mRNA_5522 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	jgi.p\|Trimin1\|348072
Unique Name	mRNA_5522
Type	mRNA
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )

Homology

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BLAST of jgi.p|Trimin1|348072 vs. uniprot
Match: A0A835Z4Y6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4Y6_9STRA)

HSP 1 Score: 271 bits (692), Expect = 1.260e-89
Identity = 176/176 (100.00%), Postives = 176/176 (100.00%), Query Frame = 1

Query:    1 MDAISIKAGRLGGVDLLAYAIGVLSGEEGTLTAAEAQRVDLVPQAIKAAAAAYGAAAVAEPLARALAKVTDGPDGVRVDQASDPDEESDPEFMSSMVQLAQQVYEEWVETHAPQSDEALALRAGQQLVARSXXXXXXXXXXXXXXXXXXXXXXHVLPGGRVEAALAASFSRQAVGV 528
            MDAISIKAGRLGGVDLLAYAIGVLSGEEGTLTAAEAQRVDLVPQAIKAAAAAYGAAAVAEPLARALAKVTDGPDGVRVDQASDPDEESDPEFMSSMVQLAQQVYEEWVETHAPQSDEALALRAGQQLVARSXXXXXXXXXXXXXXXXXXXXXXHVLPGGRVEAALAASFSRQAVGV
Sbjct:    1 MDAISIKAGRLGGVDLLAYAIGVLSGEEGTLTAAEAQRVDLVPQAIKAAAAAYGAAAVAEPLARALAKVTDGPDGVRVDQASDPDEESDPEFMSSMVQLAQQVYEEWVETHAPQSDEALALRAGQQLVARSXXXXXXXXXXXXXXXXXXXXXXHVLPGGRVEAALAASFSRQAVGV 176

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|348072 vs. uniprot

BLAST of jgi.p|Trimin1|348072 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A835Z4Y6_9STRA	1.260e-89	100.00	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_19	contig	Contig_19:749912..752670 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Properties


Property Name	Value
ProteomeId	Trimin1\|348072\|estExt_Genemark1.C_Ctg_190091
Hectar predicted targeting category	other localisation
TranscriptId	348394
Track	FilteredModels1
ProteinId	348072

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|348072	gene_5522	Tribonema minus UTEX_B_3156	gene	Contig_19 749912..752670 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
exon_5522_2	exon_5522_2	Tribonema minus UTEX_B_3156	exon	Contig_19 749912..750382 -
exon_5522_1	exon_5522_1	Tribonema minus UTEX_B_3156	exon	Contig_19 752426..752670 -

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
UTR3_5522	UTR3_5522	Tribonema minus UTEX_B_3156	three_prime_UTR	Contig_19 749912..750096 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
CDS_5522	CDS_5522	Tribonema minus UTEX_B_3156	CDS	Contig_19 752426..752670 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|348072	Trimin1\|348072\|estExt_Genemark1.C_Ctg_190091	Tribonema minus UTEX_B_3156	polypeptide	Contig_19 750097..752670 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Contig_19:749912..752670-
coding sequence from alignment at Contig_19:749912..752670-

spliced messenger RNA

>mRNA_5522 ID=mRNA_5522|Name=jgi.p|Trimin1|348072|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=716bp|location=Sequence derived from alignment at Contig_19:749912..752670- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGACGCTATCAGCATCAAGGCGGGGCGGCTCGGAGGCGTTGACCTGTT
GGCTTATGCCATTGGCGTCCTGTCAGGGGAGGAAGGTACCCTCACTGCTG
CCGAGGCACAGCGTGTGGATCTCGTTCCGCAGGCCATCAAGGCTGCAGCA
GCTGCGTACGGAGCCGCGGCCGTAGCTGAACCGCTGGCACGGGCGCTAGC
GAAGGTCACCGACGGGCCCGACGGCGTTCGCGTGGACCAAGCCAGCGACC
CAGACGAGGAGTCGGACCCGGAGTTCATGTCTTCAATGGTACAGCTGGCC
CAGCAAGTATACGAGGAGTGGGTGGAGACCCATGCTCCGCAGTCAGATGA
GGCGCTCGCGCTGCGCGCCGGACAACAGCTCGTGGCGAGGTCTTCATACG
CGGCGTGGCTGCAGGAGCACGCTCCCGCATCACTGGACGCGGTGGCGCTT
CGCGCCGGCCACGTGCTGCCTGGCGGTCGCGTGGAGGCAGCGCTCGCCGC
GTCATTTTCGCGGCAGGCGGTTGGCGTGTGAACATCGGTTCAGCCCCTGA
AGGCGTCACGGTCGCTAATGCAAAAGGATGCATGTGCTAGGGTTAAAGCG
CGCGCGTAACATGATCACCGGCCGCAGAGCGCCCTGATTGCAGGCGAGTG
GTGTGAGCACAGTGGCCACATGGCCATTTGTTTGCTGCTCGCTTACCTGT
GTTCCACATGCCTGGC

