mRNA_5612 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|66551
Unique NamemRNA_5612
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|66551 vs. uniprot
Match: A0A836CE97_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CE97_9STRA)

HSP 1 Score: 328 bits (840), Expect = 7.470e-113
Identity = 167/167 (100.00%), Postives = 167/167 (100.00%), Query Frame = 2
Query:   32 MLRFSRAGCQAVRAAKQVCALRASSTAKGMPHDTLWLPMPRLSPSMKTGTIKKWLLSPGDEFGEYEAALTIDTDTLVAEGLKTPESSGSTSMVVELLEAGFMAKLLRKEGETVRVGEPIALLCEEEDSVSALQSDTLDIPHDVQLYEEGNGHKVPQLQAFLDKEQPE 532
            MLRFSRAGCQAVRAAKQVCALRASSTAKGMPHDTLWLPMPRLSPSMKTGTIKKWLLSPGDEFGEYEAALTIDTDTLVAEGLKTPESSGSTSMVVELLEAGFMAKLLRKEGETVRVGEPIALLCEEEDSVSALQSDTLDIPHDVQLYEEGNGHKVPQLQAFLDKEQPE
Sbjct:    1 MLRFSRAGCQAVRAAKQVCALRASSTAKGMPHDTLWLPMPRLSPSMKTGTIKKWLLSPGDEFGEYEAALTIDTDTLVAEGLKTPESSGSTSMVVELLEAGFMAKLLRKEGETVRVGEPIALLCEEEDSVSALQSDTLDIPHDVQLYEEGNGHKVPQLQAFLDKEQPE 167          
BLAST of jgi.p|Trimin1|66551 vs. uniprot
Match: A0A6H5JR22_9PHAE (Lipoyl-binding domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR22_9PHAE)

HSP 1 Score: 101 bits (252), Expect = 1.860e-23
Identity = 58/133 (43.61%), Postives = 78/133 (58.65%), Query Frame = 2
Query:  134 LWLPMPRLSPSMKTGTIKKWLLSPGDEFGEYEAALTIDTDTLVAEGLKTPESSGSTSMVVELLEAGFMAKLLRKEGETVRVGEPIALLCEEEDSVSALQSDTLDIPHDVQLYE-EGNGHKVPQLQAFLDKEQP 529
            L+LPMP+LSPSM   T+ KWL + GDE  EY+A L + TD+L A G   P   G+  MVVEL E GF+ KL   EG+TV VG+ +  +CEE ++V AL   T      V  Y   G G ++   Q +L+ + P
Sbjct:   59 LYLPMPKLSPSMTRATVTKWLKAEGDEINEYDAILELSTDSLYALG-DAPVEGGTVDMVVELAECGFVGKLFVAEGDTVEVGQAVMAMCEEVENVRALSGVT---SPGVDCYGGAGEGLRIATYQGYLNHKTP 187          
BLAST of jgi.p|Trimin1|66551 vs. uniprot
Match: A0A7S3R2U8_DUNTE (Hypothetical protein n=1 Tax=Dunaliella tertiolecta TaxID=3047 RepID=A0A7S3R2U8_DUNTE)

HSP 1 Score: 75.5 bits (184), Expect = 2.750e-13
Identity = 39/99 (39.39%), Postives = 61/99 (61.62%), Query Frame = 2
Query:  140 LPMPRLSPSMKTGTIKKWLLSPGDEFGEYEAALTIDTDTLVAEGLKTPESSGSTSMVVELLEAGFMAK-LLRKEGET-VRVGEPIALLCEEEDSVSALQ 430
            +P P+LSP M TG + KWL  PGD    Y+    +DT+ L  E  +  +  G+T ++VE  E G++AK  +  +G+  ++VG P+ +LCEEE  V++LQ
Sbjct:   74 VPFPQLSPPMHTGRLTKWLKQPGDRVELYDVLFEVDTEELTEELYRVGQFEGTTQLLVESHEEGWLAKHFVEADGKRPLQVGTPVGVLCEEEGQVASLQ 172          
BLAST of jgi.p|Trimin1|66551 vs. uniprot
Match: A0A7S4HG71_9EUKA (Hypothetical protein n=1 Tax=Prymnesium polylepis TaxID=72548 RepID=A0A7S4HG71_9EUKA)

