mRNA_559 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|132345
Unique NamemRNA_559
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|132345 vs. uniprot
Match: A0A835ZBE1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBE1_9STRA)

HSP 1 Score: 100 bits (248), Expect = 4.840e-21
Identity = 42/42 (100.00%), Postives = 42/42 (100.00%), Query Frame = 1 
Query:    1 GAAAQWCREHKTGDMQDVAHKRCMRCGLKIPKFGTEDGRPTH 126
            GAAAQWCREHKTGDMQDVAHKRCMRCGLKIPKFGTEDGRPTH
Sbjct:  366 GAAAQWCREHKTGDMQDVAHKRCMRCGLKIPKFGTEDGRPTH 407
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BLAST of jgi.p|Trimin1|132345 vs. uniprot
Match: A0A835ZGH9_9STRA (Uncharacterized protein (Fragment) n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZGH9_9STRA)

HSP 1 Score: 87.0 bits (214), Expect = 1.790e-17
Identity = 35/38 (92.11%), Postives = 37/38 (97.37%), Query Frame = 1 
Query:   19 CREHKTGDMQDVAHKRCMRCGLKIPKFGTEDGRPTHCG 132
            CREHKTGDMQDV+HKRCM+C LKIPKFGTEDGRPTHCG
Sbjct:    1 CREHKTGDMQDVSHKRCMQCRLKIPKFGTEDGRPTHCG 38
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BLAST of jgi.p|Trimin1|132345 vs. uniprot
Match: A0A836CCS5_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCS5_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 2.470e-14
Identity = 32/42 (76.19%), Postives = 33/42 (78.57%), Query Frame = 1 
Query:    1 GAAAQWCREHKTGDMQDVAHKRCMRCGLKIPKFGTEDGRPTH 126
            G  AQWC +HKTGDMQDVAHK C  CGLKIP FG EDG PTH
Sbjct:    9 GVGAQWCSDHKTGDMQDVAHKMCQGCGLKIPIFGIEDGSPTH 50
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|132345 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A835ZBE1_9STRA4.840e-21100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835ZGH9_9STRA1.790e-1792.11Uncharacterized protein (Fragment) n=2 Tax=Tribone... [more]
A0A836CCS5_9STRA2.470e-1476.19Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_2contigContig_2:306395..307003 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|132345|gw1.2.62.1
Hectar predicted targeting categoryother localisation
TranscriptId132667
TrackFilteredModels1
ProteinId132345
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|132345gene_559Tribonema minus UTEX_B_3156 geneContig_2 306395..307003 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_559_1exon_559_1Tribonema minus UTEX_B_3156 exonContig_2 306395..307003 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_559CDS_559Tribonema minus UTEX_B_3156 CDSContig_2 306395..307003 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|132345Trimin1|132345|gw1.2.62.1Tribonema minus UTEX_B_3156 polypeptideContig_2 306395..307003 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_559 ID=mRNA_559|Name=jgi.p|Trimin1|132345|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=609bp|location=Sequence derived from alignment at Contig_2:306395..307003+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GGGGCTGCAGCACAGTGGTGCAGGGAGCACAAGACCGGAGATATGCAAGA
TGTTGCACACAAGAGGTGCATGCGGTGTGGACTGAAGATACCCAAGTTTG
GGACGGAGGACGGCAGGCCGACCCACTGCGGTGACTGCAAGACGGCAGAC
ATGCGTGATGTTGGCAACAATAAGTGTAAGGCTTGCCGACTGAAGCAACC
AATCTTTGCGACGGAGGAGGGCTACCCCATGCACTGCGGTGACTGCAAGA
CGGCAGACATGCGAGATGTTATAAGCAGGATGTGCGAGGGGTGCAGTCTT
AAGCGACCATGCTTCGGGGTGAAGGATGGCAGCCCCACCCACTGCGGTGA
TTGCAAGACGGCAGTCATGAGAGATGTTGCACACAACAAGTGTGAAGCTT
GTGGATTGAAGATACCCACCTTTGGCATGGAGGATAGCAGCCCCACCCAC
TGCGGTGACTGCAAGACGGCAGACATGCGTGATGTTCGCAACAATAAATG
CAAGGATTGCGGACTGAAGCAACCAAGCTTCGGGACGGAGGAGGGCGACC
CCACGCACTGCGGTGACTGCAAGACGTCCAACATGCGAAATGTTGTCAGC
AAAATATGC
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protein sequence of jgi.p|Trimin1|132345

