mRNA_5612 (mRNA) Tribonema minus UTEX_B_3156
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Overview
Homology
BLAST of jgi.p|Trimin1|66551 vs. uniprot
Match: A0A836CE97_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CE97_9STRA) HSP 1 Score: 328 bits (840), Expect = 7.470e-113 Identity = 167/167 (100.00%), Postives = 167/167 (100.00%), Query Frame = 2
Query: 32 MLRFSRAGCQAVRAAKQVCALRASSTAKGMPHDTLWLPMPRLSPSMKTGTIKKWLLSPGDEFGEYEAALTIDTDTLVAEGLKTPESSGSTSMVVELLEAGFMAKLLRKEGETVRVGEPIALLCEEEDSVSALQSDTLDIPHDVQLYEEGNGHKVPQLQAFLDKEQPE 532
MLRFSRAGCQAVRAAKQVCALRASSTAKGMPHDTLWLPMPRLSPSMKTGTIKKWLLSPGDEFGEYEAALTIDTDTLVAEGLKTPESSGSTSMVVELLEAGFMAKLLRKEGETVRVGEPIALLCEEEDSVSALQSDTLDIPHDVQLYEEGNGHKVPQLQAFLDKEQPE
Sbjct: 1 MLRFSRAGCQAVRAAKQVCALRASSTAKGMPHDTLWLPMPRLSPSMKTGTIKKWLLSPGDEFGEYEAALTIDTDTLVAEGLKTPESSGSTSMVVELLEAGFMAKLLRKEGETVRVGEPIALLCEEEDSVSALQSDTLDIPHDVQLYEEGNGHKVPQLQAFLDKEQPE 167
BLAST of jgi.p|Trimin1|66551 vs. uniprot
Match: A0A6H5JR22_9PHAE (Lipoyl-binding domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR22_9PHAE) HSP 1 Score: 101 bits (252), Expect = 1.860e-23 Identity = 58/133 (43.61%), Postives = 78/133 (58.65%), Query Frame = 2
Query: 134 LWLPMPRLSPSMKTGTIKKWLLSPGDEFGEYEAALTIDTDTLVAEGLKTPESSGSTSMVVELLEAGFMAKLLRKEGETVRVGEPIALLCEEEDSVSALQSDTLDIPHDVQLYE-EGNGHKVPQLQAFLDKEQP 529
L+LPMP+LSPSM T+ KWL + GDE EY+A L + TD+L A G P G+ MVVEL E GF+ KL EG+TV VG+ + +CEE ++V AL T V Y G G ++ Q +L+ + P
Sbjct: 59 LYLPMPKLSPSMTRATVTKWLKAEGDEINEYDAILELSTDSLYALG-DAPVEGGTVDMVVELAECGFVGKLFVAEGDTVEVGQAVMAMCEEVENVRALSGVT---SPGVDCYGGAGEGLRIATYQGYLNHKTP 187
BLAST of jgi.p|Trimin1|66551 vs. uniprot
Match: A0A7S3R2U8_DUNTE (Hypothetical protein n=1 Tax=Dunaliella tertiolecta TaxID=3047 RepID=A0A7S3R2U8_DUNTE) HSP 1 Score: 75.5 bits (184), Expect = 2.750e-13 Identity = 39/99 (39.39%), Postives = 61/99 (61.62%), Query Frame = 2
Query: 140 LPMPRLSPSMKTGTIKKWLLSPGDEFGEYEAALTIDTDTLVAEGLKTPESSGSTSMVVELLEAGFMAK-LLRKEGET-VRVGEPIALLCEEEDSVSALQ 430
+P P+LSP M TG + KWL PGD Y+ +DT+ L E + + G+T ++VE E G++AK + +G+ ++VG P+ +LCEEE V++LQ
Sbjct: 74 VPFPQLSPPMHTGRLTKWLKQPGDRVELYDVLFEVDTEELTEELYRVGQFEGTTQLLVESHEEGWLAKHFVEADGKRPLQVGTPVGVLCEEEGQVASLQ 172
BLAST of jgi.p|Trimin1|66551 vs. uniprot
Match: A0A7S4HG71_9EUKA (Hypothetical protein n=1 Tax=Prymnesium polylepis TaxID=72548 RepID=A0A7S4HG71_9EUKA) HSP 1 Score: 71.2 bits (173), Expect = 3.960e-12 Identity = 43/113 (38.05%), Postives = 61/113 (53.98%), Query Frame = 2
Query: 95 RASSTAKGMPHDTLWLPMPRLSPSMKTGTIKKWLLSPGDEFGEYEAALTIDTDTLVAEGLKTPESSGSTSMV---VELLEAGFMAKLLRKEGETVRVGEPIALLCEEEDSVSA 424