protein sequence of jgi.p|Trimin1|348072

>Trimin1|348072|estExt_Genemark1.C_Ctg_190091 ID=Trimin1|348072|estExt_Genemark1.C_Ctg_190091|Name=jgi.p|Trimin1|348072|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=177bp
MDAISIKAGRLGGVDLLAYAIGVLSGEEGTLTAAEAQRVDLVPQAIKAAA
AAYGAAAVAEPLARALAKVTDGPDGVRVDQASDPDEESDPEFMSSMVQLA
QQVYEEWVETHAPQSDEALALRAGQQLVARSSYAAWLQEHAPASLDAVAL
RAGHVLPGGRVEAALAASFSRQAVGV*

mRNA from alignment at Contig_19:749912..752670-

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_5522 ID=mRNA_5522|Name=jgi.p|Trimin1|348072|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2759bp|location=Sequence derived from alignment at Contig_19:749912..752670- (Tribonema minus UTEX_B_3156 )
ATGGACGCTATCAGCATCAAGGCGGGGCGGCTCGGAGGCGTTGACCTGTT
GGCTTATGCCATTGGCGTCCTGTCAGGGGAGGAAGGTACCCTCACTGCTG
CCGAGGCACAGCGTGTGGATCTCGTTCCGCAGGCCATCAAGGCTGCAGCA
GCTGCGTACGGAGCCGCGGCCGTAGCTGAACCGCTGGCACGGGCGCTAGC
GAAGGTCACCGACGGGCCCGACGGCGTTCGCGTGGACCAAGCCAGGTGAG
ATGTAGTGCAGCAGTACATTGCGGCTACTGCTGCTCTGTATTCTGCAGTT
GTTCAGCAGGAAAAGATGGCTAACGCTGCCCTATGTATTCTGCTTATGCT
CTCACTGCTCTGTACTGAAGTATCGATGACTGTCACTAGCAGTAAAGCTC
ACATGGAGTTGCCACAATCAAGTTCAGCCGTGGCACAATCTGGCCGCCGC
CTCTTCGCTTGCTCTGCTTACATTGCCTGCTTGTGTGAACCTCGGCCAAG
CTGCTCTGTTCTGCTCGACACTGCAGGTCAACCCTTACTTGCTCTGCTCA
CATGTAGGCTTGTTGCAATCTTAAATCGTAAAGTTACGCGTAACCTTTTA
CGCCGTAGTTCATGCCGTAAAGCAGAACGCATATCATAAGACCGTAAGGT
ATGGTACCGTAATCTACAGCATGTATTGTTTGCAGGTAGTAGATAGTAGT
TCGCTAGACTAAGTAGGCTACCAGATATCTCGTGTTTTTCGTGCAGCTGC
GCACACCCTAAAAAATCAGGTTGAAGTGAAGTTCCGTTGCAGAGGCTTTC
ACGAGTGCTGCTTGTGAGATGGTGGCGAAAATGCAATGACGGCCCTTAAC
GCTGTTAGACAGCCTGCGCCCACGAGCTTCTTTGCGTGGCGGAACAAGTA
GTTGCTGATATGCATGTAAGCGTACAAAGCTTACAGTGCAAAGCGGAGTG
GGACTTGGGTGGCGGGCGAGCTTGCAAAAGGGAAGGCTGCTGCTAGATGC
GACCACTACGGCAAATACCATTTTACTGTTACTCCGGCAAGAACGATGCT
GGGGTACACCAAATGACCGCAGCACCTGAAAGGCCCGCATTGAGCTCAGG
GCTTCGCCAGCACATGCCTCAAGGGTGGCCTATCTGTGCTGCTCTGAAGC
AACAGACATAACAATTGTCCTCCACCATGTTGCATCGGTCCTGTGTGTGG
TACATAATTGTTTTGGGTTGCGGTTTGCACATTTTTACCACCAAAGCCCT
CGTTTTTGAGCTCATTTACGACATTGACGGCTTTTGCTATTTACGATCAC
GTCACACTCAAGGTACGATTACAATTTACGATGAGCAACAATTTTACGGC
TTACGATTACGGTACGTTACGTTACGATTACAATTCACGGCTTATATTTC
CAAAAATTCAAGATTGCAACAACCCCACTCATGTGCAATGCATGCCCGAT
CTGCTACTACATGTGTTTACCGACGGAGTTTATGAAAATCCTGCTAACCT
GTATGTATCTTACGAATGACCTCCTCTCACCCCTGCACCTTGGGGCAGCT
GCGCTCAAAAGACAGGGAAAAGCGTAGATATCATCACGACCTGACCCACA
CAATGCTGTGCAAACTCCTGAGGCTCTATAGTATATATCCTACCAGTAGT
ACACGTACAAGACCGCAGGGCCTTGTTTGACTAATCAGCCACAGCAGCCT
TTGCCACTGGCTCCTACCATGCACTTCAAGATTTATGGTACTCCAAACAG
GCGCCTGCCTTCATTGCTGCATCGAAAGTATAACGTGAGGGTGATCATCA
TGCATTTGCCAATAAATGTCTACTGTCACGCTGCCTCTGTTGCACGTGCA
TCTCAGGTGGCAGCACCCAGAAGGGCCTGCTGCAATCAAGCACCTGCCTG
GCTTGGAGTTCATTCATGCAAGCGTGGACTTTTGCGAGGGCGAGGGTAAC
TGGACATATTTCGAATGGATTCGCGAGACTCCACAGACCACCATGATTAC
CGAGACGCTCTGGCGTTGGGCGATCTATTCTGACAGGCTCGACATTGCCG
CGGAAACTCTCTTCATTGCCACTATCGAAACCCACCGGCACGATGTCTTG
ACTGCCATACTGTCCACTGGCAGGTACAATGCAGGTGATGGTGGCGCACT
TTACTATGCTTGGCAGGAACTTGAAATGTTTCCTAGAGACGTGGAGCGCG
CCCCAGAAGCGCACAGGTGCTTCGCCCCGGCCTGGTGTTTCTGGCACAAC
AACGTTGGCGTGTGGACCCTAGCTGCCCCACAACTGAGCGACCCAGACGA
GGAGTCGGACCCGGAGTTCATGTCTTCAATGGTACAGCTGGCCCAGCAAG
TATACGAGGAGTGGGTGGAGACCCATGCTCCGCAGTCAGATGAGGCGCTC
GCGCTGCGCGCCGGACAACAGCTCGTGGCGAGGTCTTCATACGCGGCGTG
GCTGCAGGAGCACGCTCCCGCATCACTGGACGCGGTGGCGCTTCGCGCCG
GCCACGTGCTGCCTGGCGGTCGCGTGGAGGCAGCGCTCGCCGCGTCATTT
TCGCGGCAGGCGGTTGGCGTGTGAACATCGGTTCAGCCCCTGAAGGCGTC
ACGGTCGCTAATGCAAAAGGATGCATGTGCTAGGGTTAAAGCGCGCGCGT
AACATGATCACCGGCCGCAGAGCGCCCTGATTGCAGGCGAGTGGTGTGAG
CACAGTGGCCACATGGCCATTTGTTTGCTGCTCGCTTACCTGTGTTCCAC
ATGCCTGGC

