mRNA_5411 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|164331
Unique NamemRNA_5411
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|164331 vs. uniprot
Match: A0A836CDT2_9STRA (TLC domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDT2_9STRA)

HSP 1 Score: 697 bits (1800), Expect = 1.840e-253
Identity = 358/358 (100.00%), Postives = 358/358 (100.00%), Query Frame = 1
Query:    1 MSDQIDDALIAAAAFVAFWLLFIGTWWLSTRYGQYGFEQYTAKEKAEWCARISSTVHASIVVPGVIACLIENKWSSDSIAFTSPAGCRAIFSVSIGYFLQDLGALIWWRLQHWQATAFVAHHLVALTPYCINNFVSGCHCGNYVLALFLLVEIPTLPLNCVGTLDQLGLRQSHARYLCFLVMYSSWFLARVLLPVYLLIVLYEIIIPSWYSDRGGAQFAVCVVPSAVCANVIAFACFYIFLAQLSLDLFHECIGDRPNLKTLQDDSSRSPVTGRFGGLEPALRALEGGGGSAANAERLPLLGHRALAAQGXXXXXXXXXXXXXEFYGESLACAADCAWSSKSCAVRGVRDGAQCHVVC 1074
            MSDQIDDALIAAAAFVAFWLLFIGTWWLSTRYGQYGFEQYTAKEKAEWCARISSTVHASIVVPGVIACLIENKWSSDSIAFTSPAGCRAIFSVSIGYFLQDLGALIWWRLQHWQATAFVAHHLVALTPYCINNFVSGCHCGNYVLALFLLVEIPTLPLNCVGTLDQLGLRQSHARYLCFLVMYSSWFLARVLLPVYLLIVLYEIIIPSWYSDRGGAQFAVCVVPSAVCANVIAFACFYIFLAQLSLDLFHECIGDRPNLKTLQDDSSRSPVTGRFGGLEPALRALEGGGGSAANAERLPLLGHRALAAQGXXXXXXXXXXXXXEFYGESLACAADCAWSSKSCAVRGVRDGAQCHVVC
Sbjct:    1 MSDQIDDALIAAAAFVAFWLLFIGTWWLSTRYGQYGFEQYTAKEKAEWCARISSTVHASIVVPGVIACLIENKWSSDSIAFTSPAGCRAIFSVSIGYFLQDLGALIWWRLQHWQATAFVAHHLVALTPYCINNFVSGCHCGNYVLALFLLVEIPTLPLNCVGTLDQLGLRQSHARYLCFLVMYSSWFLARVLLPVYLLIVLYEIIIPSWYSDRGGAQFAVCVVPSAVCANVIAFACFYIFLAQLSLDLFHECIGDRPNLKTLQDDSSRSPVTGRFGGLEPALRALEGGGGSAANAERLPLLGHRALAAQGXXXXXXXXXXXXXEFYGESLACAADCAWSSKSCAVRGVRDGAQCHVVC 358          
BLAST of jgi.p|Trimin1|164331 vs. uniprot
Match: D8LDE1_ECTSI (TLC domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LDE1_ECTSI)

HSP 1 Score: 166 bits (421), Expect = 2.440e-45
Identity = 110/287 (38.33%), Postives = 153/287 (53.31%), Query Frame = 1
Query:   31 AAAAFVAFWLLFIGTWWLSTRYGQYGFEQYTAKEKAEWCARISSTVHASIVVPGVIACLIENKWSSDSIAFTSPAGCRAI----FSVSIGYFLQDLGALIWWRLQHWQATAFVAHHLVALTPYCINNFVSGCHCGNYVLALFLLVEIPTLPLNCVGTLDQLGLRQSHARYLCFLVMYSSWFLARVLLPVYLLIVLYEIIIPSWYSDRGGAQFAVCVVPSAVCANVIAFACFYIFLAQLSLDLFHEC-IGDR--PNLKTLQDDSSRSPVTGRFGGLEPALRALEGGGG 870
            A   FV   L+F   W LS     + F  +    KA+W ARI+ST+HA +V   V  CL+   +   ++    P G   +    FS+SIGYFL DL  ++WW L  W  T FVAHH+VALTPY I  F   CH G YVL LFLLVE  T+PLN +  L+ LG R++    +    MYS WF+ R+LLP+YLL++++  I  +  ++        C+VPS VCA++IA  C  +F   L+ +++     GD+  PN+ T              G    A  A+E GGG
