mRNA_5513 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|348069
Unique NamemRNA_5513
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|348069 vs. uniprot
Match: A0A835Z725_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z725_9STRA)

HSP 1 Score: 835 bits (2157), Expect = 4.000e-304
Identity = 464/464 (100.00%), Postives = 464/464 (100.00%), Query Frame = 1 
Query:    1 MGRALPRPWDTVAAAPRGGEDVLLEAAGARFAQHAWPLHTKYYSTQIRFWEQRELPSISAVHEDGAIHAAAGEHGVEGIIAVFDVTQDDAFESVREWGTFCDERDALALRLLVASKASHLRKLQMADLFADGDEMERRREVYIHWCLDHGFEYIEANCCRPDLGGDTREKEGVPRVVEALQSTAWASIGAPGRGFSSGXXXXXXXXXXXXXXXGGSGGLDEDXXXXXXXXSGEEGEWDDFGEGVPPAGYGALDDGSDTDAGAASPSSDAHLPVDDGGDHGGFVDEAAVAXXXXXXXXXXXXAAGESYTTTVPGIINFTVQREKRDPGCVTLALLALLLQEAHVDTGAAQAQADTATPPAPPQHSGGATAGAGDPLSRALGVMLDADDGGEEQGQGDEGGVEFERLLSAVHSVRRSVQDLPDAQRRDQAAAMALRIMGMMGMGADEEDSSDEDDTHMTASDSRQQ 1392
            MGRALPRPWDTVAAAPRGGEDVLLEAAGARFAQHAWPLHTKYYSTQIRFWEQRELPSISAVHEDGAIHAAAGEHGVEGIIAVFDVTQDDAFESVREWGTFCDERDALALRLLVASKASHLRKLQMADLFADGDEMERRREVYIHWCLDHGFEYIEANCCRPDLGGDTREKEGVPRVVEALQSTAWASIGAPGRGFSSGXXXXXXXXXXXXXXXGGSGGLDEDXXXXXXXXSGEEGEWDDFGEGVPPAGYGALDDGSDTDAGAASPSSDAHLPVDDGGDHGGFVDEAAVAXXXXXXXXXXXXAAGESYTTTVPGIINFTVQREKRDPGCVTLALLALLLQEAHVDTGAAQAQADTATPPAPPQHSGGATAGAGDPLSRALGVMLDADDGGEEQGQGDEGGVEFERLLSAVHSVRRSVQDLPDAQRRDQAAAMALRIMGMMGMGADEEDSSDEDDTHMTASDSRQQ
Sbjct:    1 MGRALPRPWDTVAAAPRGGEDVLLEAAGARFAQHAWPLHTKYYSTQIRFWEQRELPSISAVHEDGAIHAAAGEHGVEGIIAVFDVTQDDAFESVREWGTFCDERDALALRLLVASKASHLRKLQMADLFADGDEMERRREVYIHWCLDHGFEYIEANCCRPDLGGDTREKEGVPRVVEALQSTAWASIGAPGRGFSSGXXXXXXXXXXXXXXXGGSGGLDEDXXXXXXXXSGEEGEWDDFGEGVPPAGYGALDDGSDTDAGAASPSSDAHLPVDDGGDHGGFVDEAAVAXXXXXXXXXXXXAAGESYTTTVPGIINFTVQREKRDPGCVTLALLALLLQEAHVDTGAAQAQADTATPPAPPQHSGGATAGAGDPLSRALGVMLDADDGGEEQGQGDEGGVEFERLLSAVHSVRRSVQDLPDAQRRDQAAAMALRIMGMMGMGADEEDSSDEDDTHMTASDSRQQ 464
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BLAST of jgi.p|Trimin1|348069 vs. uniprot
Match: A0A6H5L249_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L249_9PHAE)

HSP 1 Score: 125 bits (313), Expect = 3.900e-27
Identity = 71/197 (36.04%), Postives = 101/197 (51.27%), Query Frame = 1 
Query:   64 VLLEAAGARFAQHAWPLHTKYYSTQIRFWEQRE--LPSISAVHEDGAIHAAAGEHGVEGIIAVFDVTQDDAFESVREWGTFCDERDALALRLLVASKASHLRK---------------LQMADLFADGDE-------------MERRREVYIHWCLDHGFEYIEANCCRPDLGGDTREKEGVPRVVEALQSTAWASI 564
            VLLE A A+F      + TKYY+ QI FW Q +  +P +       A+ +A    G+EGII +FD+ Q+  F+   +W    ++R+  A R+ V SK   L +               L+ A+   +GD              +  RR   + WCLDHGFEY+EA+C   + GG+ REKEGVPR+VEALQS  W  +
Sbjct:   62 VLLEQANAKFDVFPASITTKYYNAQISFWRQAQAAVPIL-------ALRSAEQLEGLEGIIVLFDLRQESGFDEASQWAALMEDREECAFRVCVGSKLDLLPQDPGDGAGFGTGAETTLEPAESGLEGDAAXXXXXXXXXXEGLRERRRRCLGWCLDHGFEYVEADCRDSNTGGELREKEGVPRIVEALQSNVWTDM 251
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BLAST of jgi.p|Trimin1|348069 vs. uniprot