HSP 1 Score: 71.2 bits (173), Expect = 3.960e-12
Identity = 43/113 (38.05%), Postives = 61/113 (53.98%), Query Frame = 2
Query:   95 RASSTAKGMPHDTLWLPMPRLSPSMKTGTIKKWLLSPGDEFGEYEAALTIDTDTLVAEGLKTPESSGSTSMV---VELLEAGFMAKLLRKEGETVRVGEPIALLCEEEDSVSA 424
            R  ST +  PH  +  PMPRLSPSM+TGT+++W+ S GDE         + T  L  +    PE +G   ++   VE  E G++AK+L  EGE       IA++CE +  V A
Sbjct:   23 RLLSTKRYPPHRLM--PMPRLSPSMRTGTLQRWIPSVGDEISSMNVMCEVATSELTED----PEDNGEDGVIILEVESHEEGYLAKILLPEGEAAECDIAIAIVCESDTDVPA 129          
BLAST of jgi.p|Trimin1|66551 vs. uniprot
Match: A0A6T6UT81_9EUKA (Hypothetical protein n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A6T6UT81_9EUKA)

HSP 1 Score: 68.2 bits (165), Expect = 7.690e-11
Identity = 44/120 (36.67%), Postives = 66/120 (55.00%), Query Frame = 2
Query:  101 SSTAKGMPHDTLWLPMPRLSPSMKTGTIKKWLLSPGDEFGEYEAALTIDTDTLVAEGLKTPESSGSTSMVVELLEAGFMAKLLRKEGETVRVGEPIALLCEEEDSVSALQSDTLDIPHDV 460
            SS +  +P   +W+PMP+LSPSM +G I  W +  G+     +    ++ D L+   ++  +S     M  E  E G +A+++  EGE+   GEPIALL E E+ +SAL    LD P DV
Sbjct:   29 SSQSSSLPWH-VWIPMPQLSPSMNSGKIVHWKVKEGERVEITDLIARLEVDNLLENPIE--DSDHKHKMEYESHEEGTIARIVAHEGESRSPGEPIALLVEREEDISALAH--LDPPTDV 143          
BLAST of jgi.p|Trimin1|66551 vs. uniprot
Match: A0A7C6DW42_9BACT (Acetyltransferase component of pyruvate dehydrogenase complex n=1 Tax=Blastocatellia bacterium TaxID=2052146 RepID=A0A7C6DW42_9BACT)

HSP 1 Score: 64.7 bits (156), Expect = 9.720e-9
Identity = 34/94 (36.17%), Postives = 52/94 (55.32%), Query Frame = 2
Query:  146 MPRLSPSMKTGTIKKWLLSPGDEFGEYEAALTIDTDTLVAEGLKTPESSGSTSMVVELLEAGFMAKLLRKEGETVRVGEPIALLCEEEDSVSAL 427
            MP+LSP+M+ G I +WL + GD F   E    +DTD                +M +  L  G + K+++K GET  +GEPIA++ E+ + +SAL
Sbjct:    7 MPKLSPTMEEGQISRWLKNEGDSFEANETLAEVDTD--------------KATMEMTALNGGTLLKIIKKAGETAALGEPIAIIGEKGEDISAL 86          
BLAST of jgi.p|Trimin1|66551 vs. uniprot
Match: A0A7S3F8M8_9VIRI (Hypothetical protein (Fragment) n=1 Tax=Prasinoderma singulare TaxID=676789 RepID=A0A7S3F8M8_9VIRI)