Sbjct:   17 AVVTFVCAGLIFRLGWKLSEA-RVWRFNSFADVNKADWSARINSTIHAGLVCTLVTICLLTMSFDPVTLV---PLGSTVLLEITFSISIGYFLFDLSVILWWMLPMW--TVFVAHHVVALTPYVITQFFYTCHQGQYVLLLFLLVEASTMPLNAMAFLEDLGRRRTPEHRIAHGAMYSLWFVFRILLPLYLLLLIWTKIAQNISTEEA------CLVPSMVCAHIIAVFCIGVFFFLLTPEVYCRIKYGDKDDPNVDTTS-----------VGAASSAPGAMELGGG 280          
BLAST of jgi.p|Trimin1|164331 vs. uniprot
Match: K3W7E3_GLOUD (TLC domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3W7E3_GLOUD)

HSP 1 Score: 161 bits (407), Expect = 1.910e-43
Identity = 92/227 (40.53%), Postives = 135/227 (59.47%), Query Frame = 1
Query:   46 VAFWL-LFIGTWWLSTRYGQYGFEQYTAKEKAEWCARISSTVHASIVVPGVIACLIENKWSSDSIAFTSPAGCRAIFSVSIGYFLQDLGALIWWRLQHWQATAFVAHHLVALTPYCINNFVSGCHCGNYVLALFLLVEIPTLPLNCVGTLDQLGLRQSHARYLCFLVMYSSWFLARVLLPVYLLIVLYEIIIPSWYSDRGGAQFAVCVVPSAVCANVIAFACFYIFL 723
            +A W  LF+    LS RY    +  ++  E+ +WC+R++ST+HA I+V G++  ++  +W  D +   S     A+FS S GYFL DL  L+ W++  W+   FV HH+VA  PY I NF +GC    Y+L+LFLLVE+  +PLN    L+QLG  ++    L F   Y  WF ARV+LP+Y + VL+E IIP    +   A F  CV+P+AVC ++IA  C  +F+
Sbjct:   16 MALWTALFVAGSRLSARYVPV-YRDFSKAEQGDWCSRVNSTIHAVIIVVGMLTTVLRQQWDEDLMPLRSTTAATALFSFSCGYFLFDLYVLVRWQVPLWRV--FVIHHIVAAVPYLIYNFHAGCGMDFYLLSLFLLVELAVIPLNITTFLEQLGYGKTPVHQLFFFSTYVFWFGARVVLPLYNVYVLWERIIP----ESSDAPF--CVIPAAVCGHLIAAFCVGVFV 233          
BLAST of jgi.p|Trimin1|164331 vs. uniprot
Match: A0A1V9Z8J1_9STRA (TLC domain-containing protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Z8J1_9STRA)

HSP 1 Score: 160 bits (404), Expect = 6.190e-43
Identity = 87/239 (36.40%), Postives = 137/239 (57.32%), Query Frame = 1
Query:   28 IAAAAFVAFWLLFIGTWWLSTRYGQYGFEQYTAKEKAEWCARISSTVHASIVVPGVIACLIENKWSSDSIAFTSPAGCRAIFSVSIGYFLQDLGALIWWRLQHWQATAFVAHHLVALTPYCINNFVSGCHCGNYVLALFLLVEIPTLPLNCVGTLDQLGLRQSHARYLCFLVMYSSWFLARVLLPVYLLIVLYEIIIPSWYSDRGGAQFAVCVVPSAVCANVIAFACFYIFLAQLSLDL 744
            + A   VAF  +F G+++LS +Y    F  +   E+ EWC+RI+ST+H++++  G++    + +W ++ +   S      +FS SI YFL DL  +I W++ HW+   FVAHH++A  PY + NF  GC    Y+L+L+LLVEI   P+N    LD +G + + A    F V Y +WF ARV LP+Y + V++   IP  ++D       VC VP  VC +VI+  C   F+  ++ D+
Sbjct:   29 VLAGCVVAFAAIFYGSYFLSDKYIA-TFRAFPEVERGEWCSRINSTIHSTVICTGLLYSFTQQEWDANMMPIHSLDLATGLFSFSIAYFLFDLYVVIAWKIDHWKV--FVAHHIIAAIPYLLFNFYGGCTMNAYLLSLYLLVEICIPPMNLATILDLVGYKDTVAYVGLFYVAYVAWFFARVCLPLYTVYVMWVDFIP--HADLTSFHVLVCTVPPIVCGHVISLFCIGCFVFMITPDV 262          