R ST + PH + PMPRLSPSM+TGT+++W+ S GDE + T L + PE +G ++ VE E G++AK+L EGE IA++CE + V A
Sbjct: 23 RLLSTKRYPPHRLM--PMPRLSPSMRTGTLQRWIPSVGDEISSMNVMCEVATSELTED----PEDNGEDGVIILEVESHEEGYLAKILLPEGEAAECDIAIAIVCESDTDVPA 129
BLAST of jgi.p|Trimin1|66551 vs. uniprot
Match: A0A6T6UT81_9EUKA (Hypothetical protein n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A6T6UT81_9EUKA) HSP 1 Score: 68.2 bits (165), Expect = 7.690e-11 Identity = 44/120 (36.67%), Postives = 66/120 (55.00%), Query Frame = 2
Query: 101 SSTAKGMPHDTLWLPMPRLSPSMKTGTIKKWLLSPGDEFGEYEAALTIDTDTLVAEGLKTPESSGSTSMVVELLEAGFMAKLLRKEGETVRVGEPIALLCEEEDSVSALQSDTLDIPHDV 460
SS + +P +W+PMP+LSPSM +G I W + G+ + ++ D L+ ++ +S M E E G +A+++ EGE+ GEPIALL E E+ +SAL LD P DV
Sbjct: 29 SSQSSSLPWH-VWIPMPQLSPSMNSGKIVHWKVKEGERVEITDLIARLEVDNLLENPIE--DSDHKHKMEYESHEEGTIARIVAHEGESRSPGEPIALLVEREEDISALAH--LDPPTDV 143
BLAST of jgi.p|Trimin1|66551 vs. uniprot
Match: A0A7C6DW42_9BACT (Acetyltransferase component of pyruvate dehydrogenase complex n=1 Tax=Blastocatellia bacterium TaxID=2052146 RepID=A0A7C6DW42_9BACT) HSP 1 Score: 64.7 bits (156), Expect = 9.720e-9 Identity = 34/94 (36.17%), Postives = 52/94 (55.32%), Query Frame = 2
Query: 146 MPRLSPSMKTGTIKKWLLSPGDEFGEYEAALTIDTDTLVAEGLKTPESSGSTSMVVELLEAGFMAKLLRKEGETVRVGEPIALLCEEEDSVSAL 427
MP+LSP+M+ G I +WL + GD F E +DTD +M + L G + K+++K GET +GEPIA++ E+ + +SAL
Sbjct: 7 MPKLSPTMEEGQISRWLKNEGDSFEANETLAEVDTD--------------KATMEMTALNGGTLLKIIKKAGETAALGEPIAIIGEKGEDISAL 86
BLAST of jgi.p|Trimin1|66551 vs. uniprot
Match: A0A7S3F8M8_9VIRI (Hypothetical protein (Fragment) n=1 Tax=Prasinoderma singulare TaxID=676789 RepID=A0A7S3F8M8_9VIRI) HSP 1 Score: 61.6 bits (148), Expect = 2.330e-8 Identity = 48/135 (35.56%), Postives = 71/135 (52.59%), Query Frame = 2
Query: 29 AMLRFSRAGCQAVRAAKQVCALRASSTAKGMPHDTLWLPMPRLSPSMKTGTIKKWLLSPGDEFGEYEAALTIDTDTLVAEGLKTPESSGSTSMVVELLEAGFMAKLLRKEGET-VRVGEPIALLCEEEDSVSALQ 430
A+LR A A R A + A+R +++ PH L MP LSP+M G + +W GD E E TI+TD ++M E+LE G++A+LL +GE V VG P+A++ EEE ++AL+
Sbjct: 18 AVLRVPAAPSAAARRAGGL-AMRPFASSALPPHQVL--EMPALSPTMDKGNLAEWNKKEGDRIREGEVLATIETD--------------KSTMAWEVLEEGYIARLLVPDGEQEVEVGVPVAVMVEEEADLAALK 135
BLAST of jgi.p|Trimin1|66551 vs. uniprot
Match: G7LJ01_MEDTR (Acetyltransferase component of pyruvate dehydrogenase complex n=5 Tax=50 kb inversion clade TaxID=2231393 RepID=G7LJ01_MEDTR) HSP 1 Score: 62.8 bits (151), Expect = 4.890e-8 Identity = 42/116 (36.21%), Postives = 62/116 (53.45%), Query Frame = 2
Query: 80 QVCALRASSTAKGMP-HDTLWLPMPRLSPSMKTGTIKKWLLSPGDEFGEYEAALTIDTDTLVAEGLKTPESSGSTSMVVELLEAGFMAKLLRKEGET-VRVGEPIALLCEEEDSVS 421