HSP 1 Score: 61.6 bits (148), Expect = 2.330e-8
Identity = 48/135 (35.56%), Postives = 71/135 (52.59%), Query Frame = 2
Query:   29 AMLRFSRAGCQAVRAAKQVCALRASSTAKGMPHDTLWLPMPRLSPSMKTGTIKKWLLSPGDEFGEYEAALTIDTDTLVAEGLKTPESSGSTSMVVELLEAGFMAKLLRKEGET-VRVGEPIALLCEEEDSVSALQ 430
            A+LR   A   A R A  + A+R  +++   PH  L   MP LSP+M  G + +W    GD   E E   TI+TD               ++M  E+LE G++A+LL  +GE  V VG P+A++ EEE  ++AL+
Sbjct:   18 AVLRVPAAPSAAARRAGGL-AMRPFASSALPPHQVL--EMPALSPTMDKGNLAEWNKKEGDRIREGEVLATIETD--------------KSTMAWEVLEEGYIARLLVPDGEQEVEVGVPVAVMVEEEADLAALK 135          
BLAST of jgi.p|Trimin1|66551 vs. uniprot
Match: G7LJ01_MEDTR (Acetyltransferase component of pyruvate dehydrogenase complex n=5 Tax=50 kb inversion clade TaxID=2231393 RepID=G7LJ01_MEDTR)

HSP 1 Score: 62.8 bits (151), Expect = 4.890e-8
Identity = 42/116 (36.21%), Postives = 62/116 (53.45%), Query Frame = 2
Query:   80 QVCALRASSTAKGMP-HDTLWLPMPRLSPSMKTGTIKKWLLSPGDEFGEYEAALTIDTDTLVAEGLKTPESSGSTSMVVELLEAGFMAKLLRKEGET-VRVGEPIALLCEEEDSVS 421
            QV + R+ S+A  +P H  +   MP LSP+M  G I +WL   GD+    E    ++TD    E              +E +E GF+AK++RKEGE  ++VGE IA+  EEE  ++
Sbjct:   98 QVLSRRSYSSASDLPPHQEIG--MPSLSPTMTEGNIARWLKKEGDKVSPGEVLCEVETDKATVE--------------MECMEEGFLAKIVRKEGEKEIQVGEVIAITVEEEADIA 197          
BLAST of jgi.p|Trimin1|66551 vs. uniprot
Match: A0A7S3VCQ0_9STRA (Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3VCQ0_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 5.370e-8
Identity = 35/96 (36.46%), Postives = 52/96 (54.17%), Query Frame = 2
Query:  146 MPRLSPSMKTGTIKKWLLSPGDEFGEYEAALTIDTDTLVAEGLKTPESSGSTSMVVELLEAGFMAKLLRKEGETVRVGEPIALLCEEEDSVSALQS 433
            MP LS +M  G I +WL S GDE    EA + +++D                 M VE  E GF+AK++++EGETV VG  + ++  EED ++ + S
Sbjct:  191 MPALSSTMVEGKIVQWLKSEGDEILAGEAIMVVESD--------------KADMDVEAFEDGFLAKIIKEEGETVDVGAAVGIIVPEEDDIAKISS 272          
BLAST of jgi.p|Trimin1|66551 vs. uniprot
Match: A0A1X0NXH9_9TRYP (Putative dihydrolipoamide acetyltransferase n=1 Tax=Trypanosoma theileri TaxID=67003 RepID=A0A1X0NXH9_9TRYP)