BLAST of jgi.p|Trimin1|164331 vs. uniprot
Match: A0A067BSF7_SAPPC (TLC domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067BSF7_SAPPC)

HSP 1 Score: 157 bits (398), Expect = 4.730e-42
Identity = 94/249 (37.75%), Postives = 135/249 (54.22%), Query Frame = 1
Query:    7 DQIDDALIAAAAFVAFWLLFIGTWWLSTRYGQYGFEQYTAKEKAEWCARISSTVHASIVVPGVIACLIENKWSSDSIAFTSPAGCRAIFSVSIGYFLQDLGALIWWRL-QHWQATAFVAHHLVALTPYCINNFVSGCHCGNYVLALFLLVEIPTLPLNCVGTLDQLGLRQSHARYLCFLVMYSSWFLARVLLPVYLLIVLYEIIIPSWYSDRGGAQFAVCVVPSAVCANVIAFACFYIFLAQLSLDLFH 750
            D   +A IAA  FV F  +F  +W    ++    F  ++  EKA+WC+RI+ST+HA ++V GV+  +    W  D +  +S      +FS++IGYFL DL  +I W +   W    FV HH+VA+ PY INNFVS C    + L LFLLVEI TLPLN  G ++ +G   S +        Y +W + R LLPVYLL V +    P+   D       VC  P+ +CA++IA  C  +F    + ++ H
Sbjct:   13 DAATNAAIAAGFFVFFAGMFRFSWKYCLQHNP-KFPDFSPAEKADWCSRINSTIHAIVIVAGVVYAICVIDWDKDYLPMSSIQPACTVFSIAIGYFLFDLIVVIAWPVPMQW---VFVIHHIVAVVPYIINNFVSACTGCQFGLLLFLLVEIATLPLNARGFMESMGRHDSLSHTRSIYATYVTWAVTRTLLPVYLLYVFWSFSYPADKDDN------VCFYPNLICAHIIAAFCVGVFCFVHTPEIMH 251          
BLAST of jgi.p|Trimin1|164331 vs. uniprot
Match: A0A1V9ZP92_9STRA (TLC domain-containing protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZP92_9STRA)

HSP 1 Score: 157 bits (397), Expect = 7.360e-42
Identity = 94/243 (38.68%), Postives = 139/243 (57.20%), Query Frame = 1
Query:    4 SDQIDDALIAAAAFVAFWLLFIGTWWLSTRYGQYG---FEQYTAKEKAEWCARISSTVHASIVVPGVIACLIENKWSSDSIAFTSPAGCRAIFSVSIGYFLQDLGALIWWRLQ-HWQATAFVAHHLVALTPYCINNFVSGCHCGNYVLALFLLVEIPTLPLNCVGTLDQLGLRQSHARYLCFLVMYSSWFLARVLLPVYLLIVLYEIIIPSWYSDRGGAQFAVCVVPSAVCANVIAFACFYIF 720
            + +I+ ++ AA A   F++ F G +  S +Y Q     F  +T  EKA+WC+RI+ST+HA I+V GV+  +    W  D +  +S      +FS++IGYFL DL  ++ W +Q  W    F+ HH+VA+ PY INNFVS C    + L LFLLVEI TLPLN  G ++ +G++ S +        Y +W ++R LLPVYLL V +    P+   D       VC  P+ +CA++IA  C  +F
Sbjct:    7 ASEINTSVNAAIA-GGFFVFFSGLFRFSWKYCQQHNPKFASFTPAEKADWCSRINSTIHALIIVIGVVYAICVIHWDDDYLPKSSIQPACTVFSIAIGYFLSDLIVVMAWPVQLQW---VFIIHHIVAVVPYIINNFVSACTGCQFGLLLFLLVEIATLPLNARGFMESMGIQDSLSHTRAIYATYVTWAVSRTLLPVYLLYVFWSFSYPADKDDD------VCFYPNLICAHIIAAFCVGVF 239          
BLAST of jgi.p|Trimin1|164331 vs. uniprot
