mRNA_5411 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|164331 vs. uniprot
Match: A0A836CDT2_9STRA (TLC domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDT2_9STRA) HSP 1 Score: 697 bits (1800), Expect = 1.840e-253 Identity = 358/358 (100.00%), Postives = 358/358 (100.00%), Query Frame = 1 Query: 1 MSDQIDDALIAAAAFVAFWLLFIGTWWLSTRYGQYGFEQYTAKEKAEWCARISSTVHASIVVPGVIACLIENKWSSDSIAFTSPAGCRAIFSVSIGYFLQDLGALIWWRLQHWQATAFVAHHLVALTPYCINNFVSGCHCGNYVLALFLLVEIPTLPLNCVGTLDQLGLRQSHARYLCFLVMYSSWFLARVLLPVYLLIVLYEIIIPSWYSDRGGAQFAVCVVPSAVCANVIAFACFYIFLAQLSLDLFHECIGDRPNLKTLQDDSSRSPVTGRFGGLEPALRALEGGGGSAANAERLPLLGHRALAAQGXXXXXXXXXXXXXEFYGESLACAADCAWSSKSCAVRGVRDGAQCHVVC 1074 MSDQIDDALIAAAAFVAFWLLFIGTWWLSTRYGQYGFEQYTAKEKAEWCARISSTVHASIVVPGVIACLIENKWSSDSIAFTSPAGCRAIFSVSIGYFLQDLGALIWWRLQHWQATAFVAHHLVALTPYCINNFVSGCHCGNYVLALFLLVEIPTLPLNCVGTLDQLGLRQSHARYLCFLVMYSSWFLARVLLPVYLLIVLYEIIIPSWYSDRGGAQFAVCVVPSAVCANVIAFACFYIFLAQLSLDLFHECIGDRPNLKTLQDDSSRSPVTGRFGGLEPALRALEGGGGSAANAERLPLLGHRALAAQGXXXXXXXXXXXXXEFYGESLACAADCAWSSKSCAVRGVRDGAQCHVVC Sbjct: 1 MSDQIDDALIAAAAFVAFWLLFIGTWWLSTRYGQYGFEQYTAKEKAEWCARISSTVHASIVVPGVIACLIENKWSSDSIAFTSPAGCRAIFSVSIGYFLQDLGALIWWRLQHWQATAFVAHHLVALTPYCINNFVSGCHCGNYVLALFLLVEIPTLPLNCVGTLDQLGLRQSHARYLCFLVMYSSWFLARVLLPVYLLIVLYEIIIPSWYSDRGGAQFAVCVVPSAVCANVIAFACFYIFLAQLSLDLFHECIGDRPNLKTLQDDSSRSPVTGRFGGLEPALRALEGGGGSAANAERLPLLGHRALAAQGXXXXXXXXXXXXXEFYGESLACAADCAWSSKSCAVRGVRDGAQCHVVC 358
BLAST of jgi.p|Trimin1|164331 vs. uniprot
Match: D8LDE1_ECTSI (TLC domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LDE1_ECTSI) HSP 1 Score: 166 bits (421), Expect = 2.440e-45 Identity = 110/287 (38.33%), Postives = 153/287 (53.31%), Query Frame = 1 Query: 31 AAAAFVAFWLLFIGTWWLSTRYGQYGFEQYTAKEKAEWCARISSTVHASIVVPGVIACLIENKWSSDSIAFTSPAGCRAI----FSVSIGYFLQDLGALIWWRLQHWQATAFVAHHLVALTPYCINNFVSGCHCGNYVLALFLLVEIPTLPLNCVGTLDQLGLRQSHARYLCFLVMYSSWFLARVLLPVYLLIVLYEIIIPSWYSDRGGAQFAVCVVPSAVCANVIAFACFYIFLAQLSLDLFHEC-IGDR--PNLKTLQDDSSRSPVTGRFGGLEPALRALEGGGG 870 A FV L+F W LS + F + KA+W ARI+ST+HA +V V CL+ + ++ P G + FS+SIGYFL DL ++WW L W T FVAHH+VALTPY I F CH G YVL LFLLVE T+PLN + L+ LG R++ + MYS WF+ R+LLP+YLL++++ I + ++ C+VPS VCA++IA C +F L+ +++ GD+ PN+ T G A A+E GGG Sbjct: 17 AVVTFVCAGLIFRLGWKLSEA-RVWRFNSFADVNKADWSARINSTIHAGLVCTLVTICLLTMSFDPVTLV---PLGSTVLLEITFSISIGYFLFDLSVILWWMLPMW--TVFVAHHVVALTPYVITQFFYTCHQGQYVLLLFLLVEASTMPLNAMAFLEDLGRRRTPEHRIAHGAMYSLWFVFRILLPLYLLLLIWTKIAQNISTEEA------CLVPSMVCAHIIAVFCIGVFFFLLTPEVYCRIKYGDKDDPNVDTTS-----------VGAASSAPGAMELGGG 280