Match: D7FHG9_ECTSI (IRC6, uncharacterized protein interacting with AP adaptor complexes n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHG9_ECTSI)

HSP 1 Score: 103 bits (258), Expect = 3.460e-20
Identity = 60/169 (35.50%), Postives = 86/169 (50.89%), Query Frame = 1 
Query:  130 STQIRFWEQRE--LPSISAVHEDGAIHAAAGEHGVEGIIAVFDVTQDDAFESVREWGTFCDERDALALRLLVASKASHLRK----------------------LQMADLFADGDEMERRREVYIHWCLDHGFEYIEANCCRPDLGGDTREKEGVPRVVEALQSTAWASI 564
            S  I FW Q +  +P +       A+ +A    G+EGII VFD+ Q+ + + V +W    ++R+  A R+ V SK   L +                      L+  D  A  + ++ RR   + WCLDHGFEY+EA+C     GG+ REKEGVPR+VEALQS  W  +
Sbjct:    4 SLTISFWRQAQAAVPVL-------ALRSAEQLEGLEGIIVVFDLRQESSLDEVAQWAALVEDREECAFRVCVGSKLDLLPEDPGDGTGFGTGAETAPEPAESGLEGGDAAA-AEGLQERRSRCLGWCLDHGFEYVEADCRDSYTGGELREKEGVPRIVEALQSNVWTGM 164
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BLAST of jgi.p|Trimin1|348069 vs. uniprot
Match: A0A7J7Q817_9CHLO (Alpha and gamma adaptin binding protein p34-domain-containing protein n=1 Tax=Scenedesmus sp. NREL 46B-D3 TaxID=2650976 RepID=A0A7J7Q817_9CHLO)

HSP 1 Score: 69.3 bits (168), Expect = 4.400e-9
Identity = 49/167 (29.34%), Postives = 79/167 (47.31%), Query Frame = 1 
Query:   94 AQHAWPLHTKYYSTQIRFWEQRELPSISAVHEDGA---IHAAAGEHGVEGIIAVFDVTQDDAFESVREWGTFCDERDALALRLLVASKASHLRKLQMADLFADGDEMERRREVYIH----WCLDHGFEYIEANCCRPDLGGDTR---EKEGVPRVVEALQSTAWASI 564
            A +   L TKYY+  +       L      H+      + A A E  ++ ++ VFD + + +F S R W     E D++ ++LLVA+KA  L++       A        R  ++H    WC+D GFEY+EA   +P +        E++GV RV+ ALQ+  W  +
Sbjct:   52 ADYTLRLDTKYYTADV-------LVRALGTHQQDKQQQLPAHAWEQ-LQALVLVFDASSEASFVSARSWAD-ARETDSIEVKLLVANKADRLQQQSTRASSAAAGAAGSCRAPWLHDAVSWCVDKGFEYVEAAAGKPAVDAALHLEGEQQGVVRVLAALQAHLWPGM 209
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BLAST of jgi.p|Trimin1|348069 vs. uniprot
Match: L1J370_GUITC (Uncharacterized protein n=2 Tax=Guillardia theta TaxID=55529 RepID=L1J370_GUITC)

HSP 1 Score: 69.7 bits (169), Expect = 5.770e-9
Identity = 44/162 (27.16%), Postives = 83/162 (51.23%), Query Frame = 1 
Query:   85 ARFAQHAWPLHT--KYYSTQIRFWEQRELPSISAVHEDGAIHAAAGEHGVEGIIAVFDVTQDDAFESVREWGTFCDERDALALRLLVASKASHLRKLQMADLFADGDEMERRREVYIHWCLDHGFEYIEANCCRPDLGGDTREKEGVPRVVEALQSTAWASI 564
            +R A+ +  LH   KY++ +++         +  VH    +    GE  +EG+I V+D +Q++ F+S ++W +  D+ D L L + VA+K   L+          GD  E  ++   +WC+ H  E++  +  +     D R+ EG+ RVVEA+ +  W+++
Sbjct:   46 SRAARDSTVLHVENKYFNAEVK---------VKVVHSVDEVREERGEKEIEGLILVYDSSQEEGFQSFQQWLSLLDQLD-LDLLICVANKTDLLK----------GDPSELLQDAE-NWCILHQIEFVHCSALQDRFTYD-RDSEGLDRVVEAVGNHTWSNL 185
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BLAST of jgi.p|Trimin1|348069 vs. uniprot
Match: A0A0D2MZC2_9CHLO (Uncharacterized protein (Fragment) n=1 Tax=Monoraphidium neglectum TaxID=145388 RepID=A0A0D2MZC2_9CHLO)

HSP 1 Score: 61.6 bits (148), Expect = 5.200e-7
