mRNA_5464 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	jgi.p\|Trimin1\|348046
Unique Name	mRNA_5464
Type	mRNA
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )

Homology

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BLAST of jgi.p|Trimin1|348046 vs. uniprot
Match: A0A835Z400_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z400_9STRA)

HSP 1 Score: 561 bits (1445), Expect = 6.770e-193
Identity = 529/529 (100.00%), Postives = 529/529 (100.00%), Query Frame = 1

Query:    1 MARLEKKLNKWKKRKALRKALATTRPNTPDPLAPAAAPEAAAALAKATAFQPRIVRSLSCSALTNQVCLKHDGGRIDAVAARERAFQAAFAAANAHRTSASLPFPSITLVTTPSSQQTPTASVSAPAPPKEHKAGKDKRHPKKLLPPPXTPIAAAPAVAVAPPRPVTAALQWAQSVVTAAVQVPAAARXXXXXXXXXXXXXXXXXXXXXXXXXXXXHPTGPRAVAAPAGRPAAARQPLHAAQHAPAPLAQVPTKPAVKTXXXXXXXXXXXXXXXXXXXXXAPLKPAVAVGPVQRDAGAGSXXXXXXXXXXXXXXXXXXXXXXXXXXXARAMPFNSAQRPSAALHGLQQRQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSAAAKERSGGVAEDRTRVFAAACFAVPATAEFAGDTAAAALHDGGGGXSNXXXAAGSVNGXXXXXXXXXXXXXXXXXXXXXXXXXXGKGRGARAAPGVAAXXXXXXXXXXGTAKAAPSN 1587
            MARLEKKLNKWKKRKALRKALATTRPNTPDPLAPAAAPEAAAALAKATAFQPRIVRSLSCSALTNQVCLKHDGGRIDAVAARERAFQAAFAAANAHRTSASLPFPSITLVTTPSSQQTPTASVSAPAPPKEHKAGKDKRHPKKLLPPPXTPIAAAPAVAVAPPRPVTAALQWAQSVVTAAVQVPAAARXXXXXXXXXXXXXXXXXXXXXXXXXXXXHPTGPRAVAAPAGRPAAARQPLHAAQHAPAPLAQVPTKPAVKTXXXXXXXXXXXXXXXXXXXXXAPLKPAVAVGPVQRDAGAGSXXXXXXXXXXXXXXXXXXXXXXXXXXXARAMPFNSAQRPSAALHGLQQRQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSAAAKERSGGVAEDRTRVFAAACFAVPATAEFAGDTAAAALHDGGGGXSNXXXAAGSVNGXXXXXXXXXXXXXXXXXXXXXXXXXXGKGRGARAAPGVAAXXXXXXXXXXGTAKAAPSN
Sbjct:    1 MARLEKKLNKWKKRKALRKALATTRPNTPDPLAPAAAPEAAAALAKATAFQPRIVRSLSCSALTNQVCLKHDGGRIDAVAARERAFQAAFAAANAHRTSASLPFPSITLVTTPSSQQTPTASVSAPAPPKEHKAGKDKRHPKKLLPPPXTPIAAAPAVAVAPPRPVTAALQWAQSVVTAAVQVPAAARXXXXXXXXXXXXXXXXXXXXXXXXXXXXHPTGPRAVAAPAGRPAAARQPLHAAQHAPAPLAQVPTKPAVKTXXXXXXXXXXXXXXXXXXXXXAPLKPAVAVGPVQRDAGAGSXXXXXXXXXXXXXXXXXXXXXXXXXXXARAMPFNSAQRPSAALHGLQQRQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSAAAKERSGGVAEDRTRVFAAACFAVPATAEFAGDTAAAALHDGGGGXSNXXXAAGSVNGXXXXXXXXXXXXXXXXXXXXXXXXXXGKGRGARAAPGVAAXXXXXXXXXXGTAKAAPSN 529

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|348046 vs. uniprot

BLAST of jgi.p|Trimin1|348046 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A835Z400_9STRA	6.770e-193	100.00	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_19	contig	Contig_19:156760..159475 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Properties


Property Name	Value
ProteomeId	Trimin1\|348046\|estExt_Genemark1.C_Ctg_190021
Hectar predicted targeting category	other localisation
TranscriptId	348368
Track	FilteredModels1
ProteinId	348046

