DL DLPR+
Sbjct: 92 QGFGGLIALSYATTYPDFTQEKMASLILASPAAPNMHSVVDGVVANMKAQMPAPYFQVLMSGNTTDPAWGAALANYNNLMVLRLTPTPDCVLSTVAGSSDAMRTALWGHQPWQLTGNAARTDLKRDLPRV 221
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
ProteomeId | Trimin1|15815|CE15814_36 |
Description | Alpha/beta hydrolase family |
COG category | I |
Max annot lvl | 201174|Actinobacteria |
EggNOG OGs | COG2267@1|root,COG2267@2|Bacteria,2I5SM@201174|Actinobacteria,4E3UI@85010|Pseudonocardiales |
Evalue | 3.52e-09 |
Seed ortholog | 909613.UO65_1562 |
Hectar predicted targeting category | other localisation |
TranscriptId | 16137 |
Track | FilteredModels1 |
ProteinId | 15815 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_5784 ID=mRNA_5784|Name=jgi.p|Trimin1|15815|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1105bp|location=Sequence derived from alignment at Contig_13:351855..357395+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.
GCAGGGGTTTGGGGGGCTCATAGCGCTGTCGTACGCGACAACGTACCCCG CCTTCACGCAGGAGAAGATGGCCAGCCTGATCCTGTCGAGCCCCGCGGCG CCAAACGTCCGCGACATCGCGGAGGGCGTGGTGGCCAACATGAAGGCCCA GATGCCAGCGCTGTATTTCCAAGTCCTGATGAGCGGGAATACATCGGACC CGGCATGGGATGACGCGCTGGCCAACTACAACAACCAGATGGTGCTGCGC CTCACGCCGACGCCCGACTGCGTCCTCGCGACGGACGCCGCCAGCAGCTA CCGCATGCGCAAGGCGCTGTGGGGCGTGCAGCCGTGGAAGCTCACGGGCA ACGCCGCCGCCGTCGACCTCACGCCGGACCTGCCGCGGATCCTGGTGCCA GTGTACGCGTACCTCGGCCAGCACGACGAGTACCCTCAGGCGACGCTGGG GGAGCTCAGCGGCGGCACGACGCACATCCCCTGGATCCACACGGAGGTGG TGCCCGACGCTGGCCACCTGACGCACATTGACAACTTTGCCTACGTCTAC AGCGGCTTGAACAAGTGGCTTGACGACACCGACAGCCAGCCGTACTTCCA GATGCTCGGCGGATTTGCGGACGGCGACGGCGGCGGCGCGCGCCCCTGCC GAGAACCGCCGGCCGCGCTGCAAGCGCGGCAGCAGCACGCAGCGGCAGCG GCGGCGGCAGCGGCAGCAGCAGCAGCGGACGCCGCTGCGCCGTCGCAGCT GCACACGGCTGCCGCCACCCACTTGGCCGCCCGAGATGGCGCTACGGCAT CGACGCATCACGCGCTGCGGCATGGCGGCGCCGCGGCACATCATAGCCTG GGAGCAATAGCGCTGTTGGCCGTGGTGGCAGCGGCGGCGGCGGTGGCGGG GTGGGTCGCGAGCGCGCGGCGGCGCCGGCGACAGTACGCCGCGATCGACA CCTGACCGCAGGCCAGCCGCCGCGCAGACGGCCGATGTCGCGATCGATGT