Match: A0A1V9ZF67_9STRA (TLC domain-containing protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZF67_9STRA)

HSP 1 Score: 155 bits (391), Expect = 4.940e-41
Identity = 94/234 (40.17%), Postives = 130/234 (55.56%), Query Frame = 1
Query:   19 DALIAAAAFVAFWLLFIGTWWLSTRYGQYGFEQYTAKEKAEWCARISSTVHASIVVPGVIACLIENKWSSDSIAFTSPAGCRAIFSVSIGYFLQDLGALIWWRLQHWQATAFVAHHLVALTPYCINNFVSGCHCGNYVLALFLLVEIPTLPLNCVGTLDQLGLRQSHARYLCFLVMYSSWFLARVLLPVYLLIVLYEIIIPSWYSDRGGAQFAVCVVPSAVCANVIAFACFYIF 720
            +A IAA  FV F  +F  +W  S  +    F  ++A EKA+WC+RI+ST+HA ++V GV+  +I   W  D +  +S       FS++IGYFL DL  ++ W +Q      FV HH+VA+ PY INNFVS C    + L LFLLVEI TLPLN  G ++ +G   S          Y +W + R LLPVYLL V +    P+   D       VC  P+ +CA++IA  C  +F
Sbjct:   16 NAAIAAGFFVFFAGVFRFSWTYSMLHNP-KFASFSAAEKADWCSRINSTIHAVVIVIGVLYAIIVIDWDKDYLPTSSIQPACTAFSIAIGYFLCDLIVVLAWPVQ--MQYVFVIHHIVAVIPYIINNFVSACTGCQFGLLLFLLVEIATLPLNARGFMESMGRANSPQHTRSIYATYVTWAVTRTLLPVYLLYVFWSFSYPADKDDD------VCFYPNLICAHIIAAFCVGVF 240          
BLAST of jgi.p|Trimin1|164331 vs. uniprot
Match: W4GET3_9STRA (TLC domain-containing protein n=4 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GET3_9STRA)

HSP 1 Score: 154 bits (390), Expect = 8.920e-41
Identity = 83/221 (37.56%), Postives = 129/221 (58.37%), Query Frame = 1
Query:   58 LLFIGTWW----LSTRYGQYGFEQYTAKEKAEWCARISSTVHASIVVPGVIACLIENKWSSDSIAFTSPAGCRAIFSVSIGYFLQDLGALIWWRLQHWQATAFVAHHLVALTPYCINNFVSGCHCGNYVLALFLLVEIPTLPLNCVGTLDQLGLRQSHARYLCFLVMYSSWFLARVLLPVYLLIVLYEIIIPSWYSDRGGAQFAVCVVPSAVCANVIAFAC 708
            ++F+G +W    +S RY    ++ YT  E+A WC+R+ ST+HA+++  G++  L +  W S      S    RA FS SI YFL DL  + +W++  W+   F AHHLVA+ P+ I NF   C    ++L+++LLVEI  +P+N    L+ LG   S    +   V + SW LAR +LP+Y L +L+ +++PS  +    A + VC VP+ VC +VI+F C
Sbjct:   26 VVFVGVFWTTHVVSLRYAAI-YKAYTTTERANWCSRVGSTLHATVICIGMLYSLTQQTWDSSLRPLHSVDLARAFFSWSIAYFLYDLVVVAYWQVPQWKV--FTAHHLVAMVPFAIFNFYGSCLADTFLLSIYLLVEICVVPMNVATFLEDLGYAHSRVHVIVSYVSFGSWVLARGVLPLYALFILWTVMVPS-LTVHSTADW-VCAVPAIVCGHVISFFC 241          
BLAST of jgi.p|Trimin1|164331 vs. uniprot
Match: K3WHE8_GLOUD (TLC domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WHE8_GLOUD)

HSP 1 Score: 153 bits (387), Expect = 4.300e-40
Identity = 92/236 (38.98%), Postives = 132/236 (55.93%), Query Frame = 1