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|348046	gene_5464	Tribonema minus UTEX_B_3156	gene	Contig_19 156760..159475 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
exon_5464_1	exon_5464_1	Tribonema minus UTEX_B_3156	exon	Contig_19 156760..156777 +
exon_5464_2	exon_5464_2	Tribonema minus UTEX_B_3156	exon	Contig_19 157707..159475 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
CDS_5464	CDS_5464	Tribonema minus UTEX_B_3156	CDS	Contig_19 156760..156777 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
UTR3_5464	UTR3_5464	Tribonema minus UTEX_B_3156	three_prime_UTR	Contig_19 159279..159475 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|348046	Trimin1\|348046\|estExt_Genemark1.C_Ctg_190021	Tribonema minus UTEX_B_3156	polypeptide	Contig_19 156760..159278 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Contig_19:156760..159475+
coding sequence from alignment at Contig_19:156760..159475+

spliced messenger RNA

>mRNA_5464 ID=mRNA_5464|Name=jgi.p|Trimin1|348046|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1787bp|location=Sequence derived from alignment at Contig_19:156760..159475+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCAGGCTGGAGAAGAAGCTCAACAAGTGGAAGAAACGGAAAGCACT
GCGCAAGGCCCTCGCCACAACTAGACCCAATACCCCGGATCCTCTGGCGC
CGGCAGCAGCGCCAGAGGCAGCAGCAGCGCTTGCCAAGGCCACTGCGTTT
CAGCCTCGGATCGTCAGGTCTCTATCATGTAGCGCCCTTACCAATCAGGT
CTGCCTGAAGCACGACGGTGGTCGAATCGATGCGGTGGCAGCTCGGGAGA
GGGCCTTTCAAGCGGCCTTCGCGGCAGCCAACGCGCACCGCACCAGCGCC
AGCCTCCCCTTCCCGTCCATCACGCTGGTGACCACGCCCTCCTCTCAACA
AACCCCCACCGCCAGCGTCTCTGCACCAGCGCCGCCTAAGGAGCACAAGG
CGGGCAAAGACAAACGGCACCCAAAGAAGCTCCTGCCGCCGCCGCCCACC
CCCATCGCCGCAGCCCCAGCCGTTGCCGTCGCGCCGCCCCGGCCGGTCAC
CGCGGCGCTGCAGTGGGCGCAGTCGGTGGTGACGGCGGCGGTGCAGGTCC
CCGCTGCCGCGCGCCCCATGGCAGCAGCAGCAGCGCAGCAAGCGGCGCCG
AAACCCGCAGCAACACCCTCGCCAACGCCCGCTCCGGCCGCGAAGCCGCA
CCCGACAGGTCCTCGCGCGGTCGCTGCGCCCGCCGGTCGGCCGGCGGCGG
CACGGCAGCCGCTGCACGCAGCGCAGCACGCCCCTGCGCCGCTTGCGCAA
GTGCCCACCAAGCCTGCCGTCAAGACGGCTGCTGCTGCCGCCGCCATGCG
TCACCCGTCAGCATCACAGCCCACGGCGGCGGCGGCGGCTGCGCCGCTCA
AGCCTGCTGTTGCTGTCGGGCCTGTGCAGCGCGACGCCGGCGCAGGGAGC
GCCGCCGCCGCTGCCACTGCGCAGCTGGCAGCCGCTGCCGCAGCGCCAGT
CGCGGCGCGCGCCGCCGCCGCCGCCGTGCCCGCCCGGGCGATGCCGTTCA
ACAGCGCACAACGCCCGAGCGCTGCCCTGCATGGACTGCAGCAGCGCCAG
CAGCAGCAGGGGGCGGCGCATGCGCAGGGTGCTGCTGCAGCAGCGGCGGC
GGCGGAGGCGCAGCCTTTCAGTGAGGCCGCCGGCGCCGCCGCGTTGAAGT
TCAGGCGCCAGTTCCCCGTGCCGCAGCCGCTGTCGGCTGCTGCCGCCGCC
GGGGCACAGGCACCCGCTGCTGCTGCCAGAAGTGCCGCCGCAAAGGAGCG
CAGCGGCGGTGTCGCAGAGGACCGCACGCGCGTGTTTGCTGCTGCGTGTT
TTGCTGTGCCCGCAACGGCCGAGTTCGCGGGCGACACTGCTGCTGCCGCC
CTTCATGACGGCGGCGGCGGCGGCAGCAACGGCAGCAGCGCCGCCGGCAG
CGTGAACGGCGGCGCCAGCAGCGGCAGCGGCAGCGGCGCCGCCAAGGGCA
AGGGCAAGCAGTACAAGAAGAAGTGGCACAACAAGTGGGGGAAGGGACGC
GGAGCGCGGGCCGCGCCCGGCGTGGCAGCAGCGGCGGCGCCGCCGGCAGC
AGCGGCGGGTGGCACAGCCAAGGCGGCGCCATCGAACTAGACAGGCGACT
TGTGGGGGTGCCATACGAGGAGCGCGCCGCCACAGCCATACAGTAGAAAG
GAGAAAAAGCCGCGTTGGAGACAGGAGCCGGGAAAAGGGGAAAAGGGGGC
GAACGGTGTCCTCTGCTGCCAGGACATTGTTGGAGTGTGTGGGGGCCCGG
GGGGGGGGGGGGGGGGACTCGCGCTCAGAGAAAATTT