Identity = 44/120 (36.67%), Postives = 55/120 (45.83%), Query Frame = 1 
Query:  223 GVEGIIAVFDVTQDDAFESVREWGTFCDERDALALRLLVASKASHLRKLQMADLFADGDEMERRREVYIHWCLDHGFEYIEANCCRPD------LGGDTREKEGVPRVVEALQSTAWASI 564
            G E +I V D T    F + R W    D   A  +RLL+A+KA        A   A G       E    WCLD GFEY+EA    P       L GD   ++GV RV+EALQ+  W  +
Sbjct:  108 GAEAVILVCDATNPSTFAAARRWAAAVDSSGA-GVRLLIANKAD------AAPRAAAGGSGAALPEA-AGWCLDEGFEYVEAAAGAPAADAALALDGD---RQGVVRVLEALQAHMWPGL 216
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BLAST of jgi.p|Trimin1|348069 vs. uniprot
Match: A0A7S0F5E3_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7S0F5E3_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 5.620e-7
Identity = 26/47 (55.32%), Postives = 32/47 (68.09%), Query Frame = 1 
Query:  427 IHWCLDHGFEYIEANCCRPDL--GGDTREKEGVPRVVEALQSTAWAS 561
            I WCLDHG+EY+EAN        G D R+KEG  R++EA+Q T WAS
Sbjct:    1 IMWCLDHGYEYVEANLSAEGQAKGHDDRDKEGFARIIEAIQGTVWAS 47
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BLAST of jgi.p|Trimin1|348069 vs. uniprot
Match: A0A7S2S1P7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2S1P7_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 6.840e-7
Identity = 25/56 (44.64%), Postives = 35/56 (62.50%), Query Frame = 1 
Query:  400 EMERRREVYIHWCLDHGFEYIEANCCRP--DLGGDTREKEGVPRVVEALQSTAWAS 561
            E E+     + WCLD G+EY+EA+        G D REK+G PR++EA+Q T W+S
Sbjct:    1 EYEKEYSRRVLWCLDRGYEYVEADLSEKGQSTGHDVREKDGFPRIIEAIQGTVWSS 56
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BLAST of jgi.p|Trimin1|348069 vs. uniprot
Match: A0A7S2K1K1_9STRA (Hypothetical protein n=2 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2K1K1_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 2.030e-6
Identity = 30/47 (63.83%), Postives = 32/47 (68.09%), Query Frame = 1 
Query:  433 WCLDHGFEYIEANCCRPD----LGGDTREKEGVPRVVEALQSTAWAS 561
            WCLDHGFEYIEA C   D    +G D REKEG  RVVEA+ ST W S
Sbjct:   60 WCLDHGFEYIEA-CNLSDTSVLVGHDVREKEGFARVVEAIGSTIWTS 105
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BLAST of jgi.p|Trimin1|348069 vs. uniprot
Match: A0A7S1D022_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1D022_CYCTE)

HSP 1 Score: 59.7 bits (143), Expect = 4.140e-6
Identity = 45/154 (29.22%), Postives = 69/154 (44.81%), Query Frame = 1 
Query:  112 LHTKYYSTQIRFWEQRELPSISAVHEDGAIHAAAGEHGVEGIIAVFDVTQDDAFESVREWGTFCDERDALA--LRLLVASKASHLRKLQMADLFADGDEMERRREVYIHWCLDHGFEYIEANCCRPDL--GGDTREKEGVPRVVEALQSTAWAS 561
            +  +Y++  I   E    P      EDG I         + + +  D++   AF+ + +     +  D     LRL V     H+ +L   +L     E E  R V   WCLDHG+EY+EA+        G D R+K+G  R+VEA+  T W+S
Sbjct:   43 ISNRYFTANISLEEIGSGPQDDNCQEDGIILV------FDSLKSNPDLSDVSAFDGLTDAHASAETLDQCGDLLRLCVGV---HIGELSPTELRGKKHEDEYSRRVL--WCLDHGYEYVEADLSDEGRHKGHDERDKDGYARIVEAIAGTVWSS 185
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|348069 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
