mRNA_5547 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|146139 vs. uniprot
Match: A0A836CIM8_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIM8_9STRA) HSP 1 Score: 444 bits (1142), Expect = 5.590e-157 Identity = 245/245 (100.00%), Postives = 245/245 (100.00%), Query Frame = 1 Query: 1 TVASVSDAGDAITFKSAPSCPGSAAGTGKAVSLVLSDAVQVTRRGTGDSIMEVQRITISATAPIVPSSSLAQGFFQIVWQHDGATAVTRCIEYGASAADVQAAIDAAVLRAVADATGAVSGMDLNQNNGVTAASDAGHIQVTMEGDGSAAWGYGYVYTLTFRGQPGVSTVLGNVGQVRVAALGAAGACEDVGSQETVLTGATASTTNGSAVLTVNAAAVAALRPGDRIRLSGSTPASRIYTVTSV 735 TVASVSDAGDAITFKSAPSCPGSAAGTGKAVSLVLSDAVQVTRRGTGDSIMEVQRITISATAPIVPSSSLAQGFFQIVWQHDGATAVTRCIEYGASAADVQAAIDAAVLRAVADATGAVSGMDLNQNNGVTAASDAGHIQVTMEGDGSAAWGYGYVYTLTFRGQPGVSTVLGNVGQVRVAALGAAGACEDVGSQETVLTGATASTTNGSAVLTVNAAAVAALRPGDRIRLSGSTPASRIYTVTSV Sbjct: 1 TVASVSDAGDAITFKSAPSCPGSAAGTGKAVSLVLSDAVQVTRRGTGDSIMEVQRITISATAPIVPSSSLAQGFFQIVWQHDGATAVTRCIEYGASAADVQAAIDAAVLRAVADATGAVSGMDLNQNNGVTAASDAGHIQVTMEGDGSAAWGYGYVYTLTFRGQPGVSTVLGNVGQVRVAALGAAGACEDVGSQETVLTGATASTTNGSAVLTVNAAAVAALRPGDRIRLSGSTPASRIYTVTSV 245
BLAST of jgi.p|Trimin1|146139 vs. uniprot
Match: A0A7S3XKT4_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XKT4_HETAK) HSP 1 Score: 128 bits (322), Expect = 3.460e-30 Identity = 89/246 (36.18%), Postives = 137/246 (55.69%), Query Frame = 1 Query: 1 TVASVSDAGDAITFKSAPSCPGSAAGTGKAVSLVLSDAVQVTRRGTGDSIMEVQRITISATAPIVPSSSLAQGFFQIVWQHDGATAV-TRCIEYGASAADVQAAIDAAVLRAVADATGAVSGMDLNQNNGVTAASDAGHIQVTMEGDGSAAWGYGYVYTLTFRGQPGVSTVLGNVGQVRVAALGAAGACEDVGSQETVLTGATASTTNGSAVLTVNAAAVAALRPGDRIRLSGSTPASRIYTVTSV 735 T+ S+S +G +TF AG GKAV+ +L D + V R G G+S+ EVQ +TI ++ + P+ A G+F++ W H G+ V T C+ GASA VQ A++A G D N++ GV +D HI VT +GDGSA +G F G+ G+S+VLG++ ++ V A+G+A C DV +ET+L A+ +TT+ S + + + + PGD +R+ GS ++YTV V Sbjct: 465 TIQSISQSGRLLTFTEVFYASSGMAGEGKAVTKILQDPILVQREGHGESVPEVQTLTIRSSGELSPND--AGGYFKLGWTHSGSELVATECLALGASADQVQDALNAL-------------GFDFNED-GVVDGNDEDHISVTRKGDGSAEYGXXXXXXXXFGGKAGISSVLGDIAELEVVAIGSAQGCYDVAGEETLLD-ASVNTTDSSYQVHGSTSMHGVVHPGDLVRIQGSRNPEQLYTVVRV 693
BLAST of jgi.p|Trimin1|146139 vs. uniprot
Match: A0A7S2WQR5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WQR5_9STRA) HSP 1 Score: 95.1 bits (235), Expect = 1.450e-19 Identity = 82/260 (31.54%), Postives = 129/260 (49.62%), Query Frame = 1 Query: 1 TVASVSDAGDAITFKSAPSCPGSAAGTGKAVSLVLSDAVQVTRRGTGDSIMEVQRITISATAPIVPSSSLAQGFFQIVWQH-DGATA----------VTRCIEYGASAADVQAAIDAAVLRAVADATGAVSGMDLNQNNGVTAASDAGHIQVTMEGDGSAAWGYGYVYTLTFRGQP---GVSTVLGNVGQVRVAALGAAGACEDVGSQETVLTGATASTT--NGSAVLTVNAAAVAA--LRPGDRIRLSGSTPASRIYTV 