BLAST of jgi.p|Trimin1|164331 vs. uniprot
Match: K3W7E3_GLOUD (TLC domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3W7E3_GLOUD) HSP 1 Score: 161 bits (407), Expect = 1.910e-43 Identity = 92/227 (40.53%), Postives = 135/227 (59.47%), Query Frame = 1 Query: 46 VAFWL-LFIGTWWLSTRYGQYGFEQYTAKEKAEWCARISSTVHASIVVPGVIACLIENKWSSDSIAFTSPAGCRAIFSVSIGYFLQDLGALIWWRLQHWQATAFVAHHLVALTPYCINNFVSGCHCGNYVLALFLLVEIPTLPLNCVGTLDQLGLRQSHARYLCFLVMYSSWFLARVLLPVYLLIVLYEIIIPSWYSDRGGAQFAVCVVPSAVCANVIAFACFYIFL 723 +A W LF+ LS RY + ++ E+ +WC+R++ST+HA I+V G++ ++ +W D + S A+FS S GYFL DL L+ W++ W+ FV HH+VA PY I NF +GC Y+L+LFLLVE+ +PLN L+QLG ++ L F Y WF ARV+LP+Y + VL+E IIP + A F CV+P+AVC ++IA C +F+ Sbjct: 16 MALWTALFVAGSRLSARYVPV-YRDFSKAEQGDWCSRVNSTIHAVIIVVGMLTTVLRQQWDEDLMPLRSTTAATALFSFSCGYFLFDLYVLVRWQVPLWRV--FVIHHIVAAVPYLIYNFHAGCGMDFYLLSLFLLVELAVIPLNITTFLEQLGYGKTPVHQLFFFSTYVFWFGARVVLPLYNVYVLWERIIP----ESSDAPF--CVIPAAVCGHLIAAFCVGVFV 233
BLAST of jgi.p|Trimin1|164331 vs. uniprot
Match: A0A1V9Z8J1_9STRA (TLC domain-containing protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Z8J1_9STRA) HSP 1 Score: 160 bits (404), Expect = 6.190e-43 Identity = 87/239 (36.40%), Postives = 137/239 (57.32%), Query Frame = 1 Query: 28 IAAAAFVAFWLLFIGTWWLSTRYGQYGFEQYTAKEKAEWCARISSTVHASIVVPGVIACLIENKWSSDSIAFTSPAGCRAIFSVSIGYFLQDLGALIWWRLQHWQATAFVAHHLVALTPYCINNFVSGCHCGNYVLALFLLVEIPTLPLNCVGTLDQLGLRQSHARYLCFLVMYSSWFLARVLLPVYLLIVLYEIIIPSWYSDRGGAQFAVCVVPSAVCANVIAFACFYIFLAQLSLDL 744 + A VAF +F G+++LS +Y F + E+ EWC+RI+ST+H++++ G++ + +W ++ + S +FS SI YFL DL +I W++ HW+ FVAHH++A PY + NF GC Y+L+L+LLVEI P+N LD +G + + A F V Y +WF ARV LP+Y + V++ IP ++D VC VP VC +VI+ C F+ ++ D+ Sbjct: 29 VLAGCVVAFAAIFYGSYFLSDKYIA-TFRAFPEVERGEWCSRINSTIHSTVICTGLLYSFTQQEWDANMMPIHSLDLATGLFSFSIAYFLFDLYVVIAWKIDHWKV--FVAHHIIAAIPYLLFNFYGGCTMNAYLLSLYLLVEICIPPMNLATILDLVGYKDTVAYVGLFYVAYVAWFFARVCLPLYTVYVMWVDFIP--HADLTSFHVLVCTVPPIVCGHVISLFCIGCFVFMITPDV 262
BLAST of jgi.p|Trimin1|164331 vs. uniprot