A0A835Z725_9STRA4.000e-304100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6H5L249_9PHAE3.900e-2736.04Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FHG9_ECTSI3.460e-2035.50IRC6, uncharacterized protein interacting with AP ... [more]
A0A7J7Q817_9CHLO4.400e-929.34Alpha and gamma adaptin binding protein p34-domain... [more]
L1J370_GUITC5.770e-927.16Uncharacterized protein n=2 Tax=Guillardia theta T... [more]
A0A0D2MZC2_9CHLO5.200e-736.67Uncharacterized protein (Fragment) n=1 Tax=Monorap... [more]
A0A7S0F5E3_9STRA5.620e-755.32Hypothetical protein n=1 Tax=Craspedostauros austr... [more]
A0A7S2S1P7_9STRA6.840e-744.64Hypothetical protein (Fragment) n=1 Tax=Eucampia a... [more]
A0A7S2K1K1_9STRA2.030e-663.83Hypothetical protein n=2 Tax=Leptocylindrus danicu... [more]
A0A7S1D022_CYCTE4.140e-629.22Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_19contigContig_19:648131..653745 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|348069|estExt_Genemark1.C_Ctg_190079
BRITEko00000,ko03036
KEGG koko:K19870
GOsGO:0000011,GO:0003674,GO:0003824,GO:0003924,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005768,GO:0005769,GO:0005770,GO:0005829,GO:0005886,GO:0006605,GO:0006623,GO:0006810,GO:0006886,GO:0006892,GO:0006895,GO:0006897,GO:0006914,GO:0006996,GO:0007032,GO:0007033,GO:0007034,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009987,GO:0010256,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016043,GO:0016050,GO:0016192,GO:0016197,GO:0016236,GO:0016462,GO:0016482,GO:0016604,GO:0016607,GO:0016787,GO:0016817,GO:0016818,GO:0017111,GO:0022411,GO:0022607,GO:0030139,GO:0031410,GO:0031974,GO:0031981,GO:0031982,GO:0032509,GO:0032511,GO:0033036,GO:0033365,GO:0034613,GO:0036010,GO:0036257,GO:0036258,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044085,GO:0044237,GO:0044248,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0045184,GO:0045324,GO:0046907,GO:0048193,GO:0048308,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0061709,GO:0061912,GO:0061919,GO:0070013,GO:0070727,GO:0070925,GO:0071702,GO:0071705,GO:0071840,GO:0071944,GO:0071985,GO:0072594,GO:0072665,GO:0072666,GO:0097708,GO:0098657,GO:1903008
Preferred nameAAGAB
Descriptionprotein transport
COG categoryL
Max annot lvl2759|Eukaryota
EggNOG OGsCOG0545@1|root,KOG4273@1|root,KOG0543@2759|Eukaryota,KOG4273@2759|Eukaryota
Evalue9.02e-10
Seed ortholog55529.EKX42584
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionIRC6, uncharacterised protein interacting with AP adaptor complexes
Ec32 orthologEc-25_002450.1
TranscriptId348391
TrackFilteredModels1
ProteinId348069
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|348069gene_5513Tribonema minus UTEX_B_3156 geneContig_19 648131..653745 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|348069Trimin1|348069|estExt_Genemark1.C_Ctg_190079Tribonema minus UTEX_B_3156 polypeptideContig_19 648131..653718 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_5513_1exon_5513_1Tribonema minus UTEX_B_3156 exonContig_19 648131..648186 +