GCCGTGCGATCGGCAGGCATCCCTGACGCAGTTCATGTGCTGGATGGGTG CCACGTTTTTTCCGCTGGGCACAAACGGGCCTCACTGCGTGTGGCGCCGT GCGCA back to topprotein sequence of jgi.p|Trimin1|15815 >Trimin1|15815|CE15814_36 ID=Trimin1|15815|CE15814_36|Name=jgi.p|Trimin1|15815|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=296bp
MASLILSSPAAPNVRDIAEGVVANMKAQMPALYFQVLMSGNTSDPAWDDA LANYNNQMVLRLTPTPDCVLATDAASSYRMRKALWGVQPWKLTGNAAAVD LTPDLPRILVPVYAYLGQHDEYPQATLGELSGGTTHIPWIHTEVVPDAGH LTHIDNFAYVYSGLNKWLDDTDSQPYFQMLGGFADGDGGGARPCREPPAA LQARQQHAAAAAAAAAAAAADAAAPSQLHTAAATHLAARDGATASTHHAL RHGGAAAHHSLGAIALLAVVAAAAAVAGWVASARRRRRQYAAIDT* back to topmRNA from alignment at Contig_13:351855..357395+ Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_5784 ID=mRNA_5784|Name=jgi.p|Trimin1|15815|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=5541bp|location=Sequence derived from alignment at Contig_13:351855..357395+ (Tribonema minus UTEX_B_3156 ) GCAGGGGTTTGGGGGGCTCATAGCGCTGTCGTACGCGACAACGTACCCCG
CCTTCACGCAGGAGAAGGTGAGCGCGCTCGCATTCAGGCCCATGTATGTG
TGCCCGGACATATCGAGCGCGTTTTATCTTACGTCTAGGGGCGTCTTCTC
CTGCGACTGGTGCACACGGTGCAACGGCGCCTGCGCTGGACGTTGGCGCG
CACAACACGCAGTTCTGTAGCCTCTCTCCATCTCTTCCATGCACAGACAC
GGCCGAGTGGCAAGGCGACGTTTCTGAGCCGCGGCGCACGATGCGACAGA
GTAGGCGCTGGGGCGTGCAGATGGGGTCGCTGCACATCATTTCACTCGCA
TGCGGCGGCGCGGTTCGTGCGCCACACGCTGCACCTATATGCCTGACCTG
CCGTTGGCGGCGCAGCGAGTTCATTCATGGCTACCGAGGCCACGCGGCGC
ATGTGCGCTGCCCCCCGCGTGCGCCGCTGCGATCGCTCCGCGCTAGAGGG
AGGTGTTGGATGTAGAGATTCAAGTGCTTCCAGGACGAGCTCACTGCGCA
GAATATGCCATGATACAATAATTTGCCAGATACGTCGTTCTCGCGCATTT
GACCATGCGTCGCCATGCAACCCAGCTATTGCTCAACTCGAGCATGTGCG
TGCTCGGCGCGCCCGCTGCGTCTGTGGGCTCATGCTTTCTGGTTCTCCGT
GCATTCCTGCACTCTGAACGCACTTCTAGTCGAAGTAGCATTTCCACCAG
CCGCTAACGCACCTTTACGCATGGAGCGGTGAGGTGACGCTGACTCTGCC
TACATGCACACCCCCTCCGTCCCGCAGATGGCCAGCCTGATCCTGTCGAG
CCCCGCGGCGCCAAACGTCCGCGACATCGCGGAGGGCGTGGTGGCCAACA
TGAAGGTGAGCGCTGCTGCGGCTTCTGCGTGATGTTTGATGATGCTCAAC
CAGATGGTGAGCGCTGCATTGTGGCTCAGGTCCAATGTGATCAGTGCAGG