Query:   16 DDALIAAAAFVAFWLLFIGTWWLSTRYGQYGFEQYTAKEKAEWCARISSTVHASIVVPGVIACLIENKWSSDSIAFTSPAGCRAIFSVSIGYFLQDLGALIWWRLQHWQATAFVAHHLVALTPYCINNFVSGCHCGNYVLALFLLVEIPTLPLNCVGTLDQLGLRQSHARYLCFLVMYSSWFLARVLLPVYLLIVLYEIIIPSWYSDRGGAQFAVCVVPSAVCANVIAFACFYIFL 723
            ++AL+A+  FV FW  F   W +S +Y +  F  + A +KA+WC+R++ST+HA  VV GV   L    W S+    +S      IFSV+IGYF+ DL  +I W +       F+ HH+VA+ PY INNF+S C    Y L L+LLVE+ TLPLN  G ++ +G   +        V Y  W + R  LP+YLL V+++   PS   DR      VC+  + V A+VI+  C  +FL
Sbjct:   24 ENALVASLTFVFFWATFGLAWVVSKKYVK-EFAAFPAPQKADWCSRVNSTIHAVAVVIGVAVALSSITWDSEFAPTSSIRSASFIFSVAIGYFMCDLMIIIIWPVP--MQYVFITHHIVAVVPYFINNFISCCAASQYGLLLYLLVELATLPLNARGFMESVGREDTKNHTRSIYVTYWVWAVTRTALPIYLLYVVWKYAYPS---DRN---HDVCLYTNIVGAHVISLFCVGVFL 250          
BLAST of jgi.p|Trimin1|164331 vs. uniprot
Match: T0S4A6_SAPDV (TLC domain-containing protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0S4A6_SAPDV)

HSP 1 Score: 151 bits (382), Expect = 6.530e-40
Identity = 80/233 (34.33%), Postives = 134/233 (57.51%), Query Frame = 1
Query:   46 VAFWLLFIGTWWLSTRYGQYGFEQYTAKEKAEWCARISSTVHASIVVPGVIACLIENKWSSDSIAFTSPAGCRAIFSVSIGYFLQDLGALIWWRLQHWQATAFVAHHLVALTPYCINNFVSGCHCGNYVLALFLLVEIPTLPLNCVGTLDQLGLRQSHARYLCFLVMYSSWFLARVLLPVYLLIVLYEIIIPSWYSDRGGAQFAVCVVPSAVCANVIAFACFYIFLAQLSLDL 744
            V F  +F G+++LS +Y    F  ++  +K EWC+RI+ST+H++++  G++    + +W +  +   S      +FS SI YFL DL  +  W+++H++   FVAHH++A+ PY + NF  GC    Y+L+++LLVEI   P+N    LD LG +++      F V Y +WF ARV LP+Y L V++   IP   +D    +  +C  P  +C +VI+  C   F+  ++ D+
Sbjct:   17 VGFVAVFYGSYYLSNKYLAV-FRAFSEVQKGEWCSRINSTIHSTVICAGLLYSFSQQEWDAHLMPIHSLDLAIGLFSFSIAYFLFDLYVVYAWKIEHYKV--FVAHHIIAMIPYVLYNFYGGCTMNTYLLSMYLLVEICIPPMNLATILDLLGYKETAVYIGLFYVAYIAWFFARVCLPLYTLYVMWADFIPG--TDWSSFRVFLCTAPPLLCGHVISVFCIGCFVTMITPDV 244          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|164331 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CDT2_9STRA1.840e-253100.00TLC domain-containing protein n=1 Tax=Tribonema mi... [more]
D8LDE1_ECTSI2.440e-4538.33TLC domain-containing protein n=2 Tax=Ectocarpus T... [more]
K3W7E3_GLOUD1.910e-4340.53TLC domain-containing protein n=1 Tax=Globisporang... [more]
A0A1V9Z8J1_9STRA6.190e-4336.40TLC domain-containing protein n=1 Tax=Achlya hypog... [more]
A0A067BSF7_SAPPC4.730e-4237.75TLC domain-containing protein n=2 Tax=Saprolegnia ... [more]
A0A1V9ZP92_9STRA7.360e-4238.68TLC domain-containing protein n=1 Tax=Thraustothec... [more]