HSP 1 Score: 62.4 bits (150), Expect = 5.760e-8
Identity = 39/100 (39.00%), Postives = 52/100 (52.00%), Query Frame = 2
Query:  128 DTLWLPMPRLSPSMKTGTIKKWLLSPGDEFGEYEAALTIDTDTLVAEGLKTPESSGSTSMVVELLEAGFMAKLLRKEGETVRVGEPIALLCEEEDSVSAL 427
            D L + MP LSPSM+TGTI +W    GD   E E   T+ TD  V +   T              +AG++AK+L K GETV V + IAL+    + V+ L
Sbjct:  126 DILSIFMPALSPSMETGTIVEWKKKVGDLVKENEVFCTVQTDKAVVDYTNT-------------FDAGYLAKILHKNGETVPVAKTIALMVSNAEDVAKL 212          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|66551 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CE97_9STRA7.470e-113100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6H5JR22_9PHAE1.860e-2343.61Lipoyl-binding domain-containing protein n=1 Tax=E... [more]
A0A7S3R2U8_DUNTE2.750e-1339.39Hypothetical protein n=1 Tax=Dunaliella tertiolect... [more]
A0A7S4HG71_9EUKA3.960e-1238.05Hypothetical protein n=1 Tax=Prymnesium polylepis ... [more]
A0A6T6UT81_9EUKA7.690e-1136.67Hypothetical protein n=1 Tax=Amorphochlora amoebif... [more]
A0A7C6DW42_9BACT9.720e-936.17Acetyltransferase component of pyruvate dehydrogen... [more]
A0A7S3F8M8_9VIRI2.330e-835.56Hypothetical protein (Fragment) n=1 Tax=Prasinoder... [more]
G7LJ01_MEDTR4.890e-836.21Acetyltransferase component of pyruvate dehydrogen... [more]
A0A7S3VCQ0_9STRA5.370e-836.46Dihydrolipoamide acetyltransferase component of py... [more]
A0A1X0NXH9_9TRYP5.760e-839.00Putative dihydrolipoamide acetyltransferase n=1 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_42contigContig_42:143972..144885 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|66551|CE66550_43
Descriptiontemperature-gated cation channel activity
COG categoryC
Max annot lvl33090|Viridiplantae
EggNOG OGsCOG0508@1|root,COG0666@1|root,KOG0510@2759|Eukaryota,KOG0557@2759|Eukaryota,382X7@33090|Viridiplantae
Evalue8.88e-21
Seed ortholog3067.XP_002945888.1
Hectar predicted targeting categorymitochondrion
Ec32 ortholog descriptionpyruvate dehydrogenase E1 component subunit beta
Ec32 orthologEc-00_003350.1
TranscriptId66873
TrackFilteredModels1
ProteinId66551
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|66551gene_5612Tribonema minus UTEX_B_3156 geneContig_42 143972..144885 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_5612_2exon_5612_2Tribonema minus UTEX_B_3156 exonContig_42 143972..144472 -
exon_5612_1exon_5612_1Tribonema minus UTEX_B_3156 exonContig_42 144770..144885 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_5612UTR3_5612Tribonema minus UTEX_B_3156 three_prime_UTRContig_42 143972..144053 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_5612CDS_5612Tribonema minus UTEX_B_3156 CDSContig_42 144770..144854 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_5612UTR5_5612Tribonema minus UTEX_B_3156 five_prime_UTRContig_42 144855..144885 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|66551Trimin1|66551|CE66550_43Tribonema minus UTEX_B_3156 polypeptideContig_42 144054..144854 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_5612 ID=mRNA_5612|Name=jgi.p|Trimin1|66551|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=617bp|location=Sequence derived from alignment at Contig_42:143972..144885- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GAAAAAAACACCAACGCACACACACGACGCTATGCTGAGATTCTCGAGAG
CTGGGTGTCAAGCCGTCAGGGCCGCGAAGCAAGTTTGCGCGTTGCGCGCG
TCGTCTACCGCAAAAGGGATGCCGCATGACACACTGTGGCTGCCCATGCC
GCGGCTCAGCCCCAGCATGAAGACAGGCACCATAAAGAAGTGGCTGCTGT
CGCCTGGGGACGAATTTGGAGAGTACGAAGCAGCCTTGACCATAGACACC
GACACGCTGGTGGCTGAGGGCCTCAAGACGCCCGAGAGCAGCGGCTCAAC
GTCCATGGTGGTGGAGCTGCTGGAAGCGGGATTCATGGCGAAATTGCTCA
GGAAAGAAGGGGAAACAGTGCGAGTGGGTGAGCCCATTGCGCTGCTCTGC
GAAGAGGAGGACAGCGTGTCCGCGCTGCAGAGCGACACGTTGGACATACC
GCATGATGTGCAGTTGTATGAGGAAGGCAACGGCCATAAAGTGCCGCAGC
TGCAGGCATTCTTAGACAAGGAGCAGCCTGAGTGAGCATACAGCAACGTT
CAATTTTGACCTGCCTGTACATATTGTACACCAGCAAGCGCTCTCGAGAC
CAAAATGAAAACATGCA
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protein sequence of jgi.p|Trimin1|66551