TCTTTAAGTAGTGGTGGCCAACATGAGGGTGCGCGCAGCCGCGGCGTCCG
CGCAAGATGATGTCGATGATGCTCAACGCATCTAGCAACCGCCCCGTGCG
GCTCACTGGTGACGCGCTGCACGCGGGCGTGGCTGCGCGACAGCAGGGCG
TGCGCGCGCGGGATGTGCAGCTCCGCCCCACCTCCATGCATGCGCTGAGG
CTGAAGCTGCAAGCCAGAACGGCGCAGCAGTTCGCCCTCCCCGTCTCATG
ATTTGCCTGCAAGCGTTGTGGGCGGCGCATCAGATCTCGCCAGCTCCTGT
CCCACCTGCTTATTTATAAGTATGTATTCTCTCTCCTGCTGCGTTGGCAC
GTTTGGCAAGTCAGTGGCGGGTCGCTGCTATCCACCGTCGTCGTCGTCTT
ATGCCACTGCCAGCTCATTTCATCTGTCGTGTGCGCTTTGGTCTCTGTTG
TGTGATCCCACTGCAGGCCCAGATGCCAGCGCTGTATTTCCAAGTCCTGA
TGAGCGGGAATACATCGGACCCGGCATGGGATGTGAGTTTTACATTCTGT
TACACATGCAGTTCAACCTACTGTTCAAGCTGTTCTGCCAGCGTCTGCGC
AGTGTCTGTTAACTACAACTTTGAGGCGATCCTATCTGGAGGCACCTTCG
ACCGAAGCCGCCGCGCCAGGCGTTCACACCAGTTGAGCGCTGCCATGCAT
GCATTTGGTGTCGTAGACTGTGTGCGCTGCGACGGCGACGTGCAATAGCT
GGAGAGCAGTCTCGCCGCTGCCGCTACTGTGCCATGTGCTCCATGCCGCT
AATATCAGATTGTGTGTGGGCTTGCAGGCCGTGCGCACAGGTCGCCACGT
GCACAATTGCGTAACGCGATACGCGCAAGGCTGTCTTAAGCATCCATGAG
CGCCTGACGTGCTGACATCGCGTATGAGCGCTTATCTTTGGGTCTGGCTG
GGGCTGGGGTCAGGTTGGCGTAGGCTTGTACCGCTGGCCACCAAGAATTA
CAGATGGTGCTGCACCGGCGCGTGCATCGTTCGCTGAGCTCTTTCCTGCG
CAGCGGCATCGCGGCGCTGTGTGACCGCCATTCACCGGCTCGGCGGAGGC
AACGCAAGCATCGGTCAGCTCTGATGGTCGCGATTGTGCTGCATGCGCCG
CCGCCGCAATTCCCGCTGCGCGCGGTGCAGAACTGCCTTGTATAAAGTCG
GGCTCACGCCTGCGCGGCGCCATGCGCTCTGTGCTTCACCTCAACGCGTT
CGACGCCATTGAGCAGCGCGCAGAAGCGGGCACGCGCGCCAGCCAGCCTC
GACCGCTGCCGATGGCGCTGCACATGCCGCCGCCGCCGCCACCTGCCTGC
TGCTGCCTCTCGATGTCCACAGCTGCTGCGCGCGGCATCGCGTTCGCGCC
TGCGCATCACCGCGTGCGCTATGCTGTGTCTGACGCGCGGACCCCCCCCC
CCCCCCCCCCCTCACGGCGACCCCGTCCCCCTCCCTGCGCAGGACGCGCT
GGCCAACTACAACAACCAGATGGTGCTGCGCCTCACGCCGACGCCCGACT
GCGTCCTCGCGACGGACGCCGCCAGCAGCTACCGCATGCGCAAGGCGCTG
TGGGGCGTGCAGCCGTGGAAGCTCACGGGCAACGCCGCCGCCGTCGACCT
CACGCCGGACCTGCCGCGGGTGAGCGCGCTCGACGCCGTTTGCTCTCGGC
GCAGTCGTGGTTACGTCATCATAGCAGTGCGCCCACGATACTCGACGATA
GCTCCTAATGGAACCCTGCCGCGCGTGAGCGCCGCGACGCCGTTCTGCCT
CGGCGCAGTTCAGTTGCAGCCTTACAGGCGCAGCAGTGTGTCAGCGATGA
CCTCGTAGCGAAACAGCGTAGGCGTGGCTGAGGAAGGACAGCGGCAGCAG