726 TVA+VS G + K +V+ V++ QV R G G + EVQR+ ++A A V S+ +G +++ W+H A+A V+ CI Y A+A +VQ+ ++ G+D +G+ D HI V+ G G G+GY Y+L FRG+P GVS+ LG+V QV+V +G++G C D L T +TT +G L N+ + +RPGD +R++GS ++YT+ Sbjct: 49 TVAAVSTEGTGVELKEMFFARDGRTSAYASVAKVIAGPAQVRRHGDGFGVSEVQRLVVTANAT-VGSTGHTEGLYRLRWRHLQPASAASNRKVLKEFVSACIPYHATAGEVQSVLNG-------------WGVDFT-GDGIVDYEDEDHITVSRSGAGGPEDGFGYTYSLEFRGRPFYRGVSSALGHVDQVQVVVVGSSGGCTDAPPALETLLSVTVNTTLSDGQRTLPANSGVSLSGKVRPGDLLRVAGSNDEHQLYTI 293
BLAST of jgi.p|Trimin1|146139 vs. uniprot
Match: A0A6G0XYE9_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XYE9_9STRA) HSP 1 Score: 91.3 bits (225), Expect = 3.040e-17 Identity = 58/156 (37.18%), Postives = 88/156 (56.41%), Query Frame = 1 Query: 88 AVSLVLSDAVQVTRRGTGDSIMEVQRITISATAPIVPSSSLAQGFFQIVWQHDGATAVTRCIEYGASAADVQAAIDAAVLRAVADATGAVSGMDLNQNNGVTAASDAGHIQVTMEGDGSAAWGYGYVYTLTFRG--QPGVSTVLGNVGQVRVAALG 549 A++ VL D V V+R G G S+ E+Q+I +++ AP+V A G F++ + ++G TA T C+ YG SA +Q A+++ V+ GH+ V+ GDG+A+WGYGYVY + F G Q G+S VLGNV Q+ V ++G Sbjct: 4412 ALNAVLPDNVIVSRHGKGVSVTEMQQIVLTSNAPVVNG---ANGLFRLAYTNNGVTATTACLNYGLSATALQTALNSIGPSVVS----------------------TGHVAVSRMGDGTASWGYGYVYQIAFSGNLQVGLSNVLGNVAQLVVFSVG 4542
BLAST of jgi.p|Trimin1|146139 vs. uniprot
Match: A0A6A4XYM7_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A6A4XYM7_9STRA) HSP 1 Score: 90.1 bits (222), Expect = 6.060e-17 Identity = 56/152 (36.84%), Postives = 84/152 (55.26%), Query Frame = 1 Query: 100 VLSDAVQVTRRGTGDSIMEVQRITISATAPIVPSSSLAQGFFQIVWQHDGATAVTRCIEYGASAADVQAAIDAAVLRAVADATGAVSGMDLNQNNGVTAASDAGHIQVTMEGDGSAAWGYGYVYTLTFRGQ--PGVSTVLGNVGQVRVAALG 549 V D V V+ G+G S+ E+Q++ +++ P VP A G FQ+ +++ G T T C+ +G +AAD+Q A+++ N N+G H+ VT GDG+AAWGYGYVY + F G G+S VLGNV Q+ V ++G Sbjct: 4 VFPDTVVVSVHGSGASVTEIQQLVLTSNLPTVPG---ATGLFQLAFRNQGVTTTTPCLAFGIAAADLQTALNSLA----------------NVNSG--------HVVVTRTGDGTAAWGYGYVYQIAFSGNLHVGLSNVLGNVNQLVVFSVG 128
BLAST of jgi.p|Trimin1|146139 vs. uniprot
Match: A0A7S2PKA6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2PKA6_9STRA) HSP 1 Score: 90.1 bits (222), Expect = 6.980e-17 Identity = 66/205 (32.20%), Postives = 106/205 (51.71%), Query Frame = 1 Query: 133 GTGDSIMEVQRITISATAPIVPSSSLAQGFFQIVWQHDGATAVTRCIEYGASAADVQAAIDAAVLRAVADATGAVSGMDLNQNNGVTAASDAGHIQVTMEGDGSAAWGYGYVYTLTFRGQP---GVSTVLG-NVGQVRVAALGAAGACEDVGSQETVLTGATASTTNGSAVLTVNAAAVAALRPGDRIRLSGSTPASRIYTVTSV 735 G ++ ++ +T+ + P++ ++SL +++ D + T C+ YG A+ VQ ID S D NQ+ GV + D+GHI VT GDGSA WGYGYVY +G G S VLG N + V +G+AG C D E + ++ ST +G++ + + +L PG+RI++ S+ +RIY V ++ Sbjct: 912 GQQTAVSQIASVTLFSDRPVLTNASL----YKLQLTIDRVSMNTSCLHYGVDASTVQTEID--------------SLFDYNQD-GVIDSMDSGHIHVTRHGDGSATWGYGYVYDFESKGSSMYAGASIVLGTNAPTIEVVNIGSAGGCSDASGIEDTID-SSVSTVDGNSQIIFPSTVSGSLHPGNRIKIDASSDPNRIYFVDNI 1096
