mRNA_5535 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|35501
Unique NamemRNA_5535
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|35501 vs. uniprot
Match: A0A836CI56_9STRA (AP2/ERF domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CI56_9STRA)

HSP 1 Score: 407 bits (1045), Expect = 4.540e-142
Identity = 205/205 (100.00%), Postives = 205/205 (100.00%), Query Frame = 3 
Query:   99 MSPLASASSPIKGGPRNPTARRRGRKGKSIYRGVCVTREGKWRAVIYKERKQLYLGVFESEIDAAKAHDRAARYHFGAQAMVNFLEPTDPEYMQHIPPPQEPEDEESTAHLGGTISPVSSTAKLARSAVKVEGKFAPLLPSLMDFAFPFDDSSEDDLNSAHDLGAFDMSEDVGDFPLLDGGHEPFGASLSFLGTADELAADLCTA 713
            MSPLASASSPIKGGPRNPTARRRGRKGKSIYRGVCVTREGKWRAVIYKERKQLYLGVFESEIDAAKAHDRAARYHFGAQAMVNFLEPTDPEYMQHIPPPQEPEDEESTAHLGGTISPVSSTAKLARSAVKVEGKFAPLLPSLMDFAFPFDDSSEDDLNSAHDLGAFDMSEDVGDFPLLDGGHEPFGASLSFLGTADELAADLCTA
Sbjct:    1 MSPLASASSPIKGGPRNPTARRRGRKGKSIYRGVCVTREGKWRAVIYKERKQLYLGVFESEIDAAKAHDRAARYHFGAQAMVNFLEPTDPEYMQHIPPPQEPEDEESTAHLGGTISPVSSTAKLARSAVKVEGKFAPLLPSLMDFAFPFDDSSEDDLNSAHDLGAFDMSEDVGDFPLLDGGHEPFGASLSFLGTADELAADLCTA 205
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BLAST of jgi.p|Trimin1|35501 vs. uniprot
Match: A0A836CH07_9STRA (AP2/ERF domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CH07_9STRA)

HSP 1 Score: 110 bits (274), Expect = 2.110e-27
Identity = 51/54 (94.44%), Postives = 52/54 (96.30%), Query Frame = 3 
Query:  189 YRGVCVTREGKWRAVIYKERKQLYLGVFESEIDAAKAHDRAARYHFGAQAMVNF 350
            YRGVCVTREGKWRAVIYKERKQLYLGVFESE+DAAKAHDRAAR HFG QAMVNF
Sbjct:    1 YRGVCVTREGKWRAVIYKERKQLYLGVFESEVDAAKAHDRAARQHFGDQAMVNF 54
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BLAST of jgi.p|Trimin1|35501 vs. uniprot
Match: A0A6H5JUY3_9PHAE (AP2 protein ( ERFprotein ) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUY3_9PHAE)

HSP 1 Score: 119 bits (297), Expect = 1.270e-26
Identity = 55/66 (83.33%), Postives = 61/66 (92.42%), Query Frame = 3 
Query:  153 TARRRGRKGKSIYRGVCVTREGKWRAVIYKERKQLYLGVFESEIDAAKAHDRAARYHFGAQAMVNF 350
            T RRRGR+GKS+YRGVCVTREGKWRAVIYKERKQLYLGV+ESE+DAAKAHDRAAR+HF   A+ NF
Sbjct:   95 THRRRGRRGKSVYRGVCVTREGKWRAVIYKERKQLYLGVYESEVDAAKAHDRAARFHFADSAVCNF 160
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BLAST of jgi.p|Trimin1|35501 vs. uniprot
Match: D7FZ71_ECTSI (AP2/ERF domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ71_ECTSI)

HSP 1 Score: 116 bits (291), Expect = 1.370e-25
Identity = 54/64 (84.38%), Postives = 61/64 (95.31%), Query Frame = 3 
Query:  159 RRRGRKGKSIYRGVCVTREGKWRAVIYKERKQLYLGVFESEIDAAKAHDRAARYHFGAQAMVNF 350
            RRRGRKG+SIYRGVCVTREGKWRAVIYKERKQLYLGV+ESE++AAKAHDRAAR+HF  ++M NF
Sbjct:  133 RRRGRKGRSIYRGVCVTREGKWRAVIYKERKQLYLGVYESELEAAKAHDRAARFHFPDKSMTNF 196
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BLAST of jgi.p|Trimin1|35501 vs. uniprot
Match: A0A6H5LCQ5_9PHAE (AP2 protein ( ERFprotein ) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LCQ5_9PHAE)