CTGTGTTGTGTCTGCGCCACGCACAAAACGAGGCGCCATGCTCTGTCGCG
CGCAGGCGCTGGCCTGTAGCTGCGCAGCAAAGCAGCGCTGGTGCTATGGA
ATGCACAGCACAGCAGCATTGCCGCACCGCTTTGCCTGCCACGCCATGAT
TTGTAAAGTGGAGGAGCTTCCAACAACGTGTTGAAGACATGCTCAACTAC
TTGGTACCGCAGCCATCAGCTGCTGCCACTCTGTGTGTGCGGTGCGCTGC
AGGTGAAGTGGCGCACTGGCCCTGCGCCAATGTACCCCGGCCAGCAGCAA
ACACCACTGCAGTGTGTCATTGTGCGCAGCGATGGTGAACGCAGGGGCTC
GCCCTGTGTAATCTTCGCTCCTCACCGCTCTTGTCTTGGAATTTGCAGCC
CTGCCGCTGCGTGCCGCGCAGCATCTCACTCTCGCAGTGTCTCCCGACAC
CCCCCCCCCCTGCAGATCCTGGTGCCAGTGTACGCGTACCTCGGCCAGCA
CGACGAGTACCCTCAGGCGACGCTGGGGGAGCTCAGGTATGCCAGCTGCG
TCCCAGTGCTCAGCAGGCATTTTTTACATCAACTCTCTCTCGCTCAGGCC
GCAGACGCAGATAAAGTTCCAGATGACCAGCGTCGTTGTCAAAAAGGGGG
CTGCCAGAGTCTATACCTTGCCACACAGTGTCTCAGTGCCCAGTGATGAT
GATCGCCTGTAGGTACATTGGGTAGGTATGTTGTGGAGCGATGCGCGGTG
CGCTGCCGCAACGCTGCCACGCGACGCGACGCACGGGCGGCACCCCTGCG
ATGCATCACGTTGTGATTGAGCAGGCGCGCTTGCTCCCGCGCTTAGTGGG
CGTCAAAAGGCCTGATTCGAGCAGCAAGTCCCGCCAAGTACCACTATGGA
CAGAAGCAAATTGCTGCTTGTGTAGCACAATCTGCACACGGCACGCCACT
GCACAGCCGGTGATGATGCCAGCATTAACACATGGAGTGTACGGTTGCAC
GCACTCCCCCGCAGTTTTGTCCCTGGGCGAGCACTGCTGCTCCCAAAAAG
TGCCATTGATTGCAAAACCAGACTCCATGAGGCAAAGAGTGCATCTGAAC
TTGATGATCTGTTGCTTGGTGCCCTTACTTTCGGTCTGTTCTCAGTCCAC
AGGGCTCACTGGCTAAGTTTCCATTGATTGTACGACCCTGATTGCATTAT
AGTCGTGATGGCATCGCTGCAAGGTGCTGCGGCAACTCCAGCCACGAGCT
GGGTGTTGCCTTCGTTTGTAGCACCGCTCATCCGCAGCGTGATCTCACTG
ATGCAGGCGGAGGAAACAGACGTATTCCCCCAGCAGCAGCGCCAGCACAA
GCACAGTATCTGACGCTGACGTACCTCTGTCGCGCCACAGCACGGTTGAG
CAGCTTCAGTGCCGCACGGTTGAGCAGCTTCAGTGCCGCATGCTCTCAGG
CACTGGCACCGCTCACCAAGTGCTTGGAGCCGTGCAAACCATGCTGGTGT
GAAGAAGTGCGATGTGCAGGCCACAACCCTGCTGGCATCCCTTGTTTGTA
CGCGCTGCTGCTGCTGCCGCTGCGCGCTCTGACCGCGGCCCTGCTCTGCG
CGCGCTTTGCAACGCGGTGCTGCCCTGCAGCGGCGGCACGACGCACATCC
CCTGGATCCACACGGAGGTGGTGCCCGACGCTGGCCACCTGACGCACATT
GACAACTTTGCCTACGTCTACAGGTATGTGTTCGTGCGGCTGAGATGATC
GTATGTTTGTAAACAGCTGACGCCATTCGCGCACAAGATGCTGAAGAAAG
CCGCATGCGCGTGCATGTACATGTGATCTCAGGTGTCAGCAACACTCTCT
TTGCTGCTCTGGCGCAAGTACAGACCGTTTTCGAATGGAGTCACAGCGGA