>Trimin1|132345|gw1.2.62.1 ID=Trimin1|132345|gw1.2.62.1|Name=jgi.p|Trimin1|132345|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=203bp
GAAAQWCREHKTGDMQDVAHKRCMRCGLKIPKFGTEDGRPTHCGDCKTAD
MRDVGNNKCKACRLKQPIFATEEGYPMHCGDCKTADMRDVISRMCEGCSL
KRPCFGVKDGSPTHCGDCKTAVMRDVAHNKCEACGLKIPTFGMEDSSPTH
CGDCKTADMRDVRNNKCKDCGLKQPSFGTEEGDPTHCGDCKTSNMRNVVS
KIC
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mRNA from alignment at Contig_2:306395..307003+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_559 ID=mRNA_559|Name=jgi.p|Trimin1|132345|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=609bp|location=Sequence derived from alignment at Contig_2:306395..307003+ (Tribonema minus UTEX_B_3156 )
GGGGCTGCAGCACAGTGGTGCAGGGAGCACAAGACCGGAGATATGCAAGA
TGTTGCACACAAGAGGTGCATGCGGTGTGGACTGAAGATACCCAAGTTTG
GGACGGAGGACGGCAGGCCGACCCACTGCGGTGACTGCAAGACGGCAGAC
ATGCGTGATGTTGGCAACAATAAGTGTAAGGCTTGCCGACTGAAGCAACC
AATCTTTGCGACGGAGGAGGGCTACCCCATGCACTGCGGTGACTGCAAGA
CGGCAGACATGCGAGATGTTATAAGCAGGATGTGCGAGGGGTGCAGTCTT
AAGCGACCATGCTTCGGGGTGAAGGATGGCAGCCCCACCCACTGCGGTGA
TTGCAAGACGGCAGTCATGAGAGATGTTGCACACAACAAGTGTGAAGCTT
GTGGATTGAAGATACCCACCTTTGGCATGGAGGATAGCAGCCCCACCCAC
TGCGGTGACTGCAAGACGGCAGACATGCGTGATGTTCGCAACAATAAATG
CAAGGATTGCGGACTGAAGCAACCAAGCTTCGGGACGGAGGAGGGCGACC
CCACGCACTGCGGTGACTGCAAGACGTCCAACATGCGAAATGTTGTCAGC
AAAATATGC
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Coding sequence (CDS) from alignment at Contig_2:306395..307003+

>mRNA_559 ID=mRNA_559|Name=jgi.p|Trimin1|132345|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=609bp|location=Sequence derived from alignment at Contig_2:306395..307003+ (Tribonema minus UTEX_B_3156 )
GGGGCTGCAGCACAGTGGTGCAGGGAGCACAAGACCGGAGATATGCAAGA
TGTTGCACACAAGAGGTGCATGCGGTGTGGACTGAAGATACCCAAGTTTG
GGACGGAGGACGGCAGGCCGACCCACTGCGGTGACTGCAAGACGGCAGAC
ATGCGTGATGTTGGCAACAATAAGTGTAAGGCTTGCCGACTGAAGCAACC
AATCTTTGCGACGGAGGAGGGCTACCCCATGCACTGCGGTGACTGCAAGA
CGGCAGACATGCGAGATGTTATAAGCAGGATGTGCGAGGGGTGCAGTCTT
AAGCGACCATGCTTCGGGGTGAAGGATGGCAGCCCCACCCACTGCGGTGA
TTGCAAGACGGCAGTCATGAGAGATGTTGCACACAACAAGTGTGAAGCTT
GTGGATTGAAGATACCCACCTTTGGCATGGAGGATAGCAGCCCCACCCAC
TGCGGTGACTGCAAGACGGCAGACATGCGTGATGTTCGCAACAATAAATG
CAAGGATTGCGGACTGAAGCAACCAAGCTTCGGGACGGAGGAGGGCGACC
CCACGCACTGCGGTGACTGCAAGACGTCCAACATGCGAAATGTTGTCAGC
AAAATATGC
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