HSP 1 Score: 116 bits (291), Expect = 1.580e-25
Identity = 54/64 (84.38%), Postives = 61/64 (95.31%), Query Frame = 3 
Query:  159 RRRGRKGKSIYRGVCVTREGKWRAVIYKERKQLYLGVFESEIDAAKAHDRAARYHFGAQAMVNF 350
            RRRGRKG+SIYRGVCVTREGKWRAVIYKERKQLYLGV+ESE++AAKAHDRAAR+HF  ++M NF
Sbjct:  120 RRRGRKGRSIYRGVCVTREGKWRAVIYKERKQLYLGVYESELEAAKAHDRAARFHFPDKSMTNF 183
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BLAST of jgi.p|Trimin1|35501 vs. uniprot
Match: A0A6V1UZI2_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1UZI2_HETAK)

HSP 1 Score: 88.2 bits (217), Expect = 7.900e-17
Identity = 53/103 (51.46%), Postives = 70/103 (67.96%), Query Frame = 3 
Query:   54 LSPFSFLEGDALAAPMSP-LASASSPIKGG---PRNPTARRRGRKGKSIYRGVCVTREGKWRAVIYKERKQLYLGVFESEIDAAKAHDRAARYHFGAQAMVNF 350
            L+P   +    LA+P +  L S  SP K     PR  +A RRG +G+S ++GVCVTR GKWR+VIY  RKQLYLGVFE+E +AAKA+D +A  +FG  A++NF
Sbjct:  103 LAPVCSISDGGLASPRAEMLFSPGSPGKSDSNRPRVQSAGRRGPRGQSQFKGVCVTRAGKWRSVIYVGRKQLYLGVFETEQEAAKAYDNSAVKYFGDGAVLNF 205
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BLAST of jgi.p|Trimin1|35501 vs. uniprot
Match: A0A7S3Y6J2_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y6J2_HETAK)

HSP 1 Score: 88.2 bits (217), Expect = 9.710e-17
Identity = 53/103 (51.46%), Postives = 70/103 (67.96%), Query Frame = 3 
Query:   54 LSPFSFLEGDALAAPMSP-LASASSPIKGG---PRNPTARRRGRKGKSIYRGVCVTREGKWRAVIYKERKQLYLGVFESEIDAAKAHDRAARYHFGAQAMVNF 350
            L+P   +    LA+P +  L S  SP K     PR  +A RRG +G+S ++GVCVTR GKWR+VIY  RKQLYLGVFE+E +AAKA+D +A  +FG  A++NF
Sbjct:  116 LAPVCSISDGGLASPRAEMLFSPGSPGKSDSNRPRVQSAGRRGPRGQSQFKGVCVTRAGKWRSVIYVGRKQLYLGVFETEQEAAKAYDNSAVKYFGDGAVLNF 218
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BLAST of jgi.p|Trimin1|35501 vs. uniprot
Match: A0A6H5KQM0_9PHAE (AP2 protein ( ERFprotein ) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQM0_9PHAE)

HSP 1 Score: 88.2 bits (217), Expect = 6.040e-16
Identity = 62/140 (44.29%), Postives = 78/140 (55.71%), Query Frame = 3 
Query:  108 LASASSPIKGGPRNPTARRRGRKGKSIYRGVCVTREGKWRAVIYKERKQLYLGVFESEIDAAKAHDRAARYHFGAQAMVNFLEPTDPEYMQHIPPPQEPEDEESTAHLGGTISPVSSTAKLARSAVKVEGKFA--PLLPS 521
            L SAS P     R   + RRG +G+S ++GVC+TR GKWRAVIY  RKQ YLGVF+SE DAA+A+D AA  HF   A +NF +  + +          P    +TA  GG  +P S T      A  +EG  A  P LPS
Sbjct:  381 LVSASGPPVTPVRVQASGRRGPRGQSRFKGVCITRAGKWRAVIYIGRKQKYLGVFDSEFDAARAYDAAALQHFAEGAKLNFPDGIERQLNDISSVSGRPF---ATAGAGGAAAPRSCTPP----ATYLEGDAAAAPALPS 513
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BLAST of jgi.p|Trimin1|35501 vs. uniprot
Match: D8LFR4_ECTSI (Pathogenesis-related transcriptional factor and ERF n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFR4_ECTSI)

