mRNA_5584 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|162124
Unique NamemRNA_5584
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|162124 vs. uniprot
Match: A0A835Z5Q7_9STRA (Ef-hand domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5Q7_9STRA)

HSP 1 Score: 697 bits (1798), Expect = 9.870e-254
Identity = 341/341 (100.00%), Postives = 341/341 (100.00%), Query Frame = 1
Query:    1 MYASHGSLPDLPMVPGIYRAPNGYLKSCTGQGLGGSGMSCAGSVAPRSTVGPRPGTALGTHHGVNSKKVPSYITKEGQVLRFRAYFQEPVYEGGSVDAAGFRVRVFAVNYHLSDETMAIEEPRVQNSGLTQGKFMKRTKVERPRGVGGGVYQPADFCVGEEIWVYGRRFRIVDADARTREWYRENLGLEQGPAEDVPDDGYARERQRFEVPKQTEAGLPLGTGSGVAAGGAVTGGAAARAVRREKGEYFKKDRKVLRFFCRYEDQRLQGDKRDYVLYYYLLNDTVEVKEVAAEGRHNFPNLLRRQKLPRDSLHVPTSYGGTVSPRDGEREPMRAVTWQDLK 1023
            MYASHGSLPDLPMVPGIYRAPNGYLKSCTGQGLGGSGMSCAGSVAPRSTVGPRPGTALGTHHGVNSKKVPSYITKEGQVLRFRAYFQEPVYEGGSVDAAGFRVRVFAVNYHLSDETMAIEEPRVQNSGLTQGKFMKRTKVERPRGVGGGVYQPADFCVGEEIWVYGRRFRIVDADARTREWYRENLGLEQGPAEDVPDDGYARERQRFEVPKQTEAGLPLGTGSGVAAGGAVTGGAAARAVRREKGEYFKKDRKVLRFFCRYEDQRLQGDKRDYVLYYYLLNDTVEVKEVAAEGRHNFPNLLRRQKLPRDSLHVPTSYGGTVSPRDGEREPMRAVTWQDLK
Sbjct:    1 MYASHGSLPDLPMVPGIYRAPNGYLKSCTGQGLGGSGMSCAGSVAPRSTVGPRPGTALGTHHGVNSKKVPSYITKEGQVLRFRAYFQEPVYEGGSVDAAGFRVRVFAVNYHLSDETMAIEEPRVQNSGLTQGKFMKRTKVERPRGVGGGVYQPADFCVGEEIWVYGRRFRIVDADARTREWYRENLGLEQGPAEDVPDDGYARERQRFEVPKQTEAGLPLGTGSGVAAGGAVTGGAAARAVRREKGEYFKKDRKVLRFFCRYEDQRLQGDKRDYVLYYYLLNDTVEVKEVAAEGRHNFPNLLRRQKLPRDSLHVPTSYGGTVSPRDGEREPMRAVTWQDLK 341          
BLAST of jgi.p|Trimin1|162124 vs. uniprot
Match: D8LFP6_ECTSI (Ef-hand domain (C-terminal) containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFP6_ECTSI)

HSP 1 Score: 340 bits (873), Expect = 1.300e-112
Identity = 187/367 (50.95%), Postives = 226/367 (61.58%), Query Frame = 1
Query:   28 DLPMVPGIYRAPNGYLKSCTGQGLGGSGMSCAGSVAPRST---VGPRPGTALGTHHGVNSKK---VPSYITKEGQVLRFRAYFQEPVYEGGSVDAAGFRVRVFAVNYHLSDETMAIEEPRVQNSGLTQGKFMKRTKVERP--------RGVGGG---------------------------------VYQPADFCVGEEIWVYGRRFRIVDADARTREWYRENLGLEQGPAEDVPDDGYARERQRFEVPKQTEAGLPLGTGSGVAAGGAVTGGAAARAVRREKGEYFKKDRKVLRFFCRYEDQRLQGDKRDYVLYYYLLNDTVEVKEVAAEGRHNFPNLLRRQKLPRDSLHVPTSYGGTVSPRDGER 987
            D PMVPGI R    Y+K   G   G SGM  +    P       G RPGTA G+     +++   +P YITKE QVLRF AYFQEPV+EGGS+DA GFRVR F++ Y LSD T++IEEPR+ NSGLTQGKFM+R +V RP        R  GG                                  +Y P DF VGEE+W++GRRFRIVDAD  TR+W++ NLG    P E+ P+DGY  ER +   PK+    +P                       REKGE++KKDRKVLRFFC+Y+D RLQGDKRDY+LYYYLLNDT+E+KEVAAEGRHNFPNLLRRQKLP+DS+ VPT YGG +SPRD +R