exon_5513_2exon_5513_2Tribonema minus UTEX_B_3156 exonContig_19 648611..648692 +
exon_5513_3exon_5513_3Tribonema minus UTEX_B_3156 exonContig_19 648918..649040 +
exon_5513_4exon_5513_4Tribonema minus UTEX_B_3156 exonContig_19 649761..649874 +
exon_5513_5exon_5513_5Tribonema minus UTEX_B_3156 exonContig_19 650453..650567 +
exon_5513_6exon_5513_6Tribonema minus UTEX_B_3156 exonContig_19 651328..651557 +
exon_5513_7exon_5513_7Tribonema minus UTEX_B_3156 exonContig_19 652060..652257 +
exon_5513_8exon_5513_8Tribonema minus UTEX_B_3156 exonContig_19 652868..652969 +
exon_5513_9exon_5513_9Tribonema minus UTEX_B_3156 exonContig_19 653105..653335 +
exon_5513_10exon_5513_10Tribonema minus UTEX_B_3156 exonContig_19 653575..653745 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_5513CDS_5513Tribonema minus UTEX_B_3156 CDSContig_19 648131..648186 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_5513UTR3_5513Tribonema minus UTEX_B_3156 three_prime_UTRContig_19 653719..653745 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_5513 ID=mRNA_5513|Name=jgi.p|Trimin1|348069|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1422bp|location=Sequence derived from alignment at Contig_19:648131..653745+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGGGCGGGCCCTGCCCCGCCCCTGGGACACGGTGGCGGCTGCCCCTCG
TGGAGGTGAGGACGTGCTTCTGGAAGCAGCTGGCGCAAGATTCGCGCAAC
ACGCGTGGCCGCTGCACACCAAATACTATTCCACGCAGATACGCTTTTGG
GAGCAGCGGGAGCTGCCATCCATATCAGCGGTGCACGAGGATGGAGCCAT
ACATGCTGCGGCGGGAGAGCATGGAGTAGAGGGCATCATTGCCGTGTTTG
ACGTCACCCAGGATGATGCATTTGAATCCGTGCGAGAGTGGGGCACTTTC
TGCGACGAGCGCGATGCGCTGGCGCTGCGGTTGTTGGTGGCCAGCAAGGC
GAGTCACCTGCGGAAGTTGCAAATGGCAGATTTGTTCGCGGACGGTGACG
AAATGGAGCGCAGAAGAGAGGTGTACATTCACTGGTGTCTGGACCACGGT
TTTGAGTACATTGAGGCCAACTGCTGCCGACCAGATCTAGGCGGCGACAC
GCGGGAGAAGGAGGGCGTCCCGCGCGTTGTGGAGGCGCTGCAGTCTACTG
CGTGGGCTTCAATAGGGGCGCCCGGCAGAGGGTTCAGCAGCGGCGGCGGC
GGCGGCGGGTTTGGAGCGCACGCTACTGCCGCGGTTGCGGGGGGCTCAGG
GGGGCTCGATGAGGATGGGGGGTCGGAGGAGGGGGGCGGCAGCGGGGAGG
AGGGGGAGTGGGACGACTTTGGCGAAGGTGTGCCGCCGGCCGGGTACGGC
GCTCTTGATGATGGCAGCGATACAGATGCAGGGGCCGCCAGTCCTAGTAG
TGATGCACACTTGCCTGTTGACGATGGAGGCGACCACGGGGGCTTTGTGG
ATGAAGCTGCAGTGGCGGCGGCGGCGGCGGCAGCGGCGGCGGCGGAGGCG
GAGGCGGCAGGGGAGAGCTATACCACAACAGTGCCCGGCATCATAAACTT
CACCGTGCAGCGCGAGAAACGCGACCCCGGTTGCGTCACTCTGGCCTTGC
TGGCGCTCCTACTACAGGAGGCACACGTGGACACCGGCGCTGCACAAGCG
CAAGCGGACACCGCGACCCCTCCCGCGCCGCCGCAACACAGCGGCGGCGC
AACCGCCGGCGCCGGCGACCCGCTGTCACGCGCGCTGGGCGTCATGCTCG
ACGCCGACGACGGCGGCGAGGAGCAGGGGCAGGGGGACGAAGGGGGCGTG
GAATTTGAGCGGCTGCTGTCGGCGGTTCACAGCGTGCGCCGCAGCGTGCA
GGACTTGCCCGACGCGCAGCGGCGCGATCAGGCCGCCGCCATGGCGCTGC
GCATCATGGGTATGATGGGTATGGGCGCAGACGAAGAGGACAGCAGCGAT
GAAGACGACACGCACATGACCGCCAGCGACTCGCGACAACAATGAATTGA
AGTTTTTCACAAGGAAGTTGAA