A0A1V9ZF67_9STRA4.940e-4140.17TLC domain-containing protein n=1 Tax=Achlya hypog... [more]
W4GET3_9STRA8.920e-4137.56TLC domain-containing protein n=4 Tax=Aphanomyces ... [more]
K3WHE8_GLOUD4.300e-4038.98TLC domain-containing protein n=1 Tax=Globisporang... [more]
T0S4A6_SAPDV6.530e-4034.33TLC domain-containing protein n=1 Tax=Saprolegnia ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_30contigContig_30:775745..777274 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|164331|e_gw1.30.58.1
Descriptionglutamate reuptake
COG categoryM
Max annot lvl2759|Eukaryota
EggNOG OGsKOG4561@1|root,KOG4561@2759|Eukaryota
Evalue3.99e-46
Seed ortholog2880.D8LDE1
Hectar predicted targeting categorysignal anchor
Ec32 ortholog descriptionTRAM/LAG1/CLN8 homology domain
Ec32 orthologEc-25_001610.1
TranscriptId164653
TrackFilteredModels1
ProteinId164331
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|164331gene_5411Tribonema minus UTEX_B_3156 geneContig_30 775745..777274 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|164331Trimin1|164331|e_gw1.30.58.1Tribonema minus UTEX_B_3156 polypeptideContig_30 775745..777274 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_5411_3exon_5411_3Tribonema minus UTEX_B_3156 exonContig_30 775745..776473 -
exon_5411_2exon_5411_2Tribonema minus UTEX_B_3156 exonContig_30 776904..776905 -
exon_5411_1exon_5411_1Tribonema minus UTEX_B_3156 exonContig_30 776929..777274 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_5411CDS_5411Tribonema minus UTEX_B_3156 CDSContig_30 776929..777274 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_5411 ID=mRNA_5411|Name=jgi.p|Trimin1|164331|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1077bp|location=Sequence derived from alignment at Contig_30:775745..777274- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGTCAGATCAGATCGATGATGCACTCATCGCTGCAGCAGCCTTTGTGGC
CTTCTGGCTCTTGTTCATAGGCACCTGGTGGCTCTCGACAAGATATGGGC
AATACGGCTTTGAGCAGTACACAGCCAAGGAGAAGGCGGAATGGTGCGCA
CGGATCAGCAGCACCGTGCACGCGTCAATAGTGGTGCCTGGGGTTATTGC
CTGCCTGATTGAGAACAAGTGGAGCAGCGACAGCATAGCCTTCACCAGCC
CAGCAGGGTGCAGAGCGATCTTCAGCGTAAGCATTGGCTATTTCCTGCAG
GACCTCGGCGCCCTCATATGGTGGCGGCTGCAGCACTGGCAGGCAACAGC
CTTTGTGGCACACCACCTGGTTGCCCTGACGCCCTACTGCATCAACAACT
TTGTATCGGGCTGCCACTGCGGCAACTACGTGCTGGCCCTCTTCCTGCTC