HSP 1 Score: 84.7 bits (208), Expect = 7.140e-15
Identity = 40/63 (63.49%), Postives = 49/63 (77.78%), Query Frame = 3 
Query:  162 RRGRKGKSIYRGVCVTREGKWRAVIYKERKQLYLGVFESEIDAAKAHDRAARYHFGAQAMVNF 350
            RRG +G+S ++GVC+TR GKWRAVIY  RKQ YLGVF+SE DAA+A+D AA  HF   A +NF
Sbjct:  341 RRGPRGQSRFKGVCITRAGKWRAVIYIGRKQKYLGVFDSEFDAARAYDAAALQHFAEGAKLNF 403
[Close]
BLAST of jgi.p|Trimin1|35501 vs. uniprot
Match: A0A835ZDL0_9STRA (AP2/ERF domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDL0_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 1.970e-14
Identity = 40/63 (63.49%), Postives = 48/63 (76.19%), Query Frame = 3 
Query:  162 RRGRKGKSIYRGVCVTREGKWRAVIYKERKQLYLGVFESEIDAAKAHDRAARYHFGAQAMVNF 350
            RRGRKGKSIYRGV  TREGK+RAV+Y ERKQ+YLGV+  E+ AA+AHD+    H    A +NF
Sbjct:  125 RRGRKGKSIYRGVSHTREGKYRAVLYVERKQIYLGVYNDEVSAARAHDKGVLAHGLGHAYLNF 187
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|35501 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CI56_9STRA4.540e-142100.00AP2/ERF domain-containing protein n=1 Tax=Tribonem... [more]
A0A836CH07_9STRA2.110e-2794.44AP2/ERF domain-containing protein (Fragment) n=1 T... [more]
A0A6H5JUY3_9PHAE1.270e-2683.33AP2 protein ( ERFprotein ) n=1 Tax=Ectocarpus sp. ... [more]
D7FZ71_ECTSI1.370e-2584.38AP2/ERF domain-containing protein n=1 Tax=Ectocarp... [more]
A0A6H5LCQ5_9PHAE1.580e-2584.38AP2 protein ( ERFprotein ) n=1 Tax=Ectocarpus sp. ... [more]
A0A6V1UZI2_HETAK7.900e-1751.46Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S3Y6J2_HETAK9.710e-1751.46Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A6H5KQM0_9PHAE6.040e-1644.29AP2 protein ( ERFprotein ) n=1 Tax=Ectocarpus sp. ... [more]
D8LFR4_ECTSI7.140e-1563.49Pathogenesis-related transcriptional factor and ER... [more]
A0A835ZDL0_9STRA1.970e-1463.49AP2/ERF domain-containing protein n=1 Tax=Tribonem... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_19contigContig_19:873209..874172 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|35501|CE35500_95
BRITEko00000,ko03000
KEGG koko:K09284
GOsGO:0000003,GO:0003002,GO:0003006,GO:0003674,GO:0003700,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006355,GO:0007275,GO:0007389,GO:0008150,GO:0009653,GO:0009791,GO:0009888,GO:0009889,GO:0009908,GO:0010073,GO:0010093,GO:0010154,GO:0010468,GO:0010556,GO:0019219,GO:0019222,GO:0022414,GO:0031323,GO:0031326,GO:0032501,GO:0032502,GO:0035670,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044464,GO:0048316,GO:0048367,GO:0048437,GO:0048438,GO:0048440,GO:0048444,GO:0048449,GO:0048467,GO:0048481,GO:0048507,GO:0048608,GO:0048646,GO:0048731,GO:0048827,GO:0048856,GO:0050789,GO:0050794,GO:0051171,GO:0051252,GO:0060255,GO:0061458,GO:0065007,GO:0080090,GO:0090567,GO:0090696,GO:0090697,GO:0090698,GO:0090701,GO:0099402,GO:0140110,GO:1903506,GO:1905392,GO:1905393,GO:2000112,GO:2001141
Preferred nameAP2
Descriptionspecification of floral organ identity
COG categoryK
Max annot lvl2759|Eukaryota
EggNOG OGs28UNB@1|root,2QQXB@2759|Eukaryota
Evalue1.92e-16
Seed ortholog2880.D8LFR4
Hectar predicted targeting categoryother localisation
TranscriptId35823
TrackFilteredModels1
ProteinId35501
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|35501gene_5535Tribonema minus UTEX_B_3156 geneContig_19 873209..874172 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_5535_1exon_5535_1Tribonema minus UTEX_B_3156 exonContig_19 873209..873325 +
exon_5535_2exon_5535_2Tribonema minus UTEX_B_3156 exonContig_19 873419..874172 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_5535UTR5_5535Tribonema minus UTEX_B_3156 five_prime_UTRContig_19 873209..873306 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_5535CDS_5535Tribonema minus UTEX_B_3156 CDSContig_19 873307..873325 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_5535UTR3_5535Tribonema minus UTEX_B_3156 three_prime_UTRContig_19 874018..874172 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|35501Trimin1|35501|CE35500_95Tribonema minus UTEX_B_3156 polypeptideContig_19 873307..874017 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_5535 ID=mRNA_5535|Name=jgi.p|Trimin1|35501|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=871bp|location=Sequence derived from alignment at Contig_19:873209..874172+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CAGCCCGCCCCCTTGCCGCAGCGCAGCCAGCAGTATCGCCAGTAGCAGAG
GCACTGTCGCCCTTTAGCTTCCTGGAGGGGGACGCACTGGCCGCTCCCAT
GTCACCTCTAGCTTCAGCCTCCAGCCCCATTAAGGGCGGGCCCAGGAACC
CCACTGCCAGGCGGCGGGGCCGCAAGGGCAAGTCCATCTACCGCGGCGTC
TGTGTGACCAGGGAGGGCAAGTGGCGGGCAGTGATATACAAGGAGAGGAA
GCAGCTCTACCTAGGCGTCTTCGAGAGCGAGATCGACGCGGCCAAGGCCC
ACGACCGGGCTGCCCGCTACCACTTCGGCGCGCAGGCGATGGTCAACTTC
CTAGAGCCCACGGACCCCGAGTACATGCAGCACATCCCCCCCCCTCAAGA
GCCCGAAGACGAGGAGTCGACGGCACACCTGGGGGGGACGATCAGCCCAG
TTAGCAGCACAGCGAAGCTGGCGAGGTCCGCCGTCAAGGTGGAGGGCAAG
TTCGCCCCCTTGCTGCCGTCCCTCATGGACTTCGCCTTCCCTTTCGACGA
CTCGTCGGAGGACGACCTCAACAGCGCACACGACCTGGGCGCTTTTGACA
TGTCCGAAGACGTTGGCGACTTCCCTCTGCTCGACGGTGGGCATGAGCCC
TTCGGCGCGTCGCTCTCGTTTCTGGGCACCGCGGACGAGCTCGCCGCGGA
CCTGTGCACTGCATGAGAGCGTGACCCCCGAGGCGAAGGAGAGGACAGCT
ATTTTTTTGGCAAGATTTTCTTCCGCGCTACCGCCGCTGCGCTTTCAGCG
TCCGGCTCCATAGCTAAGGGTATATGGACAGGGGCAGCTACAATCAGCTT
TGTCGGTCACCTAGTGTGAGT
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protein sequence of jgi.p|Trimin1|35501