BLAST of jgi.p|Trimin1|146139 vs. uniprot
Match: A0A5D6XPZ3_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XPZ3_9STRA) HSP 1 Score: 88.6 bits (218), Expect = 2.550e-16 Identity = 66/185 (35.68%), Postives = 101/185 (54.59%), Query Frame = 1 Query: 85 KAVSLVLSDAVQVTRRGTGDSIMEVQRITISATAPIVPSSSLAQGFFQIVWQHDGATAVTRCIEYGASAADVQAAIDAAVLRAVADATGAVSGMDLNQNNGVT-AASDAGHIQVTMEGDGSAAWGYGYVYTLTFRGQPG--VSTVLGNVGQVRVAALGAAGACEDVGSQ-----ETVLTGATAST 615 K +++L+ V V+RRG+G+S+ EVQR+ +++ + + +++ G FQ+++ DG TA T C+ YG SA D+Q AI NG++ A+ H+ VT +GDGS+AWGYGY Y + FRG S VLG+V Q+++ +G + VG ETV GA A T Sbjct: 4330 KLETVLLTGDVLVSRRGSGNSVTEVQRLRLTSNSEVTTTNT---GLFQLLFMIDGKTAATGCLAYGVSAEDLQLAI-----------------------NGMSNLAAAVHHVNVTRDGDGSSAWGYGYEYLINFRGPVAGSYSPVLGDVEQLQIINVGKSPCAPVVGGNPALILETVRQGAAAYT 4488
BLAST of jgi.p|Trimin1|146139 vs. uniprot
Match: K0RCQ5_THAOC (Uncharacterized protein (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RCQ5_THAOC) HSP 1 Score: 87.4 bits (215), Expect = 6.250e-16 Identity = 74/199 (37.19%), Postives = 102/199 (51.26%), Query Frame = 1 Query: 139 GDSIMEVQRITISATAPIVPSSSLAQGFFQIVWQHDGATAVTRCIEYGASAADVQAAIDAAVLRAVADATGAVSGMDLNQNNGVTAASDAGHIQVTMEGDGSAAWGYGYVYTLTFRGQP---GVSTVLGNVGQVRVAALGAAGACEDVGSQETVLTGATASTTNGSAVLTVNAAAVAALRPGDRIRLSGSTPASRIYTV 726 G S+ +T + P+ SS A ++I Q G T T CI+YGASA VQA I S D NQ++ + SD HI VT GDG+A+ G+GY Y G G S VLG+ + GA G C D G++ +++T +TASTT+ S ++T+ A + L GDR+R S S S+IYTV Sbjct: 2924 GWSVSGKTSLTTYSNEPVAAESSKA--LYRIGVQFQGVTRHTACIDYGASAGQVQAEIG--------------SLFDFNQDSAIDF-SDEDHITVTRRGDGTASSGFGYTYEFESNGSQTTIGPSAVLGSSAPEFSVSFGAEGGCSDYGTEASLIT-STASTTDESNIVTL--AESSGLLAGDRVRASSSFDLSKIYTV 3102
BLAST of jgi.p|Trimin1|146139 vs. uniprot
Match: F0YRU7_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YRU7_AURAN) HSP 1 Score: 85.5 bits (210), Expect = 2.360e-15 Identity = 71/219 (32.42%), Postives = 105/219 (47.95%), Query Frame = 1 Query: 103 LSDAVQVTRRGTGDSIMEVQRITISATAPIVPSSSLAQGFFQIVWQHDGATAVTRCIEYGASAADVQAAIDAAVLRAVADATGAVSGMDLNQNNGVTAASDAGHIQVTMEGDGSAAWGYGYVYTLTFRGQPG----------VSTVLG-NVGQVRVAALGAAGACEDVGSQETVLTGATASTTNGSAVLTVNAAAVAALRPGDRIRLSGSTPASRIYTV 