GTCGAGATACCTACCCTGCCCCTCAACTGCGTCGGCACCCTCGACCAGCT
GGGCCTGCGCCAGAGCCACGCGCGCTACCTGTGCTTCCTCGTCATGTACA
GCAGCTGGTTCCTGGCGCGTGTCCTGCTGCCCGTCTACCTCCTCATCGTC
CTCTACGAGATCATCATACCGAGCTGGTACAGCGACAGGGGCGGCGCGCA
GTTCGCCGTGTGCGTGGTGCCGTCGGCCGTGTGCGCCAACGTCATCGCCT
TCGCCTGCTTCTACATCTTCCTCGCGCAGCTCAGCCTTGACCTCTTCCAC
GAGTGCATCGGCGACCGCCCCAACCTCAAGACTCTTCAAGATGACTCATC
GCGGTCGCCCGTTACTGGACGCTTTGGGGGTCTGGAGCCGGCGCTGCGGG
CGTTGGAGGGTGGGGGAGGGAGCGCTGCGAATGCGGAGCGGCTGCCGCTG
CTGGGGCACAGGGCGCTGGCCGCGCAGGGGGGGGGCGCAGATGACGATGA
TGACTCATCTTCTGACGATGAGTTCTATGGTGAGTCACTCGCGTGCGCCG
CGGACTGCGCCTGGTCGAGTAAGTCATGCGCAGTGCGGGGTGTGCGTGAT
GGCGCACAATGTCATGTAGTCTGTTGA
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protein sequence of jgi.p|Trimin1|164331

>Trimin1|164331|e_gw1.30.58.1 ID=Trimin1|164331|e_gw1.30.58.1|Name=jgi.p|Trimin1|164331|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=359bp
MSDQIDDALIAAAAFVAFWLLFIGTWWLSTRYGQYGFEQYTAKEKAEWCA
RISSTVHASIVVPGVIACLIENKWSSDSIAFTSPAGCRAIFSVSIGYFLQ
DLGALIWWRLQHWQATAFVAHHLVALTPYCINNFVSGCHCGNYVLALFLL
VEIPTLPLNCVGTLDQLGLRQSHARYLCFLVMYSSWFLARVLLPVYLLIV
LYEIIIPSWYSDRGGAQFAVCVVPSAVCANVIAFACFYIFLAQLSLDLFH
ECIGDRPNLKTLQDDSSRSPVTGRFGGLEPALRALEGGGGSAANAERLPL
LGHRALAAQGGGADDDDDSSSDDEFYGESLACAADCAWSSKSCAVRGVRD
GAQCHVVC*
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mRNA from alignment at Contig_30:775745..777274-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5411 ID=mRNA_5411|Name=jgi.p|Trimin1|164331|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1530bp|location=Sequence derived from alignment at Contig_30:775745..777274- (Tribonema minus UTEX_B_3156 )
ATGTCAGATCAGATCGATGATGCACTCATCGCTGCAGCAGCCTTTGTGGC CTTCTGGCTCTTGTTCATAGGCACCTGGTGGCTCTCGACAAGATATGGGC AATACGGCTTTGAGCAGTACACAGCCAAGGAGAAGGCGGAATGGTGCGCA CGGATCAGCAGCACCGTGCACGCGTCAATAGTGGTGCCTGGGGTTATTGC CTGCCTGATTGAGAACAAGTGGAGCAGCGACAGCATAGCCTTCACCAGCC CAGCAGGGTGCAGAGCGATCTTCAGCGTAAGCATTGGCTATTTCCTGCAG GACCTCGGCGCCCTCATATGGTGGCGGCTGCAGCACTGGCAGGCAAGTGC AATCTCTACATGCAACAAGCAGTCGACAACGGTGTTGTCTTGTGTCGGTG TTTGTTTCTTGTATTTCGGAGTATATCAATCGTCAGATTGATAAGATTTG ATAGTGCAAGCTCACATGCATACACGTCTGGGCTGACCACAGGGCAGCTG AAGAGTTCGCAGAGCACACGCTACTGCTGACATGAGATCTGACAACTGGT AACATCGACGACGCACCGTGAAGTTTGCACATGGCCTCCTGTCAGTATGC AGTCAGCCATGCCACGGGTCGCCTGTGGACGGCATCGCCAAGCTCGCGCG GCGCCAACTTGCTTGTTCATGTGCTTCTTGAACCAGCATTGCCCAAAATC