Match: A0A067BSF7_SAPPC (TLC domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067BSF7_SAPPC) HSP 1 Score: 157 bits (398), Expect = 4.730e-42 Identity = 94/249 (37.75%), Postives = 135/249 (54.22%), Query Frame = 1 Query: 7 DQIDDALIAAAAFVAFWLLFIGTWWLSTRYGQYGFEQYTAKEKAEWCARISSTVHASIVVPGVIACLIENKWSSDSIAFTSPAGCRAIFSVSIGYFLQDLGALIWWRL-QHWQATAFVAHHLVALTPYCINNFVSGCHCGNYVLALFLLVEIPTLPLNCVGTLDQLGLRQSHARYLCFLVMYSSWFLARVLLPVYLLIVLYEIIIPSWYSDRGGAQFAVCVVPSAVCANVIAFACFYIFLAQLSLDLFH 750 D +A IAA FV F +F +W ++ F ++ EKA+WC+RI+ST+HA ++V GV+ + W D + +S +FS++IGYFL DL +I W + W FV HH+VA+ PY INNFVS C + L LFLLVEI TLPLN G ++ +G S + Y +W + R LLPVYLL V + P+ D VC P+ +CA++IA C +F + ++ H Sbjct: 13 DAATNAAIAAGFFVFFAGMFRFSWKYCLQHNP-KFPDFSPAEKADWCSRINSTIHAIVIVAGVVYAICVIDWDKDYLPMSSIQPACTVFSIAIGYFLFDLIVVIAWPVPMQW---VFVIHHIVAVVPYIINNFVSACTGCQFGLLLFLLVEIATLPLNARGFMESMGRHDSLSHTRSIYATYVTWAVTRTLLPVYLLYVFWSFSYPADKDDN------VCFYPNLICAHIIAAFCVGVFCFVHTPEIMH 251
BLAST of jgi.p|Trimin1|164331 vs. uniprot
Match: A0A1V9ZP92_9STRA (TLC domain-containing protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZP92_9STRA) HSP 1 Score: 157 bits (397), Expect = 7.360e-42 Identity = 94/243 (38.68%), Postives = 139/243 (57.20%), Query Frame = 1 Query: 4 SDQIDDALIAAAAFVAFWLLFIGTWWLSTRYGQYG---FEQYTAKEKAEWCARISSTVHASIVVPGVIACLIENKWSSDSIAFTSPAGCRAIFSVSIGYFLQDLGALIWWRLQ-HWQATAFVAHHLVALTPYCINNFVSGCHCGNYVLALFLLVEIPTLPLNCVGTLDQLGLRQSHARYLCFLVMYSSWFLARVLLPVYLLIVLYEIIIPSWYSDRGGAQFAVCVVPSAVCANVIAFACFYIF 720 + +I+ ++ AA A F++ F G + S +Y Q F +T EKA+WC+RI+ST+HA I+V GV+ + W D + +S +FS++IGYFL DL ++ W +Q W F+ HH+VA+ PY INNFVS C + L LFLLVEI TLPLN G ++ +G++ S + Y +W ++R LLPVYLL V + P+ D VC P+ +CA++IA C +F Sbjct: 7 ASEINTSVNAAIA-GGFFVFFSGLFRFSWKYCQQHNPKFASFTPAEKADWCSRINSTIHALIIVIGVVYAICVIHWDDDYLPKSSIQPACTVFSIAIGYFLSDLIVVMAWPVQLQW---VFIIHHIVAVVPYIINNFVSACTGCQFGLLLFLLVEIATLPLNARGFMESMGIQDSLSHTRAIYATYVTWAVSRTLLPVYLLYVFWSFSYPADKDDD------VCFYPNLICAHIIAAFCVGVF 239
BLAST of jgi.p|Trimin1|164331 vs. uniprot
Match: A0A1V9ZF67_9STRA (TLC domain-containing protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZF67_9STRA) HSP 1 Score: 155 bits (391), Expect = 4.940e-41 Identity = 94/234 (40.17%), Postives = 130/234 (55.56%), Query Frame = 1 Query: 19 DALIAAAAFVAFWLLFIGTWWLSTRYGQYGFEQYTAKEKAEWCARISSTVHASIVVPGVIACLIENKWSSDSIAFTSPAGCRAIFSVSIGYFLQDLGALIWWRLQHWQATAFVAHHLVALTPYCINNFVSGCHCGNYVLALFLLVEIPTLPLNCVGTLDQLGLRQSHARYLCFLVMYSSWFLARVLLPVYLLIVLYEIIIPSWYSDRGGAQFAVCVVPSAVCANVIAFACFYIF 