>Trimin1|35501|CE35500_95 ID=Trimin1|35501|CE35500_95|Name=jgi.p|Trimin1|35501|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=206bp
MSPLASASSPIKGGPRNPTARRRGRKGKSIYRGVCVTREGKWRAVIYKER
KQLYLGVFESEIDAAKAHDRAARYHFGAQAMVNFLEPTDPEYMQHIPPPQ
EPEDEESTAHLGGTISPVSSTAKLARSAVKVEGKFAPLLPSLMDFAFPFD
DSSEDDLNSAHDLGAFDMSEDVGDFPLLDGGHEPFGASLSFLGTADELAA
DLCTA*
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mRNA from alignment at Contig_19:873209..874172+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5535 ID=mRNA_5535|Name=jgi.p|Trimin1|35501|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=964bp|location=Sequence derived from alignment at Contig_19:873209..874172+ (Tribonema minus UTEX_B_3156 )
CAGCCCGCCCCCTTGCCGCAGCGCAGCCAGCAGTATCGCCAGTAGCAGAG
GCACTGTCGCCCTTTAGCTTCCTGGAGGGGGACGCACTGGCCGCTCCCAT
GTCACCTCTAGCTTCAGGTACGCGCTGGCTGTTGCTTGCCTCCGTGCGCA
CCTTGCTGCGTTAAATACCGCTTCGTGTCCTGACCCGCCTTTGCTTTCAC
GCTGCCGCAGCCTCCAGCCCCATTAAGGGCGGGCCCAGGAACCCCACTGC
CAGGCGGCGGGGCCGCAAGGGCAAGTCCATCTACCGCGGCGTCTGTGTGA
CCAGGGAGGGCAAGTGGCGGGCAGTGATATACAAGGAGAGGAAGCAGCTC
TACCTAGGCGTCTTCGAGAGCGAGATCGACGCGGCCAAGGCCCACGACCG
GGCTGCCCGCTACCACTTCGGCGCGCAGGCGATGGTCAACTTCCTAGAGC
CCACGGACCCCGAGTACATGCAGCACATCCCCCCCCCTCAAGAGCCCGAA
GACGAGGAGTCGACGGCACACCTGGGGGGGACGATCAGCCCAGTTAGCAG
CACAGCGAAGCTGGCGAGGTCCGCCGTCAAGGTGGAGGGCAAGTTCGCCC
CCTTGCTGCCGTCCCTCATGGACTTCGCCTTCCCTTTCGACGACTCGTCG
GAGGACGACCTCAACAGCGCACACGACCTGGGCGCTTTTGACATGTCCGA
AGACGTTGGCGACTTCCCTCTGCTCGACGGTGGGCATGAGCCCTTCGGCG
CGTCGCTCTCGTTTCTGGGCACCGCGGACGAGCTCGCCGCGGACCTGTGC
ACTGCATGAGAGCGTGACCCCCGAGGCGAAGGAGAGGACAGCTATTTTTT
TGGCAAGATTTTCTTCCGCGCTACCGCCGCTGCGCTTTCAGCGTCCGGCT
CCATAGCTAAGGGTATATGGACAGGGGCAGCTACAATCAGCTTTGTCGGT
CACCTAGTGTGAGT
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Coding sequence (CDS) from alignment at Contig_19:873209..874172+

