mRNA_5444 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|164329
Unique NamemRNA_5444
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|164329 vs. uniprot
Match: A0A835YY01_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YY01_9STRA)

HSP 1 Score: 276 bits (707), Expect = 2.220e-94
Identity = 132/132 (100.00%), Postives = 132/132 (100.00%), Query Frame = 1 
Query:    1 METPCHTAGDIGRRVRDVARQLQSTALAAGTRKHYDSAWRFWAEWRQLAGLPLYLTGSDTAADARALRDFAAYCFHEHGNSAGTIEGKLSAIRYHHLIPEHGPGVDLKPHKIITDVLRGIGRRTAAPERRAP 396
            METPCHTAGDIGRRVRDVARQLQSTALAAGTRKHYDSAWRFWAEWRQLAGLPLYLTGSDTAADARALRDFAAYCFHEHGNSAGTIEGKLSAIRYHHLIPEHGPGVDLKPHKIITDVLRGIGRRTAAPERRAP
Sbjct:    1 METPCHTAGDIGRRVRDVARQLQSTALAAGTRKHYDSAWRFWAEWRQLAGLPLYLTGSDTAADARALRDFAAYCFHEHGNSAGTIEGKLSAIRYHHLIPEHGPGVDLKPHKIITDVLRGIGRRTAAPERRAP 132
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BLAST of jgi.p|Trimin1|164329 vs. uniprot
Match: A0A836CHG6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHG6_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 4.310e-14
Identity = 33/45 (73.33%), Postives = 40/45 (88.89%), Query Frame = 1 
Query:  262 KLSAIRYHHLIPEHGPGVDLKPHKIITDVLRGIGRRTAAPERRAP 396
            KL+AIRYHHLIP+HGPGVDL+PH+I+  VLRGI R+TA P+RR P
Sbjct:  119 KLAAIRYHHLIPDHGPGVDLQPHRIVAGVLRGIARQTAPPKRRLP 163
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|164329 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A835YY01_9STRA2.220e-94100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A836CHG6_9STRA4.310e-1473.33Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_30contigContig_30:1088829..1089224 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|164329|e_gw1.30.221.1
Max annot lvl115417.EPrPW00000024214|-
EggNOG OGs2D1H6@1|root,2SI42@2759|Eukaryota
Evalue4.37e-07
Seed ortholog115417.EPrPW00000024214
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-00_003870.1
TranscriptId164651
TrackFilteredModels1
ProteinId164329
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|164329gene_5444Tribonema minus UTEX_B_3156 geneContig_30 1088829..1089224 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_5444_1exon_5444_1Tribonema minus UTEX_B_3156 exonContig_30 1088829..1089224 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_5444CDS_5444Tribonema minus UTEX_B_3156 CDSContig_30 1088829..1089224 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|164329Trimin1|164329|e_gw1.30.221.1Tribonema minus UTEX_B_3156 polypeptideContig_30 1088829..1089224 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_5444 ID=mRNA_5444|Name=jgi.p|Trimin1|164329|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=396bp|location=Sequence derived from alignment at Contig_30:1088829..1089224- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGAAACGCCTTGCCATACCGCAGGAGATATCGGACGTCGTGTTCGGGA
TGTTGCGCGGCAACTGCAGTCTACAGCACTGGCTGCAGGCACCCGCAAAC
ACTACGACTCAGCCTGGCGTTTTTGGGCCGAGTGGCGGCAACTTGCAGGG
CTACCGCTCTATCTCACCGGCAGCGACACTGCCGCCGACGCCCGCGCCCT
CCGCGACTTCGCCGCTTACTGTTTCCATGAGCACGGTAACAGTGCGGGCA
CCATCGAAGGGAAGCTCTCAGCTATACGATACCACCACCTCATTCCGGAG
CACGGACCTGGGGTGGACCTTAAGCCGCACAAAATCATCACCGATGTGCT
GCGCGGCATCGGGCGGCGAACCGCTGCGCCGGAGCGGCGCGCACCC
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protein sequence of jgi.p|Trimin1|164329

>Trimin1|164329|e_gw1.30.221.1 ID=Trimin1|164329|e_gw1.30.221.1|Name=jgi.p|Trimin1|164329|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=132bp
METPCHTAGDIGRRVRDVARQLQSTALAAGTRKHYDSAWRFWAEWRQLAG
LPLYLTGSDTAADARALRDFAAYCFHEHGNSAGTIEGKLSAIRYHHLIPE
HGPGVDLKPHKIITDVLRGIGRRTAAPERRAP
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mRNA from alignment at Contig_30:1088829..1089224-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5444 ID=mRNA_5444|Name=jgi.p|Trimin1|164329|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=396bp|location=Sequence derived from alignment at Contig_30:1088829..1089224- (Tribonema minus UTEX_B_3156 )
ATGGAAACGCCTTGCCATACCGCAGGAGATATCGGACGTCGTGTTCGGGA
TGTTGCGCGGCAACTGCAGTCTACAGCACTGGCTGCAGGCACCCGCAAAC
ACTACGACTCAGCCTGGCGTTTTTGGGCCGAGTGGCGGCAACTTGCAGGG
CTACCGCTCTATCTCACCGGCAGCGACACTGCCGCCGACGCCCGCGCCCT
CCGCGACTTCGCCGCTTACTGTTTCCATGAGCACGGTAACAGTGCGGGCA
CCATCGAAGGGAAGCTCTCAGCTATACGATACCACCACCTCATTCCGGAG
CACGGACCTGGGGTGGACCTTAAGCCGCACAAAATCATCACCGATGTGCT
GCGCGGCATCGGGCGGCGAACCGCTGCGCCGGAGCGGCGCGCACCC
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Coding sequence (CDS) from alignment at Contig_30:1088829..1089224-

>mRNA_5444 ID=mRNA_5444|Name=jgi.p|Trimin1|164329|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=396bp|location=Sequence derived from alignment at Contig_30:1088829..1089224- (Tribonema minus UTEX_B_3156 )
ATGGAAACGCCTTGCCATACCGCAGGAGATATCGGACGTCGTGTTCGGGA
TGTTGCGCGGCAACTGCAGTCTACAGCACTGGCTGCAGGCACCCGCAAAC
ACTACGACTCAGCCTGGCGTTTTTGGGCCGAGTGGCGGCAACTTGCAGGG
CTACCGCTCTATCTCACCGGCAGCGACACTGCCGCCGACGCCCGCGCCCT
CCGCGACTTCGCCGCTTACTGTTTCCATGAGCACGGTAACAGTGCGGGCA
CCATCGAAGGGAAGCTCTCAGCTATACGATACCACCACCTCATTCCGGAG
CACGGACCTGGGGTGGACCTTAAGCCGCACAAAATCATCACCGATGTGCT
GCGCGGCATCGGGCGGCGAACCGCTGCGCCGGAGCGGCGCGCACCC
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