protein sequence of jgi.p|Trimin1|348046

>Trimin1|348046|estExt_Genemark1.C_Ctg_190021 ID=Trimin1|348046|estExt_Genemark1.C_Ctg_190021|Name=jgi.p|Trimin1|348046|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=530bp
MARLEKKLNKWKKRKALRKALATTRPNTPDPLAPAAAPEAAAALAKATAF
QPRIVRSLSCSALTNQVCLKHDGGRIDAVAARERAFQAAFAAANAHRTSA
SLPFPSITLVTTPSSQQTPTASVSAPAPPKEHKAGKDKRHPKKLLPPPPT
PIAAAPAVAVAPPRPVTAALQWAQSVVTAAVQVPAAARPMAAAAAQQAAP
KPAATPSPTPAPAAKPHPTGPRAVAAPAGRPAAARQPLHAAQHAPAPLAQ
VPTKPAVKTAAAAAAMRHPSASQPTAAAAAAPLKPAVAVGPVQRDAGAGS
AAAAATAQLAAAAAAPVAARAAAAAVPARAMPFNSAQRPSAALHGLQQRQ
QQQGAAHAQGAAAAAAAAEAQPFSEAAGAAALKFRRQFPVPQPLSAAAAA
GAQAPAAAARSAAAKERSGGVAEDRTRVFAAACFAVPATAEFAGDTAAAA
LHDGGGGGSNGSSAAGSVNGGASSGSGSGAAKGKGKQYKKKWHNKWGKGR
GARAAPGVAAAAAPPAAAAGGTAKAAPSN*