Sbjct:   20 DFPMVPGIRRGHGPYVKMLQGARPGSSGMIRSSKSQPILRGYGEGTRPGTA-GSSVPARTREGSCIPDYITKEKQVLRFFAYFQEPVHEGGSMDATGFRVRKFSIMYFLSDSTISIEEPRITNSGLTQGKFMRRLQVTRPLNSCARDARSAGGSATPVRATGXXXXXXXXXXXXXXXXXXTTPPPRDIYAPGDFGVGEEVWIHGRRFRIVDADLTTRQWFQRNLGRSLKPTENYPEDGYGAERAKVSAPKKRSM-MPA----------------------REKGEFYKKDRKVLRFFCKYKDCRLQGDKRDYILYYYLLNDTIEIKEVAAEGRHNFPNLLRRQKLPKDSMFVPTGYGGVISPRDPQR 362          
BLAST of jgi.p|Trimin1|162124 vs. uniprot
Match: A0A6H5JPJ7_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPJ7_9PHAE)

HSP 1 Score: 315 bits (807), Expect = 2.960e-101
Identity = 164/303 (54.13%), Postives = 201/303 (66.34%), Query Frame = 1
Query:  205 VPSYITKEGQVLRFRAYFQEPVYEGGSVDAAGFRVRVFAVNYHLSDETMAIEEPRVQNSGLTQGKFMKRTKVERP--------RGVGGG---------------------------------VYQPADFCVGEEIWVYGRRFRIVDADARTREWYRENLGLEQGPAEDVPDDGYARERQRFEVPKQTEAGL----PLGTGSGVAAGGAVTGGAAARAVRREKGEYFKKDRKVLRFFCRYEDQRLQGDKRDYVLYYYLLNDTVEVKEVAAEGRHNFPNLLRRQKLPRDSLHVPTSYGGTVSPRD 978
            +P YITKE QVLRF AYFQEPV+EGGS+DA GFRVR F++ Y LSD T++IEEPR+ NSGLTQGKFM+R +V RP        R  GG                                  +Y P DF VGEE+W++GRRFRIVDAD  TR+W++ NLG     AE+ P+DGY  ER +   PK++   +    P    + +A   ++          REKGE++KKDRKVLRFFC+Y+D RLQGDKRDY+LYYYLLNDT+E+KEVAAEGRHNFPNLLRRQKLP+DS+ VPT YGG +SPRD
Sbjct:  163 IPDYITKEKQVLRFFAYFQEPVHEGGSMDATGFRVRKFSIMYFLSDSTISIEEPRITNSGLTQGKFMRRLQVTRPLNSCARDARSAGGSATPVRATGXXXXXXXXXXXXXXXXXATTPPPRDIYAPGDFGVGEEVWIHGRRFRIVDADLTTRQWFQRNLGRSLKAAENYPEDGYGAERAKVSAPKKSWEKIAHCPPAKFPNKLARFRSMM-------PAREKGEFYKKDRKVLRFFCKYKDSRLQGDKRDYILYYYLLNDTIEIKEVAAEGRHNFPNLLRRQKLPKDSMFVPTGYGGVISPRD 458          
BLAST of jgi.p|Trimin1|162124 vs. uniprot
Match: A0A7S1UHB1_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UHB1_9STRA)

HSP 1 Score: 192 bits (488), Expect = 3.120e-51
Identity = 127/369 (34.42%), Postives = 188/369 (50.95%), Query Frame = 1
Query:   19 SLPDLPMVPGIYRAPNGYLKSCTGQGLGGSGMSCAGSVAPRS---TVGPRPGTALG------THHGVNSKKVPSYI-------------------------TKEGQVLRFRAYFQEPVYEGGSVDAAGFRVRVFAVNYHLSDETMAIEEPRVQNSGLTQGKFMKRTKVERPRGVGGGVYQPADFCVGEEIWVYGRRFRIVDADARTREWYRENLGLEQGPAEDVPDDGYARERQRFEVPKQTEAGLPLGTGSGVAAGGAVTGGAAARAVRREKGEYFKKDRKVLRFFCRYEDQRLQGDKRDYVLYYYLLNDTVEVKEVAAEGRHNFPNLLRRQKLPRDSLHVPTSYGGTVSPRDGEREPMRAVTWQDLK 1023
            S+P LP VPG+ R  +GY+K+ T  G            APR    T  P  G AL        +  V S+  P +                            +G VLRF  Y+QEP+ E     A+   VR   +N+++ D T++I+EP++ NSG+ QG+FM+RT V +   V    ++  DF +G +I ++GR F+IVDAD+ TR  Y +++G+  G +  +P     + +QR   P+                             R  KG++F +DRKVLRF+C ++D R  G+ RDY+L+Y+LLNDTVE++EV ++GRHNFP LLRRQKLP+    VP    G V   D +R     +T +D+K