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protein sequence of jgi.p|Trimin1|348069

>Trimin1|348069|estExt_Genemark1.C_Ctg_190079 ID=Trimin1|348069|estExt_Genemark1.C_Ctg_190079|Name=jgi.p|Trimin1|348069|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=465bp
MGRALPRPWDTVAAAPRGGEDVLLEAAGARFAQHAWPLHTKYYSTQIRFW
EQRELPSISAVHEDGAIHAAAGEHGVEGIIAVFDVTQDDAFESVREWGTF
CDERDALALRLLVASKASHLRKLQMADLFADGDEMERRREVYIHWCLDHG
FEYIEANCCRPDLGGDTREKEGVPRVVEALQSTAWASIGAPGRGFSSGGG
GGGFGAHATAAVAGGSGGLDEDGGSEEGGGSGEEGEWDDFGEGVPPAGYG
ALDDGSDTDAGAASPSSDAHLPVDDGGDHGGFVDEAAVAAAAAAAAAAEA
EAAGESYTTTVPGIINFTVQREKRDPGCVTLALLALLLQEAHVDTGAAQA
QADTATPPAPPQHSGGATAGAGDPLSRALGVMLDADDGGEEQGQGDEGGV
EFERLLSAVHSVRRSVQDLPDAQRRDQAAAMALRIMGMMGMGADEEDSSD
EDDTHMTASDSRQQ*
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mRNA from alignment at Contig_19:648131..653745+

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5513 ID=mRNA_5513|Name=jgi.p|Trimin1|348069|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=5615bp|location=Sequence derived from alignment at Contig_19:648131..653745+ (Tribonema minus UTEX_B_3156 )
ATGGGGCGGGCCCTGCCCCGCCCCTGGGACACGGTGGCGGCTGCCCCTCG
TGGAGGGTGCCGAGCGTTGGCTGAACAGCAGGCACACAGGGTGGGAGTCA
CCAACGTGGCGCCAGCAAAATCCACCCAGAAACGTTTTGTGGTGAAGTTC
AAGTTCTTTGAAATCCGTGATGTCGTCCGTTGTGCTGATCGTGGGCCCGG
CAGCAGCTGGCAAGAGCACATTGTTGCAAGGCAAGTTTTTCGCAGCTGGG
AGTGGCACGGATCCGCACATACTTCACTAAGCGGGTGGAACGCGCGGATC
CAGGATCTGACCTGCTGTGTGACCTGCCGCTGCTGCCCTCAGGTTTAACT
TCCACAGCTGGCGAGCAAAATTGTTTGACTCTAACACAAAGGTTAGCTGG
GTCGTGTTCATTGCAGCGTTAGTGCGTTCCGGTGCCAAAGTTCAATTGAC
AATAATCCGCATTGTATGCATTGCGTGCAGTGAGGACGTGCTTCTGGAAG
CAGCTGGCGCAAGATTCGCGCAACACGCGTGGCCGCTGCACACCAAATAC
TATTCCACGCAGGTCAGTGCACGAGGTGCGCATTCGTGCACCAGTGCAGT
TGAAGTATGTGACCAAAATGAGATGATGTCAACAATTGATTGCAGGCTGA
CTGCAAGCACCAAGGCGTGCAGTCTGACTGTGAGCGCCATGACTTGCAAT
CACGGTGGATGCAGTACAAGACCCGCCCATATGTCGTTTTTGTGATTTTG
CGGTGGGCTTCTTGCCTTCTTCGTGCCTGCCTGCCAGATACGCTTTTGGG
AGCAGCGGGAGCTGCCATCCATATCAGCGGTGCACGAGGATGGAGCCATA
CATGCTGCGGCGGGAGAGCATGGAGTAGAGGGCATCATTGCCGTGTTTGA
CGTCACCCAGGTGAGGCTGTGCTGCCAGGGGATGTGAGCGGACCTTCTAA
TGAGCAACGCTGTTTGAAAGTACCTGATTACCACTGCTGTGACGATCGTC
TCGGTGTGATGAGGTGATGCTGTGAGGATCATTCAGCGACATACGTCACC
ACAGAAGCACTTCATAGAAGCATAGGCCCATTTGCAAGTGGTGGCATGCT
AGCACTCATGTCGTATACACCCTTGTATACAGCACATCATTACAATGCCT
GGCTCCTTGAATGTGACAGCCTACACTGATGACAACATTGCACATTTGTC
ATAGTTGGAGGTTTATGTTGTCAAACTTGGCAGCATGGAATCAACCCTGA
AGCTGGTGACAGGAAGGTCGCCAACCTTCGACCGGTGCATGACACTTGAT
GAGCGCTACAGCAGTACATTTCTCACTTCAAGGAGCATTGAAAGTGGGAA
GACATGACATGCACTCGCATGTGGTGCGTCGCGGACGAGCCAACATGAGC
AGATTATGCATGTTTACTTTGCGTAGGTATCTTGCTTGCTGGCGAATGTC
ACCATGGACAACCACCAGCTGCATTGCCTCGATTGCATGCACGCAGCTAG
TGAGCCGCTCCCTTGCGGCAGATCCACTCTCTGACCATACCTCAGCCCCT
ACGCAGGCAGCCTATTGTCCGACCGTGTAGCTGACATTCTCTGACATTCG
TCATTGCTGGTGTTGGTGTTGACGCTGCAGGATGATGCATTTGAATCCGT
GCGAGAGTGGGGCACTTTCTGCGACGAGCGCGATGCGCTGGCGCTGCGGT
TGTTGGTGGCCAGCAAGGCGAGTCACCTGCGGAAGTTGCAAATGGTAGAT