mRNA from alignment at Contig_19:156760..159475+

Legend: exonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_5464 ID=mRNA_5464|Name=jgi.p|Trimin1|348046|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2716bp|location=Sequence derived from alignment at Contig_19:156760..159475+ (Tribonema minus UTEX_B_3156 )
ATGGCCAGGCTGGAGAAGGTGCATTTGGGGCTGCTTCTGGCTCTTTGTCC
TGCTTTCCCTCTTTGCAGATGATACGCCAAGCAGTGCGTGGAGCCGCCAT
TGGCTCATTGCACAGGTATTGGTCAACTTGATAAAGCTCCCAATTCTCAT
ACTTGAGAAGTATCCCCACTTGTGGCCAGATCCGGACGTGCGCCTTGCAG
TAAGCTGCGCCAGGCGGCCTCCTGCGAGGAACCTAGTACATTGGTGACAG
TCTAATAAACACATCCTACTGCTGCTGAACCGCACCTCAGCAGAGATGGC
GAGGTCTTGCAGCTGCCAGGTGTGCCAACTGAGGAAGTGATCCAAGATCT
TGTCTCAAGCCTGGACCTGTGTCAAGGCATCAATTGTTCATAACCCGCTT
GCGGCATCGTGGCTATGGAGCACGTTGGCACCGGACACCATAGCACTCAG
GAAGCTTTCATTGCAGTCCTATTCACACTTTCGATTGGCAGTTACACTTT
CCGACGGTTGCGCGGGTAAAAAAAAAAATCAATCACATCACGAGCCATAT
AGATAGCATGGTGTCGAGTGAGAGCGTTGGAGCGGTTCGGAGAGCTGCTG
GGGACGCCATGTCTGGCAACAATTCACACCACCACCTCGTTGATGCAATT
TACGCCAAGCAAATCCAAACTCAGGGTTCTGCCGGCGCCAACCCTGTGCA
CCAGCAACAGCACGCCAACAACAAGCCCAAAGGCAAGCAGTGGGGCAAGA
AGAGGAAGGGTCAGCAGCAGAATGAGCCTCAGAACCAGGACGCCCACCGG
CAGCACCAGCAGCGAACGTCAACGCCAACTGTGGCAAATCCAGTTCTGTT
GAAGGCACCCGCCAACGCAACAACAGCAGGTGCAGCCCCAATGCCAGCGA
ATCATCAGGCTCCTGAGCAGCATCAAACGAACCCTGCTGCGCCGCAGAAG
CTCAACAAGTGGAAGAAACGGAAAGCACTGCGCAAGGCCCTCGCCACAAC
TAGACCCAATACCCCGGATCCTCTGGCGCCGGCAGCAGCGCCAGAGGCAG
CAGCAGCGCTTGCCAAGGCCACTGCGTTTCAGCCTCGGATCGTCAGGTCT
CTATCATGTAGCGCCCTTACCAATCAGGTCTGCCTGAAGCACGACGGTGG
TCGAATCGATGCGGTGGCAGCTCGGGAGAGGGCCTTTCAAGCGGCCTTCG
CGGCAGCCAACGCGCACCGCACCAGCGCCAGCCTCCCCTTCCCGTCCATC
ACGCTGGTGACCACGCCCTCCTCTCAACAAACCCCCACCGCCAGCGTCTC
TGCACCAGCGCCGCCTAAGGAGCACAAGGCGGGCAAAGACAAACGGCACC
CAAAGAAGCTCCTGCCGCCGCCGCCCACCCCCATCGCCGCAGCCCCAGCC
GTTGCCGTCGCGCCGCCCCGGCCGGTCACCGCGGCGCTGCAGTGGGCGCA
GTCGGTGGTGACGGCGGCGGTGCAGGTCCCCGCTGCCGCGCGCCCCATGG
CAGCAGCAGCAGCGCAGCAAGCGGCGCCGAAACCCGCAGCAACACCCTCG
CCAACGCCCGCTCCGGCCGCGAAGCCGCACCCGACAGGTCCTCGCGCGGT
CGCTGCGCCCGCCGGTCGGCCGGCGGCGGCACGGCAGCCGCTGCACGCAG
CGCAGCACGCCCCTGCGCCGCTTGCGCAAGTGCCCACCAAGCCTGCCGTC
AAGACGGCTGCTGCTGCCGCCGCCATGCGTCACCCGTCAGCATCACAGCC
CACGGCGGCGGCGGCGGCTGCGCCGCTCAAGCCTGCTGTTGCTGTCGGGC
CTGTGCAGCGCGACGCCGGCGCAGGGAGCGCCGCCGCCGCTGCCACTGCG
CAGCTGGCAGCCGCTGCCGCAGCGCCAGTCGCGGCGCGCGCCGCCGCCGC
CGCCGTGCCCGCCCGGGCGATGCCGTTCAACAGCGCACAACGCCCGAGCG
CTGCCCTGCATGGACTGCAGCAGCGCCAGCAGCAGCAGGGGGCGGCGCAT
GCGCAGGGTGCTGCTGCAGCAGCGGCGGCGGCGGAGGCGCAGCCTTTCAG
TGAGGCCGCCGGCGCCGCCGCGTTGAAGTTCAGGCGCCAGTTCCCCGTGC
CGCAGCCGCTGTCGGCTGCTGCCGCCGCCGGGGCACAGGCACCCGCTGCT
GCTGCCAGAAGTGCCGCCGCAAAGGAGCGCAGCGGCGGTGTCGCAGAGGA
CCGCACGCGCGTGTTTGCTGCTGCGTGTTTTGCTGTGCCCGCAACGGCCG
AGTTCGCGGGCGACACTGCTGCTGCCGCCCTTCATGACGGCGGCGGCGGC
GGCAGCAACGGCAGCAGCGCCGCCGGCAGCGTGAACGGCGGCGCCAGCAG
CGGCAGCGGCAGCGGCGCCGCCAAGGGCAAGGGCAAGCAGTACAAGAAGA
AGTGGCACAACAAGTGGGGGAAGGGACGCGGAGCGCGGGCCGCGCCCGGC
GTGGCAGCAGCGGCGGCGCCGCCGGCAGCAGCGGCGGGTGGCACAGCCAA
GGCGGCGCCATCGAACTAGACAGGCGACTTGTGGGGGTGCCATACGAGGA
GCGCGCCGCCACAGCCATACAGTAGAAAGGAGAAAAAGCCGCGTTGGAGA
CAGGAGCCGGGAAAAGGGGAAAAGGGGGCGAACGGTGTCCTCTGCTGCCA
GGACATTGTTGGAGTGTGTGGGGGCCCGGGGGGGGGGGGGGGGGGACTCG
CGCTCAGAGAAAATTT