Sbjct:    4 SVPVLPCVPGMRREMSGYMKAKTQNG----------GYAPRGHLLTEKPPVGKALTFGAPTLDNVMVQSQSEPVFDRSFNKDYAMGPETSSPDATAAAAANNSDGTVLRFFVYYQEPL-EDYFESASSSTVRRCILNFYMEDATISIDEPKIANSGIDQGRFMRRTLVLKDASVN---FEAGDFFIGADINIFGRVFKIVDADSATRREY-DSMGMPMGGS--LPYPAAPKGQQRVRNPESPS--------------------------RYSKGQFFNRDRKVLRFYCTWQDDRTYGEFRDYILHYFLLNDTVEIREVFSQGRHNFPILLRRQKLPKSCYIVPNGVSGAVEQPDMQRPQFDFITHEDIK 329          
BLAST of jgi.p|Trimin1|162124 vs. uniprot
Match: A0A250XRR2_9CHLO (Uncharacterized protein n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250XRR2_9CHLO)

HSP 1 Score: 156 bits (394), Expect = 3.910e-39
Identity = 105/301 (34.88%), Postives = 161/301 (53.49%), Query Frame = 1
Query:  127 SVAPRSTVGPRPGTALGTHHGVNSKKVPSYITKEGQVLRFRAYFQEPVYEGGSVDAAGFRVRVFAVNYHLSDETMAIEEPRVQNSGLTQGKFMKRTKVERPRGVGGGVYQPADFCVGEEIWVYGRRFRIVDADARTREWYRENLGLEQGPAEDVPDDGYARERQRFEVPKQTEAGLPLGTGSGVAAGGAVTG-------------GAAARAVRREK-GEYFKKDRKVLRFFCRYED-QRLQGDKRDYVLYYYLLNDTVEVKEV--AAEGRHNFPNLLRRQKLPRDSLHV-PTSYGGTVSPR 975
            +V   +   P  G +  T    +  K+P ++  + +VLRF  YF+E V E    +   +RVR   + Y+L D++M I EPR  NSG+ QG F+KR K  +  G   G + P DF VGEE+ +Y R + +VDAD+ TRE+Y    G EQGP    PDD     R  F        G+  G  +GVA+ G+ T              G A+  +  +K  ++ + ++KVLRF+C ++D Q + GD+R YVL+Y+L +D+VE+ E+  +  GR  +P  L+R  LP+    + P + G  + PR
Sbjct:   53 AVQTLAATAPLTGASTLTFSVDSPTKLPQWVENDRKVLRFYGYFKETVNES---NMENYRVRKVILYYYLEDDSMHIAEPRQDNSGIPQGIFVKRHKATKDEG---GFFSPLDFSVGEELTIYARTYYLVDADSFTREYYIARHGKEQGPPMPYPDDPVDAYRTTF--------GMNRGLKTGVASPGSTTQRLDDFKSYMEARLGKASHMLGDDKLRQWLENNKKVLRFYCVWDDRQGMYGDRRPYVLHYFLEDDSVEILEIRDSNNGRDPYPVFLKRAPLPKSVSRIGPNTVG--IKPR 337          
BLAST of jgi.p|Trimin1|162124 vs. uniprot
Match: A0A0D2JH69_9CHLO (EF-hand domain-containing protein 1 n=1 Tax=Monoraphidium neglectum TaxID=145388 RepID=A0A0D2JH69_9CHLO)

HSP 1 Score: 148 bits (374), Expect = 2.290e-38
Identity = 101/263 (38.40%), Postives = 148/263 (56.27%), Query Frame = 1
Query:  154 PRPGTALGTHHGVNSKKVPSYITKEGQVLRFRAYFQEPVYEGGSVDAAGFRVRVFAVNYHLSDETMAIEEPRVQNSGLTQGKFMKRTKVERPRGVGGGV-YQPADFCVGEEIWVYGRRFRIVDADARTREWYRENLGLEQGPAEDVPDDGYARERQRFEVPKQTEAGLPLGTGSGVAAGGAVTGGAAARAVRREK-GEYFKKDRKVLRFFCRYED-QRLQGDKRDYVLYYYLLNDTVEVKEVAAE--GRHNFPNLLRRQKLPR 927
            PR  +A+G       + +P ++  + +VLRF  YFQE V E    +    R+R  A++Y+L+D+++ + EP+  NSG+ QG F++R +V  PRG G G    PAD  VG  I VYGR F +VD D  TR W+RENL LEQ  A+  P D     R +F +   T  G P    + +A       G  +  +  +K  ++   + KVLRF+C ++D Q + GD+R YVL++YL +DTVE+ EV     GR  FP  ++R  LPR
Sbjct:    6 PRAASAIG-------ETLPKWVENDRKVLRFWGYFQESVTES---NIENHRMRRVALHYYLADDSLQVAEPKQDNSGIPQGIFVRRHQV--PRGDGSGATIVPADLAVGATIDVYGRTFFLVDCDQFTRAWFRENLQLEQADAQGYPSDQVDAYRTKFGL---TSTG-PSKKSNDLATFVEARLGKPSHLLEGDKLRQFIANNGKVLRFWCVWDDRQGMYGDRRPYVLHFYLEDDTVEINEVHERNSGRDPFPIFVKRGPLPR 252          
BLAST of jgi.p|Trimin1|162124 vs. uniprot