Coding sequence (CDS) from alignment at Contig_19:749912..752670-

>mRNA_5522 ID=mRNA_5522|Name=jgi.p|Trimin1|348072|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=531bp|location=Sequence derived from alignment at Contig_19:749912..752670- (Tribonema minus UTEX_B_3156 )
ATGGACGCTATCAGCATCAAGGCGGGGCGGCTCGGAGGCGTTGACCTGTT
GGCTTATGCCATTGGCGTCCTGTCAGGGGAGGAAGGTACCCTCACTGCTG
CCGAGGCACAGCGTGTGGATCTCGTTCCGCAGGCCATCAAGGCTGCAGCA
GCTGCGTACGGAGCCGCGGCCGTAGCTGAACCGCTGGCACGGGCGCTAGC
GAAGGTCACCGACGGGCCCGACGGCGTTCGCGTGGACCAAGCCAGCGACC
CAGACGAGGAGTCGGACCCGGAGTTCATGTCTTCAATGGTACAGCTGGCC
CAGCAAGTATACGAGGAGTGGGTGGAGACCCATGCTCCGCAGTCAGATGA
GGCGCTCGCGCTGCGCGCCGGACAACAGCTCGTGGCGAGGTCTTCATACG
CGGCGTGGCTGCAGGAGCACGCTCCCGCATCACTGGACGCGGTGGCGCTT
CGCGCCGGCCACGTGCTGCCTGGCGGTCGCGTGGAGGCAGCGCTCGCCGC
GTCATTTTCGCGGCAGGCGGTTGGCGTGTGA