QV + R+ S+A +P H + MP LSP+M G I +WL GD+ E ++TD E +E +E GF+AK++RKEGE ++VGE IA+ EEE ++
Sbjct: 98 QVLSRRSYSSASDLPPHQEIG--MPSLSPTMTEGNIARWLKKEGDKVSPGEVLCEVETDKATVE--------------MECMEEGFLAKIVRKEGEKEIQVGEVIAITVEEEADIA 197
BLAST of jgi.p|Trimin1|66551 vs. uniprot
Match: A0A7S3VCQ0_9STRA (Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3VCQ0_9STRA) HSP 1 Score: 62.8 bits (151), Expect = 5.370e-8 Identity = 35/96 (36.46%), Postives = 52/96 (54.17%), Query Frame = 2
Query: 146 MPRLSPSMKTGTIKKWLLSPGDEFGEYEAALTIDTDTLVAEGLKTPESSGSTSMVVELLEAGFMAKLLRKEGETVRVGEPIALLCEEEDSVSALQS 433
MP LS +M G I +WL S GDE EA + +++D M VE E GF+AK++++EGETV VG + ++ EED ++ + S
Sbjct: 191 MPALSSTMVEGKIVQWLKSEGDEILAGEAIMVVESD--------------KADMDVEAFEDGFLAKIIKEEGETVDVGAAVGIIVPEEDDIAKISS 272
BLAST of jgi.p|Trimin1|66551 vs. uniprot
Match: A0A1X0NXH9_9TRYP (Putative dihydrolipoamide acetyltransferase n=1 Tax=Trypanosoma theileri TaxID=67003 RepID=A0A1X0NXH9_9TRYP) HSP 1 Score: 62.4 bits (150), Expect = 5.760e-8 Identity = 39/100 (39.00%), Postives = 52/100 (52.00%), Query Frame = 2
Query: 128 DTLWLPMPRLSPSMKTGTIKKWLLSPGDEFGEYEAALTIDTDTLVAEGLKTPESSGSTSMVVELLEAGFMAKLLRKEGETVRVGEPIALLCEEEDSVSAL 427
D L + MP LSPSM+TGTI +W GD E E T+ TD V + T +AG++AK+L K GETV V + IAL+ + V+ L
Sbjct: 126 DILSIFMPALSPSMETGTIVEWKKKVGDLVKENEVFCTVQTDKAVVDYTNT-------------FDAGYLAKILHKNGETVPVAKTIALMVSNAEDVAKL 212 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|66551 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_5612 ID=mRNA_5612|Name=jgi.p|Trimin1|66551|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=617bp|location=Sequence derived from alignment at Contig_42:143972..144885- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. GAAAAAAACACCAACGCACACACACGACGCTATGCTGAGATTCTCGAGAGback to top protein sequence of jgi.p|Trimin1|66551 >Trimin1|66551|CE66550_43 ID=Trimin1|66551|CE66550_43|Name=jgi.p|Trimin1|66551|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=168bp MLRFSRAGCQAVRAAKQVCALRASSTAKGMPHDTLWLPMPRLSPSMKTGTback to top mRNA from alignment at Contig_42:143972..144885- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_5612 ID=mRNA_5612|Name=jgi.p|Trimin1|66551|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=914bp|location=Sequence derived from alignment at Contig_42:143972..144885- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_42:143972..144885- >mRNA_5612 ID=mRNA_5612|Name=jgi.p|Trimin1|66551|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=504bp|location=Sequence derived from alignment at Contig_42:143972..144885- (Tribonema minus UTEX_B_3156 )back to top |