TGAGAACATCTAGTCAGCAGATGCGTGCTTCTGCTCGCCTCTATCGTCCG
AACACTCAAGTGCTGTAATTCAGGACGCCCAGCACACACAGTGCACCACA
CTCCTCTTTCAAGAAAAAGCATCAGGATCCCGCAGTGCATTGCACGCTCT
CACCGACACACCGCCCCTCACGCGCCTGTGCGCCGCAGCGGCTTGAACAA
GTGGCTTGACGACACCGACAGCCAGCCGTACTTCCAGATGCTCGGCGGAT
TTGCGGACGGCGACGGCGGCGGCGCGCGCCCCTGCCGAGAACCGCCGGCC
GCGCTGCAAGCGCGGCAGCAGCACGCAGCGGCAGCGGCGGCGGCAGCGGC
AGCAGCAGCAGCGGACGCCGCTGCGCCGTCGCAGCTGCACACGGCTGCCG
CCACCCACTTGGCCGCCCGAGATGGCGCTACGGCATCGACGCATCACGCG
CTGCGGCATGGCGGCGCCGCGGCACATCATAGCCTGGGAGCAATAGCGCT
GTTGGCCGTGGTGGCAGCGGCGGCGGCGGTGGCGGGGTGGGTCGCGAGCG
CGCGGCGGCGCCGGCGACAGTACGCCGCGATCGACACCTGACCGCAGGCC
AGCCGCCGCGCAGACGGCCGATGTCGCGATCGATGTGCCGTGCGATCGGC
AGGCATCCCTGACGCAGTTCATGTGCTGGATGGGTGCCACGTTTTTTCCG
CTGGGCACAAACGGGCCTCACTGCGTGTGGCGCCGTGCGCA back to topCoding sequence (CDS) from alignment at Contig_13:351855..357395+ >mRNA_5784 ID=mRNA_5784|Name=jgi.p|Trimin1|15815|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=888bp|location=Sequence derived from alignment at Contig_13:351855..357395+ (Tribonema minus UTEX_B_3156 ) ATGGCCAGCCTGATCCTGTCGAGCCCCGCGGCGCCAAACGTCCGCGACAT CGCGGAGGGCGTGGTGGCCAACATGAAGGCCCAGATGCCAGCGCTGTATT TCCAAGTCCTGATGAGCGGGAATACATCGGACCCGGCATGGGATGACGCG CTGGCCAACTACAACAACCAGATGGTGCTGCGCCTCACGCCGACGCCCGA CTGCGTCCTCGCGACGGACGCCGCCAGCAGCTACCGCATGCGCAAGGCGC TGTGGGGCGTGCAGCCGTGGAAGCTCACGGGCAACGCCGCCGCCGTCGAC CTCACGCCGGACCTGCCGCGGATCCTGGTGCCAGTGTACGCGTACCTCGG CCAGCACGACGAGTACCCTCAGGCGACGCTGGGGGAGCTCAGCGGCGGCA CGACGCACATCCCCTGGATCCACACGGAGGTGGTGCCCGACGCTGGCCAC CTGACGCACATTGACAACTTTGCCTACGTCTACAGCGGCTTGAACAAGTG GCTTGACGACACCGACAGCCAGCCGTACTTCCAGATGCTCGGCGGATTTG CGGACGGCGACGGCGGCGGCGCGCGCCCCTGCCGAGAACCGCCGGCCGCG CTGCAAGCGCGGCAGCAGCACGCAGCGGCAGCGGCGGCGGCAGCGGCAGC AGCAGCAGCGGACGCCGCTGCGCCGTCGCAGCTGCACACGGCTGCCGCCA CCCACTTGGCCGCCCGAGATGGCGCTACGGCATCGACGCATCACGCGCTG CGGCATGGCGGCGCCGCGGCACATCATAGCCTGGGAGCAATAGCGCTGTT GGCCGTGGTGGCAGCGGCGGCGGCGGTGGCGGGGTGGGTCGCGAGCGCGC GGCGGCGCCGGCGACAGTACGCCGCGATCGACACCTGA back to top
|