>Trimin1|66551|CE66550_43 ID=Trimin1|66551|CE66550_43|Name=jgi.p|Trimin1|66551|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=168bp
MLRFSRAGCQAVRAAKQVCALRASSTAKGMPHDTLWLPMPRLSPSMKTGT
IKKWLLSPGDEFGEYEAALTIDTDTLVAEGLKTPESSGSTSMVVELLEAG
FMAKLLRKEGETVRVGEPIALLCEEEDSVSALQSDTLDIPHDVQLYEEGN
GHKVPQLQAFLDKEQPE*
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mRNA from alignment at Contig_42:143972..144885-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5612 ID=mRNA_5612|Name=jgi.p|Trimin1|66551|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=914bp|location=Sequence derived from alignment at Contig_42:143972..144885- (Tribonema minus UTEX_B_3156 )
GAAAAAAACACCAACGCACACACACGACGCTATGCTGAGATTCTCGAGAG CTGGGTGTCAAGCCGTCAGGGCCGCGAAGCAAGTTTGCGCGTTGCGCGCG TCGTCTACCGCAAAAGGTCAGTACGCGCTGCCCTGCCTCAGTGTCGAACA TGTTCTGCGTTGACGCTGCTACATCTGACTCCACGAAGATGAGACAGACT GTGTGCTTTCAGAGTCTTCGTATGGTGCGTTCGTTGCCTTCGCTGGCAAT GCCGCGAATCACAACGTCCCGCGTGTAGTGCTACCAAGATTTTAGAGATG TGCGCAGTTGTGCATTTCATAGATTCTCAGGTGCTAGATGCGTGCTCCCC ATCATCAATAGCGCTGTCGCTTAGTAACGACACCACACCATGCTGTACCT CTGGTGGCCTCAGGGATGCCGCATGACACACTGTGGCTGCCCATGCCGCG GCTCAGCCCCAGCATGAAGACAGGCACCATAAAGAAGTGGCTGCTGTCGC CTGGGGACGAATTTGGAGAGTACGAAGCAGCCTTGACCATAGACACCGAC ACGCTGGTGGCTGAGGGCCTCAAGACGCCCGAGAGCAGCGGCTCAACGTC CATGGTGGTGGAGCTGCTGGAAGCGGGATTCATGGCGAAATTGCTCAGGA AAGAAGGGGAAACAGTGCGAGTGGGTGAGCCCATTGCGCTGCTCTGCGAA GAGGAGGACAGCGTGTCCGCGCTGCAGAGCGACACGTTGGACATACCGCA TGATGTGCAGTTGTATGAGGAAGGCAACGGCCATAAAGTGCCGCAGCTGC AGGCATTCTTAGACAAGGAGCAGCCTGAGTGAGCATACAGCAACGTTCAA TTTTGACCTGCCTGTACATATTGTACACCAGCAAGCGCTCTCGAGACCAA AATGAAAACATGCA
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Coding sequence (CDS) from alignment at Contig_42:143972..144885-

>mRNA_5612 ID=mRNA_5612|Name=jgi.p|Trimin1|66551|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=504bp|location=Sequence derived from alignment at Contig_42:143972..144885- (Tribonema minus UTEX_B_3156 )
ATGCTGAGATTCTCGAGAGCTGGGTGTCAAGCCGTCAGGGCCGCGAAGCA
AGTTTGCGCGTTGCGCGCGTCGTCTACCGCAAAAGGGATGCCGCATGACA
CACTGTGGCTGCCCATGCCGCGGCTCAGCCCCAGCATGAAGACAGGCACC
ATAAAGAAGTGGCTGCTGTCGCCTGGGGACGAATTTGGAGAGTACGAAGC
AGCCTTGACCATAGACACCGACACGCTGGTGGCTGAGGGCCTCAAGACGC
CCGAGAGCAGCGGCTCAACGTCCATGGTGGTGGAGCTGCTGGAAGCGGGA
TTCATGGCGAAATTGCTCAGGAAAGAAGGGGAAACAGTGCGAGTGGGTGA
GCCCATTGCGCTGCTCTGCGAAGAGGAGGACAGCGTGTCCGCGCTGCAGA
GCGACACGTTGGACATACCGCATGATGTGCAGTTGTATGAGGAAGGCAAC
GGCCATAAAGTGCCGCAGCTGCAGGCATTCTTAGACAAGGAGCAGCCTGA
GTGA
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