Match: F2UH95_SALR5 (EFHC1 protein n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2UH95_SALR5)

HSP 1 Score: 151 bits (381), Expect = 2.400e-37
Identity = 92/265 (34.72%), Postives = 144/265 (54.34%), Query Frame = 1
Query:  205 VPSYITKEGQVLRFRAYFQEPVYEGGSVDAAGFRVRVFAVNYHLSDETMAIEEPRVQNSGLTQGKFMKRTKVERPRGVGGGVYQPADFCVGEEIWVYGRRFRIVDADARTREWYRENLGLEQGPAEDVPDDGYARERQRFEVPKQTEAGLPLGTGSGVAAGGAVTGGAAARAVRREKGEYFKKDRKVLRFFCRYEDQ-RLQGDKRDYVLYYYLLNDTVEVKEVAA--EGRHNFPNLLRRQKLPRDSLHVPTSYGGTVSPRDGERE 990
            +P+Y+  + +VL F  YF+E V E        FRVR   + YHL D+TM++ EP V NSGL QGK ++R ++  P+   G  +   D  VG  + +YGR FR+ D DA T+E+   N G+E    E VP+D Y  +R+  E P                        A  ++   +  ++ + DRKVLRF+C ++D+  L G+ R + L Y+L++DT+E++E     +GR NFP LLRRQ++P++  ++P ++   V     E E
Sbjct:   81 IPAYVALDKKVLTFDGYFKETVTESAEEH---FRVRRVKIYYHLEDDTMSVLEPPVPNSGLPQGKLIRRQRL--PKDARGNTWSWKDLNVGMNLPIYGRVFRVTDCDAFTKEFLLSN-GIELNATEQVPEDPYTVKRKVVEQPSTL---------------------ATTKSDFDKLKQFIELDRKVLRFYCVWDDRANLYGELRPFTLLYFLVDDTIEIREQHQPNDGRDNFPLLLRRQRVPKNPKNIPRAFPKIVMEPSQEEE 318          
BLAST of jgi.p|Trimin1|162124 vs. uniprot
Match: A0A7J7PZC6_9CHLO (Uncharacterized protein n=2 Tax=Scenedesmaceae TaxID=3086 RepID=A0A7J7PZC6_9CHLO)

HSP 1 Score: 150 bits (380), Expect = 4.760e-37
Identity = 107/304 (35.20%), Postives = 157/304 (51.64%), Query Frame = 1
Query:   70 YLKSCTGQGLGGSG-MSCAGSVAPRST---VGPRPGTALGTHHGVNSKKVPSYITKEGQVLRFRAYFQEPVYEGGSVDAAGFRVRVFAVNYHLSDETMAIEEPRVQNSGLTQGKFMKRTKVERPRGVGGGVYQPADFCVGEEIWVYGRRFRIVDADARTREWYRENLGLEQGPAEDVPDDGYARERQRFEVPKQTEAGLPLGTGSGVAAGGAVTGGAAARAVRREK-GEYFKKDRKVLRFFCRYEDQR-LQGDKRDYVLYYYLLNDTVEVKEVAAE--GRHNFPNLLRRQKLPRDSLHVPTSYG 957
            YLK    +    SG MS  G+  P  T    G   G+        ++  +P ++ + GQVLRF  +FQE V E    +    RVR   V Y+L+D+T+ + EP+  NSG+ QG F+KR +V++  G     + P D  VG+ + VYGR + +VDADA TR WY E L L+     D P D     RQRF +     A  P+   + +A       G  +  +  ++  ++  +  KVLRF+  ++D+  L GD+R YV++YYL +DTVE+ EV     GR  FP  L+R  LPR+     T  G
Sbjct:   87 YLKGYQHENPDISGLMSSDGAARPSGTRISAGTFCGSPKSAPTSPSATGLPKWVEQNGQVLRFFGFFQEAVTES---NIENHRVRRVVVLYYLADDTLQVTEPKQDNSGIPQGVFVKRHQVDKEDGT---PFTPTDLAVGQTVTVYGRTYILVDADAFTRRWYDEKLDLQLAAPGDYPGDPVDEYRQRFGL-----ASAPVKKSNDLATFVEARLGKPSHLLEGDRLKQFLAQSGKVLRFYAVWDDRSGLCGDRRPYVVHYYLEDDTVEINEVHERNSGRDPFPVFLKRAPLPREKPRGATLTG 379          
BLAST of jgi.p|Trimin1|162124 vs. uniprot
Match: A0A7S0S6H3_9CHLO (Hypothetical protein n=1 Tax=Chlamydomonas leiostraca TaxID=1034604 RepID=A0A7S0S6H3_9CHLO)

HSP 1 Score: 150 bits (379), Expect = 4.860e-37
Identity = 103/311 (33.12%), Postives = 162/311 (52.09%), Query Frame = 1