CGCCGGTTTTGCATGTGTCTGCTGAGCATTTTGAGCCAGCGTCCAGGCGT
GTTTGGCATGATGGTAGGGCATGATGGTCGACAGCGTGCTGCTTGCCCCC
TATGGCACGTGACGCAGACACACCTCTGCGTTAAATAATGTCACTGGCAC
TGGTGCAAGACCTCTAGCAATGCCATGGCGTGACACGTTCAGTCGGCGGT
CACACTGTTTGCAGCACGCAGTGAAACGCGAATCGCCACTCACTGCGTAC
AGCGAGCTGCAATGCGCTGCTGCCTGTTGTCAATGCCATCGCAGATGCTC
AATATGTGAAACCTGCGTCGCTGCAGCGTCTACATTCGCTATGCACGCCA
ACATCGCGTGACCTCAGTGTTGCAAAGGGGGTCTGTTCATTGGACAGCGT
AGTGACTGCAGCCTGGTTGACAACACCACATTGATGCTCTTGAGCACAAA
AACAGCGTCTGGTGATCATTCACTTCAAGCACAGCGTGTGATTGGCGTTC
ACTTCAAACACAGCTTACCACTCAAGCTGAGCTGCTTTGCACCACTTCTA
AGCTGCTGTGCTGCTCTTGCAGGCAGATTTGTTCGCGGACGGTGACGAAA
TGGAGCGCAGAAGAGAGGTGTACATTCACTGGTGTCTGGACCACGGTTTT
GAGTACATTGAGGCCAACTGCTGCCGACCAGATCTAGGTGAGTCACCTGA
ATGAATCATTTTGCCACCAGGCATGTGCGCGTGGGACGCACGCCCTTCAA
GGATGTGACTTCAACTTCTTCAACATCTGATTGGTTCATTCTACTGTTGG
CCTACTGGCTTGGCCCAATACGTTGACCATGGGTTGAGCACACAATACTG
CAACCTGGCTGCCCCTAACCGCATGACAGGTTGGCATGCGCTCTGTCATC
CGCCACACGCAGGTCGCCAGGCACACGACCAACTGCCACTCACATGCGCA
CATTTAAGCCTGGTTTCATCACTTCAACTGGCAGTTTCACCGTGCAGATA
CACTGTACACGCACACGCAAGCCCGCTCGCCGGTAACGATAACTGTTATG
ACTTCAATACCGCAACCTCATTGCCACTCGCCCTCATCTAGCCCGCACTG
CTGTCTACTTATTCCATGTCAACGGCAGCAGCGCTCCGCTCATTGTTTCG
GCTGAGCACTGACTGCAGCTTCTGCAGCAACGCTGGTCTTCAACTATCAC
TCTGCACACATGCCGCTGCGCGCATGCTCCATCCGGAGGCCCACCAGCTC
AGCGCGCAGCACCACTCAGCACATGTGACACATGCGGTACTCGTCGTTGC
TCGACTTGGTGCCTTCGCGTACGCCATGCCACGTGGCGCCGCGAGGGACC
ACCGCCCAATGCACAGCATCTGTCCACTAGAAACGTGCAAGATGTATCAC
ATGTTTCCCCATCGCTCAGCGCACCGCTATCGCATGCTGCGCGCCAGGCG
GCGACACGCGGGAGAAGGAGGGCGTCCCGCGCGTTGTGGAGGCGCTGCAG
TCTACTGCGTGGGCTTCAATAGGGGCGCCCGGCAGAGGGTTCAGCAGCGG
CGGCGGCGGCGGCGGGTTTGGAGCGCACGCTACTGCCGCGGTTGCGGGGG
GCTCAGGGGGGCTCGATGAGGATGGGGGGTCGGAGGAGGGGGGCGGCAGC
GGGGAGGAGGGGGAGTGGGACGACTTTGTGAGTGCGCTGCGCGGACATGT
CATTGCGGCTATGCCATGTCTTTTCCATGACCGCGCTACCTTAGAAGTCG
CCGCACTTCATCAGGTCCCATAGAATGGTGCAGTCTGCTGCACGGTCTGG
ACATCCCCATGGACCGGTGCTGGTATCACGTATGCCTATCTGTGCAATAA
TGTATTTTTTGCAATGCTGACATCCTTGAACATAGCAGCAAAATGGACAG
TACATTGAGATCCATAAACGCCGCCCTCCCTGCAGCATCACCAACCAAGC
GCGATCATTATGGACTTCAATCAAACCATCACTATGCATTTGCGACCGTT
GCGTTGCAGTGAGTGTGGCAGCATGCAAGCACGGCCAGCGCCGCCAGCAG
CTGCGAAGGTGCGCTTATTGCGGCCACGCGTTGCGCAGCCATTTAGATCT
CCTCGACCAGTTGCTGGGCTGCGCTGTGCATCGAGCAAGGGCTATATTCA
CCCAAGCCACGCTTGCTGCTGCTCTGCAGGGCGAAGGTGTGCCGCCGGCC
GGGTACGGCGCTCTTGATGATGGCAGCGATACAGATGCAGGGGCCGCCAG
TCCTAGTAGTGATGCACACTTGCCTGTTGACGATGGAGGCGACCACGGGG
GCTTTGTGGATGAAGCTGCAGTGGCGGCGGCGGCGGCGGCAGCGGCGGCG
GCGGAGGCGGAGGCGGCAGGGGAGAGCGTAGACTCCAAAACGCCGCATTT
ACCTCAAGTGAGTCTTACTCTGCATTTACCTTAAGTGAGTTGTAAGCGGT
TGCAGGGGCAAATGTATGGACTGCCGATCATGTTGGGTGCAGATAGCGCA
CCAGGTGAATGATCAAGCAGATGGCCTTGTCGCTCTCTTGAAGTTCGCTG
GCAGCTCCCTGTCGAGCGTGGTAGGTACAGCAACAGCATGGTCAGAAAGC
CAGCATGCCTGTGCTACCCCGAAATGAGTGTGTGTGGAGAGCAACACCAG
CAACATTGCAGGTACGGCGGTTTCATAACACCTTCTCACTGCGAACCGCA
CTGCTGGGTGACTACAGAATGGGCTTGTCTGCAAGCCCATACGCACACAG
ACATGAATGCACCCCAAATGGTCGATCACATGGCCACCACATGATCCTGC