726 ++DAV V + G G++ + + + A A SS +G F++ HDG T CI+Y A+A +VQ A D+ + DLN + V D H+ VT GDG A G+GY Y G S++LG N ++ V A+G+ C+D E L ATA+T + S + ++A A + PGDRIR+ S+ IYTV Sbjct: 191 VADAVTVKKGGIGNATVAKTVVQVVADAQFYASSENTKGLFKLQVTHDGEVKQTSCIDYAATAEEVQTAFDSLLF-------------DLNADGLVN---DENHVTVTRSGDGGVASGHGYEYLFEMTGPDNNRDAYGYGGATSSILGSNAPKIEVVAVGSEFGCQDALGPEEKLD-ATATTKHNSTRVELSANAALYVAPGDRIRIGDSSDPFMIYTV 392
BLAST of jgi.p|Trimin1|146139 vs. uniprot
Match: A0A067CX28_SAPPC (Uncharacterized protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067CX28_SAPPC) HSP 1 Score: 82.8 bits (203), Expect = 2.380e-14 Identity = 58/157 (36.94%), Postives = 86/157 (54.78%), Query Frame = 1 Query: 109 DAVQVTRRGTGDSIMEVQRITISATAPIVPSSSLAQGFFQIVWQHDGATAVTRCIEYGASAADVQAAIDAAVLRAVADATGAVSGMDLNQNNGVTAASDAGHIQVTMEGDGSAAWGYGYVYTLTFRG--QPGVSTVLGNVGQVRVAALGAAGACEDV 573 D V V+ G+G S E+Q++ +++ AP+V A G+F++ ++GATA T C+ YG SA +Q A+ NG++ +GHI VT GDGSAA GYG+ YT+ + G + G+S VLGNV + V ++G GAC V Sbjct: 4316 DTVLVSAHGSGTSTTELQQLVLASNAPVVNG---ANGYFRLALTNNGATATTSCLNYGLSATALQTAL-----------------------NGLSNVM-SGHIVVTSSGDGSAASGYGFQYTIAYNGNLRVGLSNVLGNVAPLVVFSMGT-GACSPV 4444 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|146139 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 17
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_5547 ID=mRNA_5547|Name=jgi.p|Trimin1|146139|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=735bp|location=Sequence derived from alignment at Contig_19:981022..981756+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ACAGTGGCCTCTGTGTCGGACGCCGGCGATGCCATCACCTTCAAGTCTGCback to top protein sequence of jgi.p|Trimin1|146139 >Trimin1|146139|gw1.19.124.1 ID=Trimin1|146139|gw1.19.124.1|Name=jgi.p|Trimin1|146139|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=245bp TVASVSDAGDAITFKSAPSCPGSAAGTGKAVSLVLSDAVQVTRRGTGDSIback to top mRNA from alignment at Contig_19:981022..981756+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_5547 ID=mRNA_5547|Name=jgi.p|Trimin1|146139|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=735bp|location=Sequence derived from alignment at Contig_19:981022..981756+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_19:981022..981756+ >mRNA_5547 ID=mRNA_5547|Name=jgi.p|Trimin1|146139|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=735bp|location=Sequence derived from alignment at Contig_19:981022..981756+ (Tribonema minus UTEX_B_3156 )back to top |