>mRNA_5535 ID=mRNA_5535|Name=jgi.p|Trimin1|35501|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=618bp|location=Sequence derived from alignment at Contig_19:873209..874172+ (Tribonema minus UTEX_B_3156 )
ATGTCACCTCTAGCTTCAGCCTCCAGCCCCATTAAGGGCGGGCCCAGGAA
CCCCACTGCCAGGCGGCGGGGCCGCAAGGGCAAGTCCATCTACCGCGGCG
TCTGTGTGACCAGGGAGGGCAAGTGGCGGGCAGTGATATACAAGGAGAGG
AAGCAGCTCTACCTAGGCGTCTTCGAGAGCGAGATCGACGCGGCCAAGGC
CCACGACCGGGCTGCCCGCTACCACTTCGGCGCGCAGGCGATGGTCAACT
TCCTAGAGCCCACGGACCCCGAGTACATGCAGCACATCCCCCCCCCTCAA
GAGCCCGAAGACGAGGAGTCGACGGCACACCTGGGGGGGACGATCAGCCC
AGTTAGCAGCACAGCGAAGCTGGCGAGGTCCGCCGTCAAGGTGGAGGGCA
AGTTCGCCCCCTTGCTGCCGTCCCTCATGGACTTCGCCTTCCCTTTCGAC
GACTCGTCGGAGGACGACCTCAACAGCGCACACGACCTGGGCGCTTTTGA
CATGTCCGAAGACGTTGGCGACTTCCCTCTGCTCGACGGTGGGCATGAGC
CCTTCGGCGCGTCGCTCTCGTTTCTGGGCACCGCGGACGAGCTCGCCGCG
GACCTGTGCACTGCATGA
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