Query:  124 GSVAPRSTVGPRPGTAL---GTHHGVNS-KKVPSYITKEGQVLRFRAYFQEPVYEGGSVDAAGFRVRVFAVNYHLSDETMAIEEPRVQNSGLTQGKFMKRTKVERPRGVGGGVYQPADFCVGEEIWVYGRRFRIVDADARTREWYRENLGLEQGPAEDVPDDGYARERQRFEVPKQTEAGLPLGTGSGVAAGGAVTGGAAARAVRREK-------GEYFKKDRKVLRFFCRYED-QRLQGDKRDYVLYYYLLNDTVEVKEVAAE--GRHNFPNLLRRQKLPRDSLHVPTSYGGTVSPRDGEREPMRAVTWQ 1014
            G+ +P +T+    GT       + G +S  K+P ++  + +VLRF  YF+E V E    +    R+R   + Y+L D++M + EPR  NSG+ QG F+KR K+ +  GV    + P DF VG+E+ +YGR F +VDAD  TRE+Y++NLGL+       PDD     R  F + +      P G G+             AR  +           ++ + +++VLRF+C ++D Q + GD+R YVL+Y+L +DTVE+ E+     GR  FP  +RR  LP+ +       G T  P+  + E    V ++
Sbjct:   55 GTGSPAATMSAGAGTGTYSPSRNTGFDSPNKLPQWVENDRKVLRFYGYFKESVVES---NIENHRIRKVILYYYLEDDSMHVAEPRQDNSGIPQGVFIKRHKLTKDDGV--SFFSPVDFNVGQEVTIYGRTFFLVDADTFTREFYKDNLGLDMSGPLPYPDDPVDAYRATFGLTRG-----PKGVGTTTQRMDDFKSYIEARLGKPSHLLDGDRLRQFLENNKRVLRFWCIWDDRQSMYGDRRPYVLHYFLEDDTVEILEINENNSGRDPFPVFMRRSPLPKTAQRT----GYTTGPKYKKNECYAPVDFR 351          
BLAST of jgi.p|Trimin1|162124 vs. uniprot
Match: A0A7S0DAJ5_9EUKA (Hypothetical protein n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0DAJ5_9EUKA)

HSP 1 Score: 149 bits (376), Expect = 1.060e-36
Identity = 95/258 (36.82%), Postives = 136/258 (52.71%), Query Frame = 1
Query:  205 VPSYITKEGQVLRFRAYFQEPVYEGGSVDAAGFRVRVFAVNYHLSDETMAIEEPRVQNSGLTQGKFMKRTKVERPRGVGGGVYQPADFCVGEEIWVYGRRFRIVDADARTREWYRENLGLEQGPAEDVPDDGYARERQ-------RFEVPKQTEAGLPLGTGSGVAAGGAVTGGAAARAVRREKGEYFKKDRKVLRFFCRYEDQRLQGDKRDYVLYYYLLNDTVEVKEVAAE--GRHNFPNLLRRQKLPRDSLHVPTS 951
            VP ++  + +VLRF  YF+E V   GS  A  +R+R+    Y+L D+TM I EPR  NSG+TQG F+KR ++E+P G   G Y   D  VG  I VYG+ F++ D D  TR++Y E L   Q  AE  P+D + +  +       +   P +      LG                 + +      + + DRKVLRFFCR++D  + G+   Y+L YYL + TVEV  +  +  GR  FP LL+RQKLP+ +  V  S
Sbjct:   76 VPVWVAYDRKVLRFFGYFKETV--DGS-PAEHYRIRICVFFYYLEDDTMHIAEPRQTNSGITQGYFVKRHRLEKPGGK--GYYVEQDLKVGMSIEVYGKVFKLYDCDDSTRKFYAEELKTPQPKAEVCPEDNFGKSHKVIKKAANKMMNPVKLFMEARLG-----------------KFIHHNTKSFLENDRKVLRFFCRWDDTSVYGETNLYILNYYLADATVEVLMIKEQNSGRDPFPALLKRQKLPKSTFEVTPS 311          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|162124 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z5Q7_9STRA9.870e-254100.00Ef-hand domain-containing protein n=1 Tax=Tribonem... [more]
D8LFP6_ECTSI1.300e-11250.95Ef-hand domain (C-terminal) containing protein n=1... [more]
A0A6H5JPJ7_9PHAE2.960e-10154.13Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A7S1UHB1_9STRA3.120e-5134.42Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A250XRR2_9CHLO3.910e-3934.88Uncharacterized protein n=1 Tax=Chlamydomonas eust... [more]
A0A0D2JH69_9CHLO2.290e-3838.40EF-hand domain-containing protein 1 n=1 Tax=Monora... [more]
F2UH95_SALR52.400e-3734.72EFHC1 protein n=1 Tax=Salpingoeca rosetta (strain ... [more]