720 +A IAA FV F +F +W S + F ++A EKA+WC+RI+ST+HA ++V GV+ +I W D + +S FS++IGYFL DL ++ W +Q FV HH+VA+ PY INNFVS C + L LFLLVEI TLPLN G ++ +G S Y +W + R LLPVYLL V + P+ D VC P+ +CA++IA C +F Sbjct: 16 NAAIAAGFFVFFAGVFRFSWTYSMLHNP-KFASFSAAEKADWCSRINSTIHAVVIVIGVLYAIIVIDWDKDYLPTSSIQPACTAFSIAIGYFLCDLIVVLAWPVQ--MQYVFVIHHIVAVIPYIINNFVSACTGCQFGLLLFLLVEIATLPLNARGFMESMGRANSPQHTRSIYATYVTWAVTRTLLPVYLLYVFWSFSYPADKDDD------VCFYPNLICAHIIAAFCVGVF 240
BLAST of jgi.p|Trimin1|164331 vs. uniprot
Match: W4GET3_9STRA (TLC domain-containing protein n=4 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GET3_9STRA) HSP 1 Score: 154 bits (390), Expect = 8.920e-41 Identity = 83/221 (37.56%), Postives = 129/221 (58.37%), Query Frame = 1 Query: 58 LLFIGTWW----LSTRYGQYGFEQYTAKEKAEWCARISSTVHASIVVPGVIACLIENKWSSDSIAFTSPAGCRAIFSVSIGYFLQDLGALIWWRLQHWQATAFVAHHLVALTPYCINNFVSGCHCGNYVLALFLLVEIPTLPLNCVGTLDQLGLRQSHARYLCFLVMYSSWFLARVLLPVYLLIVLYEIIIPSWYSDRGGAQFAVCVVPSAVCANVIAFAC 708 ++F+G +W +S RY ++ YT E+A WC+R+ ST+HA+++ G++ L + W S S RA FS SI YFL DL + +W++ W+ F AHHLVA+ P+ I NF C ++L+++LLVEI +P+N L+ LG S + V + SW LAR +LP+Y L +L+ +++PS + A + VC VP+ VC +VI+F C Sbjct: 26 VVFVGVFWTTHVVSLRYAAI-YKAYTTTERANWCSRVGSTLHATVICIGMLYSLTQQTWDSSLRPLHSVDLARAFFSWSIAYFLYDLVVVAYWQVPQWKV--FTAHHLVAMVPFAIFNFYGSCLADTFLLSIYLLVEICVVPMNVATFLEDLGYAHSRVHVIVSYVSFGSWVLARGVLPLYALFILWTVMVPS-LTVHSTADW-VCAVPAIVCGHVISFFC 241
BLAST of jgi.p|Trimin1|164331 vs. uniprot
Match: K3WHE8_GLOUD (TLC domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WHE8_GLOUD) HSP 1 Score: 153 bits (387), Expect = 4.300e-40 Identity = 92/236 (38.98%), Postives = 132/236 (55.93%), Query Frame = 1 Query: 16 DDALIAAAAFVAFWLLFIGTWWLSTRYGQYGFEQYTAKEKAEWCARISSTVHASIVVPGVIACLIENKWSSDSIAFTSPAGCRAIFSVSIGYFLQDLGALIWWRLQHWQATAFVAHHLVALTPYCINNFVSGCHCGNYVLALFLLVEIPTLPLNCVGTLDQLGLRQSHARYLCFLVMYSSWFLARVLLPVYLLIVLYEIIIPSWYSDRGGAQFAVCVVPSAVCANVIAFACFYIFL 723 ++AL+A+ FV FW F W +S +Y + F + A +KA+WC+R++ST+HA VV GV L W S+ +S IFSV+IGYF+ DL +I W + F+ HH+VA+ PY INNF+S C Y L L+LLVE+ TLPLN G ++ +G + V Y W + R LP+YLL V+++ PS DR VC+ + V A+VI+ C +FL Sbjct: 24 ENALVASLTFVFFWATFGLAWVVSKKYVK-EFAAFPAPQKADWCSRVNSTIHAVAVVIGVAVALSSITWDSEFAPTSSIRSASFIFSVAIGYFMCDLMIIIIWPVP--MQYVFITHHIVAVVPYFINNFISCCAASQYGLLLYLLVELATLPLNARGFMESVGREDTKNHTRSIYVTYWVWAVTRTALPIYLLYVVWKYAYPS---DRN---HDVCLYTNIVGAHVISLFCVGVFL 250