Coding sequence (CDS) from alignment at Contig_19:156760..159475+

>mRNA_5464 ID=mRNA_5464|Name=jgi.p|Trimin1|348046|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1590bp|location=Sequence derived from alignment at Contig_19:156760..159475+ (Tribonema minus UTEX_B_3156 )
ATGGCCAGGCTGGAGAAGAAGCTCAACAAGTGGAAGAAACGGAAAGCACT
GCGCAAGGCCCTCGCCACAACTAGACCCAATACCCCGGATCCTCTGGCGC
CGGCAGCAGCGCCAGAGGCAGCAGCAGCGCTTGCCAAGGCCACTGCGTTT
CAGCCTCGGATCGTCAGGTCTCTATCATGTAGCGCCCTTACCAATCAGGT
CTGCCTGAAGCACGACGGTGGTCGAATCGATGCGGTGGCAGCTCGGGAGA
GGGCCTTTCAAGCGGCCTTCGCGGCAGCCAACGCGCACCGCACCAGCGCC
AGCCTCCCCTTCCCGTCCATCACGCTGGTGACCACGCCCTCCTCTCAACA
AACCCCCACCGCCAGCGTCTCTGCACCAGCGCCGCCTAAGGAGCACAAGG
CGGGCAAAGACAAACGGCACCCAAAGAAGCTCCTGCCGCCGCCGCCCACC
CCCATCGCCGCAGCCCCAGCCGTTGCCGTCGCGCCGCCCCGGCCGGTCAC
CGCGGCGCTGCAGTGGGCGCAGTCGGTGGTGACGGCGGCGGTGCAGGTCC
CCGCTGCCGCGCGCCCCATGGCAGCAGCAGCAGCGCAGCAAGCGGCGCCG
AAACCCGCAGCAACACCCTCGCCAACGCCCGCTCCGGCCGCGAAGCCGCA
CCCGACAGGTCCTCGCGCGGTCGCTGCGCCCGCCGGTCGGCCGGCGGCGG
CACGGCAGCCGCTGCACGCAGCGCAGCACGCCCCTGCGCCGCTTGCGCAA
GTGCCCACCAAGCCTGCCGTCAAGACGGCTGCTGCTGCCGCCGCCATGCG
TCACCCGTCAGCATCACAGCCCACGGCGGCGGCGGCGGCTGCGCCGCTCA
AGCCTGCTGTTGCTGTCGGGCCTGTGCAGCGCGACGCCGGCGCAGGGAGC
GCCGCCGCCGCTGCCACTGCGCAGCTGGCAGCCGCTGCCGCAGCGCCAGT
CGCGGCGCGCGCCGCCGCCGCCGCCGTGCCCGCCCGGGCGATGCCGTTCA
ACAGCGCACAACGCCCGAGCGCTGCCCTGCATGGACTGCAGCAGCGCCAG
CAGCAGCAGGGGGCGGCGCATGCGCAGGGTGCTGCTGCAGCAGCGGCGGC
GGCGGAGGCGCAGCCTTTCAGTGAGGCCGCCGGCGCCGCCGCGTTGAAGT
TCAGGCGCCAGTTCCCCGTGCCGCAGCCGCTGTCGGCTGCTGCCGCCGCC
GGGGCACAGGCACCCGCTGCTGCTGCCAGAAGTGCCGCCGCAAAGGAGCG
CAGCGGCGGTGTCGCAGAGGACCGCACGCGCGTGTTTGCTGCTGCGTGTT
TTGCTGTGCCCGCAACGGCCGAGTTCGCGGGCGACACTGCTGCTGCCGCC
CTTCATGACGGCGGCGGCGGCGGCAGCAACGGCAGCAGCGCCGCCGGCAG
CGTGAACGGCGGCGCCAGCAGCGGCAGCGGCAGCGGCGCCGCCAAGGGCA
AGGGCAAGCAGTACAAGAAGAAGTGGCACAACAAGTGGGGGAAGGGACGC
GGAGCGCGGGCCGCGCCCGGCGTGGCAGCAGCGGCGGCGCCGCCGGCAGC
AGCGGCGGGTGGCACAGCCAAGGCGGCGCCATCGAACTAG