A0A7J7PZC6_9CHLO4.760e-3735.20Uncharacterized protein n=2 Tax=Scenedesmaceae Tax... [more]
A0A7S0S6H3_9CHLO4.860e-3733.12Hypothetical protein n=1 Tax=Chlamydomonas leiostr... [more]
A0A7S0DAJ5_9EUKA1.060e-3636.82Hypothetical protein n=1 Tax=Amorphochlora amoebif... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_19contigContig_19:1229223..1231770 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|162124|e_gw1.19.164.1
BRITEko00000,ko00001,ko00002,ko03041
KEGG ModuleM00354
KEGG Pathwayko03040,map03040
KEGG koko:K12847
Descriptionalpha-tubulin binding
COG categoryS
Max annot lvl2759|Eukaryota
EggNOG OGsKOG0043@1|root,KOG0043@2759|Eukaryota
Evalue2.14e-113
Seed ortholog2880.D8LFP6
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionUncharacterised domain DM10
Ec32 orthologEc-01_001420.1
TranscriptId162446
TrackFilteredModels1
ProteinId162124
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|162124gene_5584Tribonema minus UTEX_B_3156 geneContig_19 1229223..1231770 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|162124Trimin1|162124|e_gw1.19.164.1Tribonema minus UTEX_B_3156 polypeptideContig_19 1229223..1231770 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_5584_4exon_5584_4Tribonema minus UTEX_B_3156 exonContig_19 1229223..1229494 -
exon_5584_3exon_5584_3Tribonema minus UTEX_B_3156 exonContig_19 1230413..1230596 -
exon_5584_2exon_5584_2Tribonema minus UTEX_B_3156 exonContig_19 1231114..1231602 -
exon_5584_1exon_5584_1Tribonema minus UTEX_B_3156 exonContig_19 1231690..1231770 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_5584CDS_5584Tribonema minus UTEX_B_3156 CDSContig_19 1231690..1231770 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_5584 ID=mRNA_5584|Name=jgi.p|Trimin1|162124|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1026bp|location=Sequence derived from alignment at Contig_19:1229223..1231770- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGTACGCTAGTCATGGCTCTTTACCGGACCTCCCAATGGTTCCAGGAAT
ATACAGGGCTCCAAATGGCTATTTGAAAAGCTGCACAGGGCAAGGGCTCG
GAGGCAGCGGCATGAGTTGCGCGGGGTCGGTAGCGCCTCGGTCTACGGTG
GGCCCCCGCCCTGGCACAGCCTTGGGCACGCATCATGGAGTGAACAGCAA
GAAAGTGCCCTCCTACATCACCAAGGAGGGCCAGGTCCTGAGGTTCCGGG
CCTACTTCCAGGAGCCGGTGTACGAGGGGGGCAGCGTGGACGCGGCGGGG
TTCAGGGTGCGCGTCTTCGCCGTCAACTACCACCTCTCCGACGAGACCAT
GGCCATCGAGGAGCCCAGGGTGCAGAACAGCGGGCTCACCCAGGGCAAGT
TTATGAAGCGAACCAAGGTGGAGCGTCCGCGCGGGGTGGGGGGCGGGGTG
TACCAGCCAGCGGACTTCTGCGTCGGGGAGGAGATCTGGGTGTACGGGCG
GCGCTTCCGCATCGTCGACGCAGACGCGCGGACGCGCGAGTGGTACAGGG
AGAACCTAGGGCTGGAACAGGGGCCAGCGGAGGACGTGCCTGATGACGGC
TACGCACGTGAGCGACAGCGCTTCGAGGTGCCCAAGCAGACGGAAGCGGG
GCTGCCGCTGGGGACGGGCAGCGGCGTCGCAGCGGGGGGCGCGGTGACGG