BLAST of jgi.p|Trimin1|164331 vs. uniprot
Match: T0S4A6_SAPDV (TLC domain-containing protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0S4A6_SAPDV) HSP 1 Score: 151 bits (382), Expect = 6.530e-40 Identity = 80/233 (34.33%), Postives = 134/233 (57.51%), Query Frame = 1 Query: 46 VAFWLLFIGTWWLSTRYGQYGFEQYTAKEKAEWCARISSTVHASIVVPGVIACLIENKWSSDSIAFTSPAGCRAIFSVSIGYFLQDLGALIWWRLQHWQATAFVAHHLVALTPYCINNFVSGCHCGNYVLALFLLVEIPTLPLNCVGTLDQLGLRQSHARYLCFLVMYSSWFLARVLLPVYLLIVLYEIIIPSWYSDRGGAQFAVCVVPSAVCANVIAFACFYIFLAQLSLDL 744 V F +F G+++LS +Y F ++ +K EWC+RI+ST+H++++ G++ + +W + + S +FS SI YFL DL + W+++H++ FVAHH++A+ PY + NF GC Y+L+++LLVEI P+N LD LG +++ F V Y +WF ARV LP+Y L V++ IP +D + +C P +C +VI+ C F+ ++ D+ Sbjct: 17 VGFVAVFYGSYYLSNKYLAV-FRAFSEVQKGEWCSRINSTIHSTVICAGLLYSFSQQEWDAHLMPIHSLDLAIGLFSFSIAYFLFDLYVVYAWKIEHYKV--FVAHHIIAMIPYVLYNFYGGCTMNTYLLSMYLLVEICIPPMNLATILDLLGYKETAVYIGLFYVAYIAWFFARVCLPLYTLYVMWADFIPG--TDWSSFRVFLCTAPPLLCGHVISVFCIGCFVTMITPDV 244 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|164331 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_5411 ID=mRNA_5411|Name=jgi.p|Trimin1|164331|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1077bp|location=Sequence derived from alignment at Contig_30:775745..777274- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGTCAGATCAGATCGATGATGCACTCATCGCTGCAGCAGCCTTTGTGGCback to top protein sequence of jgi.p|Trimin1|164331 >Trimin1|164331|e_gw1.30.58.1 ID=Trimin1|164331|e_gw1.30.58.1|Name=jgi.p|Trimin1|164331|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=359bp MSDQIDDALIAAAAFVAFWLLFIGTWWLSTRYGQYGFEQYTAKEKAEWCAback to top mRNA from alignment at Contig_30:775745..777274- Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_5411 ID=mRNA_5411|Name=jgi.p|Trimin1|164331|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1530bp|location=Sequence derived from alignment at Contig_30:775745..777274- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_30:775745..777274- >mRNA_5411 ID=mRNA_5411|Name=jgi.p|Trimin1|164331|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1077bp|location=Sequence derived from alignment at Contig_30:775745..777274- (Tribonema minus UTEX_B_3156 )back to top |