TGCTTGGCGCAAACTTTTGGGCATGTGCGCTAATACGTATTCGTTGTATT GTGTCAACCAATCTTGTGCCCTAATCGTACGACGTGTTTCTCCGTGCGCA GGCCTTTGTGGCACACCACCTGGTTGCCCTGACGCCCTACTGCATCAACA ACTTTGTATCGGGCTGCCACTGCGGCAACTACGTGCTGGCCCTCTTCCTG CTCGTCGAGATACCTACCCTGCCCCTCAACTGCGTCGGCACCCTCGACCA GCTGGGCCTGCGCCAGAGCCACGCGCGCTACCTGTGCTTCCTCGTCATGT ACAGCAGCTGGTTCCTGGCGCGTGTCCTGCTGCCCGTCTACCTCCTCATC GTCCTCTACGAGATCATCATACCGAGCTGGTACAGCGACAGGGGCGGCGC GCAGTTCGCCGTGTGCGTGGTGCCGTCGGCCGTGTGCGCCAACGTCATCG CCTTCGCCTGCTTCTACATCTTCCTCGCGCAGCTCAGCCTTGACCTCTTC CACGAGTGCATCGGCGACCGCCCCAACCTCAAGACTCTTCAAGATGACTC ATCGCGGTCGCCCGTTACTGGACGCTTTGGGGGTCTGGAGCCGGCGCTGC GGGCGTTGGAGGGTGGGGGAGGGAGCGCTGCGAATGCGGAGCGGCTGCCG CTGCTGGGGCACAGGGCGCTGGCCGCGCAGGGGGGGGGCGCAGATGACGA TGATGACTCATCTTCTGACGATGAGTTCTATGGTGAGTCACTCGCGTGCG CCGCGGACTGCGCCTGGTCGAGTAAGTCATGCGCAGTGCGGGGTGTGCGT GATGGCGCACAATGTCATGTAGTCTGTTGA
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Coding sequence (CDS) from alignment at Contig_30:775745..777274-

>mRNA_5411 ID=mRNA_5411|Name=jgi.p|Trimin1|164331|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1077bp|location=Sequence derived from alignment at Contig_30:775745..777274- (Tribonema minus UTEX_B_3156 )
ATGTCAGATCAGATCGATGATGCACTCATCGCTGCAGCAGCCTTTGTGGC
CTTCTGGCTCTTGTTCATAGGCACCTGGTGGCTCTCGACAAGATATGGGC
AATACGGCTTTGAGCAGTACACAGCCAAGGAGAAGGCGGAATGGTGCGCA
CGGATCAGCAGCACCGTGCACGCGTCAATAGTGGTGCCTGGGGTTATTGC
CTGCCTGATTGAGAACAAGTGGAGCAGCGACAGCATAGCCTTCACCAGCC
CAGCAGGGTGCAGAGCGATCTTCAGCGTAAGCATTGGCTATTTCCTGCAG
GACCTCGGCGCCCTCATATGGTGGCGGCTGCAGCACTGGCAGGCAACAGC
CTTTGTGGCACACCACCTGGTTGCCCTGACGCCCTACTGCATCAACAACT
TTGTATCGGGCTGCCACTGCGGCAACTACGTGCTGGCCCTCTTCCTGCTC
GTCGAGATACCTACCCTGCCCCTCAACTGCGTCGGCACCCTCGACCAGCT
GGGCCTGCGCCAGAGCCACGCGCGCTACCTGTGCTTCCTCGTCATGTACA
GCAGCTGGTTCCTGGCGCGTGTCCTGCTGCCCGTCTACCTCCTCATCGTC
CTCTACGAGATCATCATACCGAGCTGGTACAGCGACAGGGGCGGCGCGCA
GTTCGCCGTGTGCGTGGTGCCGTCGGCCGTGTGCGCCAACGTCATCGCCT
TCGCCTGCTTCTACATCTTCCTCGCGCAGCTCAGCCTTGACCTCTTCCAC
GAGTGCATCGGCGACCGCCCCAACCTCAAGACTCTTCAAGATGACTCATC
GCGGTCGCCCGTTACTGGACGCTTTGGGGGTCTGGAGCCGGCGCTGCGGG
CGTTGGAGGGTGGGGGAGGGAGCGCTGCGAATGCGGAGCGGCTGCCGCTG
CTGGGGCACAGGGCGCTGGCCGCGCAGGGGGGGGGCGCAGATGACGATGA
TGACTCATCTTCTGACGATGAGTTCTATGGTGAGTCACTCGCGTGCGCCG
CGGACTGCGCCTGGTCGAGTAAGTCATGCGCAGTGCGGGGTGTGCGTGAT
GGCGCACAATGTCATGTAGTCTGTTGA
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