GGGGCGCGGCGGCGCGCGCGGTGCGCAGAGAGAAGGGCGAATACTTCAAG
AAGGACCGCAAGGTCCTGCGCTTCTTCTGCCGCTACGAGGACCAGCGCCT
GCAGGGCGACAAGCGCGACTACGTCCTGTACTACTACCTCCTCAACGACA
CGGTCGAGGTGAAGGAAGTCGCGGCGGAGGGGCGCCACAACTTCCCCAAC
CTGCTGCGCCGGCAGAAGCTGCCGCGCGACTCGCTGCACGTGCCGACGAG
CTACGGCGGCACCGTGAGTCCGCGCGACGGCGAGCGCGAGCCGATGCGCG
CCGTCACGTGGCAGGACCTCAAGTGA
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protein sequence of jgi.p|Trimin1|162124

>Trimin1|162124|e_gw1.19.164.1 ID=Trimin1|162124|e_gw1.19.164.1|Name=jgi.p|Trimin1|162124|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=342bp
MYASHGSLPDLPMVPGIYRAPNGYLKSCTGQGLGGSGMSCAGSVAPRSTV
GPRPGTALGTHHGVNSKKVPSYITKEGQVLRFRAYFQEPVYEGGSVDAAG
FRVRVFAVNYHLSDETMAIEEPRVQNSGLTQGKFMKRTKVERPRGVGGGV
YQPADFCVGEEIWVYGRRFRIVDADARTREWYRENLGLEQGPAEDVPDDG
YARERQRFEVPKQTEAGLPLGTGSGVAAGGAVTGGAAARAVRREKGEYFK
KDRKVLRFFCRYEDQRLQGDKRDYVLYYYLLNDTVEVKEVAAEGRHNFPN
LLRRQKLPRDSLHVPTSYGGTVSPRDGEREPMRAVTWQDLK*
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mRNA from alignment at Contig_19:1229223..1231770-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5584 ID=mRNA_5584|Name=jgi.p|Trimin1|162124|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2548bp|location=Sequence derived from alignment at Contig_19:1229223..1231770- (Tribonema minus UTEX_B_3156 )
ATGTACGCTAGTCATGGCTCTTTACCGGACCTCCCAATGGTTCCAGGAAT ATACAGGGCTCCAAATGGCTATTTGAAAAGCGTATACGCACACAGAGCCA GGCCGGAGTCGGCGCCCTCCATGCGAGCCGTACCCACGGCGGCGGCATCG GCGGCGTCATTGATGCAGTGCACAGGGCAAGGGCTCGGAGGCAGCGGCAT GAGTTGCGCGGGGTCGGTAGCGCCTCGGTCTACGGTGGGCCCCCGCCCTG GCACAGCCTTGGGCACGCATCATGGAGTGAACAGCAAGAAAGTGCCCTCC TACATCACCAAGGAGGGCCAGGTCCTGAGGTTCCGGGCCTACTTCCAGGA GCCGGTGTACGAGGGGGGCAGCGTGGACGCGGCGGGGTTCAGGGTGCGCG TCTTCGCCGTCAACTACCACCTCTCCGACGAGACCATGGCCATCGAGGAG CCCAGGGTGCAGAACAGCGGGCTCACCCAGGGCAAGTTTATGAAGCGAAC CAAGGTGGAGCGTCCGCGCGGGGTGGGGGGCGGGGTGTACCAGCCAGCGG ACTTCTGCGTCGGGGAGGAGATCTGGGTGTACGGGCGGCGCTTCCGCATC GTCGACGCAGACGCGCGGACGCGCGAGTGGTACAGGGAGAACCTAGGGCT GGAACAGGTGAGAGATTGCGCCGGGGCTTGCGGTGACAGCGCGTTTGGTG CTCATGACACTCGCTTGGCAGCGCCAGCTGGCTCTGCATGTGTATGCTCT AGAGAAGGCACATGCTTTGAGATGCTCGTCAATTGCATCCGGGGCAGGCG GAAATGGAAACAGCACACGAACTCGCCTGGCAGCATTGCTTTGCTCTTCA CATTCATCAGTAGGTTTTGCACAGCATGCACAAGTACCATAGGCAGCTAC ACAAGTTTAATCTTTAGCTGCGAATGTCCAAATAACGCACGAACCTACGT TCAAAGTGCCAGAGCACTTCTCAGGTGTTGCCTTACGCCCTTGAAGCATC TGTGGTGCTGGGCGCTTCTCCGCGCGCACAGATGTCCTTCTCATTCTATG GCGATGGCATCCTGGAGCCTGCCCAGACAGCATGGCCTCGAGGCAACCCA CTCGCACAGGCTCTAACCCAGAGCAAAATAGGTTGTTACCCGTTTTCTTC CAATATTCCCAATGAACCACGCAGGGGCCAGCGGAGGACGTGCCTGATGA CGGCTACGCACGTGAGCGACAGCGCTTCGAGGTGCCCAAGCAGACGGAAG CGGGGCTGCCGCTGGGGACGGGCAGCGGCGTCGCAGCGGGGGGCGCGGTG ACGGGGGGCGCGGCGGCGCGCGCGGTGCGCAGAGAGAAGGGCGAATACTT