AAACGTAGTGCGGACATGGTACAGAATTGGCAAATCACGTTCCAGGCATT
GGCAGACCTCAACAGCAAACATCGTATGACAGTATGCTGCTGGTACAGTA
CGCATGGACAATGTAGGCAGCTAGAGCATCAGTCAAGACCAGTATGGGTG
TACAACTACCCAGCATGGCCCATTGTGCCTGCTGGAGTATACCACAACAG
TGCCCGGCATCATAAACTTCACCGTGCAGCGCGAGAAACGCGACCCCGGT
TGCGTCACTCTGGCCTTGCTGGCGCTCCTACTACAGGAGGTGAACATGCT
GCAGCGCTGCTGGGATTCAGGGCCAATCGCACCAAGCATCACCCCACTCT
GCCCTTGCACATCGCTGCTTCGAAGCAAACAAACGTGCCGCTCACCCTCA
TCCTCACCGACACTAAAACCGCAGGCACACGTGGACACCGGCGCTGCACA
AGCGCAAGCGGACACCGCGACCCCTCCCGCGCCGCCGCAACACAGCGGCG
GCGCAACCGCCGGCGCCGGCGACCCGCTGTCACGCGCGCTGGGCGTCATG
CTCGACGCCGACGACGGCGGCGAGGAGCAGGGGCAGGGGGACGAAGGGGG
CGTGGAATTTGAGCGGCTGCTGTCGGCGGTTCACAGCGTGCGCCGCAGCG
TGCAGGTGGGGAGGGGGTCCGGCGGAGCGTCACTGCCTGCGCGCTTGAAG
TACGTTTGAAGTGTGCGGTTGTGGACATGGCACGCTGTGCCAGCTGTGTG
CCGCTTGCGGCCGTCACTCGCTGTGGATTGGCTTCATGTGTCCAACTGTA
GTCTGCTTGATGGTGTTACATGCTTGTTGAAGTGCCACGCAGTGTGTGAC
TCTGAGTGCAGACGACGTGTGCTGTGCCGCGCCCATTCGCGCAGGACTTG
CCCGACGCGCAGCGGCGCGATCAGGCCGCCGCCATGGCGCTGCGCATCAT
GGGTATGATGGGTATGGGCGCAGACGAAGAGGACAGCAGCGATGAAGACG
ACACGCACATGACCGCCAGCGACTCGCGACAACAATGAATTGAAGTTTTT
CACAAGGAAGTTGAA
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Coding sequence (CDS) from alignment at Contig_19:648131..653745+

>mRNA_5513 ID=mRNA_5513|Name=jgi.p|Trimin1|348069|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1395bp|location=Sequence derived from alignment at Contig_19:648131..653745+ (Tribonema minus UTEX_B_3156 )
ATGGGGCGGGCCCTGCCCCGCCCCTGGGACACGGTGGCGGCTGCCCCTCG
TGGAGGTGAGGACGTGCTTCTGGAAGCAGCTGGCGCAAGATTCGCGCAAC
ACGCGTGGCCGCTGCACACCAAATACTATTCCACGCAGATACGCTTTTGG
GAGCAGCGGGAGCTGCCATCCATATCAGCGGTGCACGAGGATGGAGCCAT
ACATGCTGCGGCGGGAGAGCATGGAGTAGAGGGCATCATTGCCGTGTTTG
ACGTCACCCAGGATGATGCATTTGAATCCGTGCGAGAGTGGGGCACTTTC
TGCGACGAGCGCGATGCGCTGGCGCTGCGGTTGTTGGTGGCCAGCAAGGC
GAGTCACCTGCGGAAGTTGCAAATGGCAGATTTGTTCGCGGACGGTGACG
AAATGGAGCGCAGAAGAGAGGTGTACATTCACTGGTGTCTGGACCACGGT
TTTGAGTACATTGAGGCCAACTGCTGCCGACCAGATCTAGGCGGCGACAC
GCGGGAGAAGGAGGGCGTCCCGCGCGTTGTGGAGGCGCTGCAGTCTACTG
CGTGGGCTTCAATAGGGGCGCCCGGCAGAGGGTTCAGCAGCGGCGGCGGC
GGCGGCGGGTTTGGAGCGCACGCTACTGCCGCGGTTGCGGGGGGCTCAGG
GGGGCTCGATGAGGATGGGGGGTCGGAGGAGGGGGGCGGCAGCGGGGAGG
AGGGGGAGTGGGACGACTTTGGCGAAGGTGTGCCGCCGGCCGGGTACGGC
GCTCTTGATGATGGCAGCGATACAGATGCAGGGGCCGCCAGTCCTAGTAG
TGATGCACACTTGCCTGTTGACGATGGAGGCGACCACGGGGGCTTTGTGG
ATGAAGCTGCAGTGGCGGCGGCGGCGGCGGCAGCGGCGGCGGCGGAGGCG
GAGGCGGCAGGGGAGAGCTATACCACAACAGTGCCCGGCATCATAAACTT
CACCGTGCAGCGCGAGAAACGCGACCCCGGTTGCGTCACTCTGGCCTTGC
TGGCGCTCCTACTACAGGAGGCACACGTGGACACCGGCGCTGCACAAGCG
CAAGCGGACACCGCGACCCCTCCCGCGCCGCCGCAACACAGCGGCGGCGC
AACCGCCGGCGCCGGCGACCCGCTGTCACGCGCGCTGGGCGTCATGCTCG
ACGCCGACGACGGCGGCGAGGAGCAGGGGCAGGGGGACGAAGGGGGCGTG
GAATTTGAGCGGCTGCTGTCGGCGGTTCACAGCGTGCGCCGCAGCGTGCA
GGACTTGCCCGACGCGCAGCGGCGCGATCAGGCCGCCGCCATGGCGCTGC
GCATCATGGGTATGATGGGTATGGGCGCAGACGAAGAGGACAGCAGCGAT
GAAGACGACACGCACATGACCGCCAGCGACTCGCGACAACAATGA
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