CAAGAAGGGTGAGCAGGGGATGAGCGCGCTTGCACGCCAAGGGCAGCTGA TTCATAGTATACCATGGGCTCGTGATGGTGACGAAGCAGCGGGGTGGGTC TCTACAGGGAGTACGAGCCACCGTGCAGTGTTGAGTGTCTCAGTAGCAAT GAAAACAGTGCTGCTGGTACGTTTTTCCGATGCGCACTATCCTCTGCGAT GTGTGCATGCGTGGCGGTGCGCGGCTCACATCATGATCATGAGCATGAGT CACATGTGTTCCCTGGGATGCCGAACTGTGGAGCAGGGATCTTGACTCAC ACAGCTCACACAGTGGCGCCATTCATAGAGAAGTTGAAGTTCAGCACATC ATGCGCCAGAGACGACGGTGCTGACAGTGCACATGGTCTGACCGCGCTCT GAAAGAAGTCTGCCTGGTTCCGCAAGCGCCCCTTCTTGGGGATTCAGCGC ATTGCGCTGCAAATCCTGTTGCGTGGTGCCTCCGCCTCTAACTGGACCGT CACCGGCGGATGGTGCAGTGGCATTGTGAAATGGTGTAGAACGCTGCGCG CCACACCCTGCAACAAACAGTCCAACAAGAGTATCTGAATGACATTGCAT CGTCTGGGGCTACTACTAGTACCAACAACAAAGTCAGTGCCAAGTCAAGC TACGTGACAGCAAAGCACCAATCTGGACAAGAACATGTTAATTCAGTTTC TTCGTGCATGCATCTGCCATGTAGCTTGCTGCGGAGACCGCAATTTGAAG CGCATGGTTCGCCACCGCTAGCACCAGCAGTTGTGGGGGGTGACTCTCCT GCTGCACTTCCCTGTCGCTCACACGTCCACCTTGCCGCATGCACCCGAGC ACATGTGCTGCCACCAGCCTCCGTATGCATATGTACTTACCCGTTCCCCC CCCCCGCACGCACGCGCTTTACGCAGACCGCAAGGTCCTGCGCTTCTTCT GCCGCTACGAGGACCAGCGCCTGCAGGGCGACAAGCGCGACTACGTCCTG TACTACTACCTCCTCAACGACACGGTCGAGGTGAAGGAAGTCGCGGCGGA GGGGCGCCACAACTTCCCCAACCTGCTGCGCCGGCAGAAGCTGCCGCGCG ACTCGCTGCACGTGCCGACGAGCTACGGCGGCACCGTGAGTCCGCGCGAC GGCGAGCGCGAGCCGATGCGCGCCGTCACGTGGCAGGACCTCAAGTGA
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Coding sequence (CDS) from alignment at Contig_19:1229223..1231770-

>mRNA_5584 ID=mRNA_5584|Name=jgi.p|Trimin1|162124|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1026bp|location=Sequence derived from alignment at Contig_19:1229223..1231770- (Tribonema minus UTEX_B_3156 )
ATGTACGCTAGTCATGGCTCTTTACCGGACCTCCCAATGGTTCCAGGAAT
ATACAGGGCTCCAAATGGCTATTTGAAAAGCTGCACAGGGCAAGGGCTCG
GAGGCAGCGGCATGAGTTGCGCGGGGTCGGTAGCGCCTCGGTCTACGGTG
GGCCCCCGCCCTGGCACAGCCTTGGGCACGCATCATGGAGTGAACAGCAA
GAAAGTGCCCTCCTACATCACCAAGGAGGGCCAGGTCCTGAGGTTCCGGG
CCTACTTCCAGGAGCCGGTGTACGAGGGGGGCAGCGTGGACGCGGCGGGG
TTCAGGGTGCGCGTCTTCGCCGTCAACTACCACCTCTCCGACGAGACCAT
GGCCATCGAGGAGCCCAGGGTGCAGAACAGCGGGCTCACCCAGGGCAAGT
TTATGAAGCGAACCAAGGTGGAGCGTCCGCGCGGGGTGGGGGGCGGGGTG
TACCAGCCAGCGGACTTCTGCGTCGGGGAGGAGATCTGGGTGTACGGGCG
GCGCTTCCGCATCGTCGACGCAGACGCGCGGACGCGCGAGTGGTACAGGG
AGAACCTAGGGCTGGAACAGGGGCCAGCGGAGGACGTGCCTGATGACGGC
TACGCACGTGAGCGACAGCGCTTCGAGGTGCCCAAGCAGACGGAAGCGGG
GCTGCCGCTGGGGACGGGCAGCGGCGTCGCAGCGGGGGGCGCGGTGACGG
GGGGCGCGGCGGCGCGCGCGGTGCGCAGAGAGAAGGGCGAATACTTCAAG
AAGGACCGCAAGGTCCTGCGCTTCTTCTGCCGCTACGAGGACCAGCGCCT
GCAGGGCGACAAGCGCGACTACGTCCTGTACTACTACCTCCTCAACGACA
CGGTCGAGGTGAAGGAAGTCGCGGCGGAGGGGCGCCACAACTTCCCCAAC
CTGCTGCGCCGGCAGAAGCTGCCGCGCGACTCGCTGCACGTGCCGACGAG
CTACGGCGGCACCGTGAGTCCGCGCGACGGCGAGCGCGAGCCGATGCGCG
CCGTCACGTGGCAGGACCTCAAGTGA
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