mRNA_5410 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|164295 vs. uniprot
Match: A0A836CEK3_9STRA (P-loop containing nucleoside triphosphate hydrolase protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEK3_9STRA) HSP 1 Score: 644 bits (1660), Expect = 4.220e-233 Identity = 329/329 (100.00%), Postives = 329/329 (100.00%), Query Frame = 1 Query: 1 ANNEDHVEYDDLDDLTARHRRARKERVDSVSDTILEARRLHLRRIRDFEVDPETVEQLRKLGLGRRKQPLDNRAFTKKWLNNKQVATGMGAGGFAVHLGSASKDWPMFKHNLPEVALAGHTNCGKSTLVNALAGIHPRQGLAGVSERAGWTDFVSFYQIGKKPPVLTLVDLPGYGHAVANRSMQREWRRMTKDYLSGQRRQLCRCCVLVDATRGLAEEDRILLAHLERRGIEHQLVLTKGDLLLPEQLAQSMAAVTQDLMDIGAKLLAKPPILPVCGHTGAGVTALWENMRTRSLREPGSLVSSIEAARRVREAKLEKDRLKLQHTRTR 987 ANNEDHVEYDDLDDLTARHRRARKERVDSVSDTILEARRLHLRRIRDFEVDPETVEQLRKLGLGRRKQPLDNRAFTKKWLNNKQVATGMGAGGFAVHLGSASKDWPMFKHNLPEVALAGHTNCGKSTLVNALAGIHPRQGLAGVSERAGWTDFVSFYQIGKKPPVLTLVDLPGYGHAVANRSMQREWRRMTKDYLSGQRRQLCRCCVLVDATRGLAEEDRILLAHLERRGIEHQLVLTKGDLLLPEQLAQSMAAVTQDLMDIGAKLLAKPPILPVCGHTGAGVTALWENMRTRSLREPGSLVSSIEAARRVREAKLEKDRLKLQHTRTR Sbjct: 1 ANNEDHVEYDDLDDLTARHRRARKERVDSVSDTILEARRLHLRRIRDFEVDPETVEQLRKLGLGRRKQPLDNRAFTKKWLNNKQVATGMGAGGFAVHLGSASKDWPMFKHNLPEVALAGHTNCGKSTLVNALAGIHPRQGLAGVSERAGWTDFVSFYQIGKKPPVLTLVDLPGYGHAVANRSMQREWRRMTKDYLSGQRRQLCRCCVLVDATRGLAEEDRILLAHLERRGIEHQLVLTKGDLLLPEQLAQSMAAVTQDLMDIGAKLLAKPPILPVCGHTGAGVTALWENMRTRSLREPGSLVSSIEAARRVREAKLEKDRLKLQHTRTR 329
BLAST of jgi.p|Trimin1|164295 vs. uniprot
Match: D7FIT5_ECTSI (YihA3, YihA/EngB-like GTPase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIT5_ECTSI) HSP 1 Score: 295 bits (755), Expect = 2.920e-94 Identity = 162/298 (54.36%), Postives = 204/298 (68.46%), Query Frame = 1 Query: 61 RARKERVDSVSDTILEARRLHLRRIRDFEVDPETVEQLRKLGLGRRKQPLDNRAFTKKW-LNNKQVATGMGAGGFAVHLGSASKDWPMFKHNLPEVALAGHTNCGKSTLVNALAGIHPRQGLAGVSERAGWTDFVSFYQIGKKPPVLTLVDLPGYGHAVANRSMQREWRRMTKDYLSGQRRQLCRCCVLVDATRGLAEEDRILLAHLERRGIEHQLVLTKGDLLLPEQLAQSMAAVTQDLMDI-GAKLLAKPPILPVCGHTGAGVTALWENMRTRSLREPGSLVSSIEA---ARRVRE 939 R RKER DSV+D+I++ R HL R+ EVD + + LG RK+P F K + KQV + AGGFA +GSASK WP F+H LPEVALAGHTNCGKSTLVNAL+GIHPR+G A S+RAGWTD V FYQ+GKKPPVLT+VDLPGYGHAVA R + W RM K+Y++ R++L RCCVLVD TRG EEDR LL L +R I +Q+VLTK DLL PE L+ + + +DL D+ G + + P VCG +GAGVT LW+++ ++ + PGSLV+ A AR+ RE Sbjct: 106 RGRKERRDSVTDSIVKEREQHLVRLAKAEVDTAMAKTFKASSLGSRKRPRQAGGFNKAYDRTGKQVHSDFAAGGFARWMGSASKGWPTFRHRLPEVALAGHTNCGKSTLVNALSGIHPRRGPASTSDRAGWTDLVGFYQVGKKPPVLTMVDLPGYGHAVATRHAIKGWLRMIKEYIT-TRQELIRCCVLVDCTRGFCEEDRALLQLLAKRNIPYQIVLTKADLLTPELLSACVLLLRRDLSDLCGQEAGSTAPFSAVCGTSGAGVTTLWKDLAKQAAKAPGSLVAMQAAHLAARKARE 402
BLAST of jgi.p|Trimin1|164295 vs. uniprot
Match: A0A4D9CU55_9STRA (EngB-type G domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CU55_9STRA) HSP 1 Score: 213 bits (541), Expect = 2.900e-63 Identity = 122/241 (50.62%), Postives = 162/241 (67.22%), Query Frame = 1 Query: 100 ILEARRLHLRRI----RDFEV---DPETVEQLRKLGLGRRKQPLDNRAFTKKWLNNKQVATGMGAGGFAVHLGSAS----KDWPMFKHNLPEVALAGHTNCGKSTLVNALAGIHPRQGLAGVSERAGWTDFVSFYQIGKKPPVLTLVDLPGYGHAVANRSMQREWRRMTKDYLSGQRRQLCRCCVLVDATRGLAEEDRILLAHLERRGIEHQLVLTKGDLLLPEQLAQSMAAVTQDLMDIG 789 +LE RR HL RI R+ E DPE + ++ +LGLG++++ D + + + + +GA GFA + +AS + WP FKH LPEVA AGH+NCGKS+LVNA+AG+ PR+G+A VS+RAGWTD V FYQ+G+KPPVLTL DLPGYGHAVA+ +R WR MT+ YL+ RR L CCVLVD RGL ED LL L R + ++VLTKGDLL LA+S + V +D+ ++G Sbjct: 1 MLEDRRRHLARIAALAREDEAEGPDPEILRRINELGLGQKQRGKDTARYRRGPKDMTAGPSQIGATGFATFMAAASGRGSEGWPFFKHMLPEVAFAGHSNCGKSSLVNAVAGMVPRRGVARVSDRAGWTDAVFFYQLGRKPPVLTLADLPGYGHAVASVQQKRRWREMTQSYLA-TRRVLSVCCVLVDCVRGLCREDGDLLKALRARDVAVKVVLTKGDLLDEMDLARSHSLVVRDMREMG 240
BLAST of jgi.p|Trimin1|164295 vs. uniprot
Match: A0A7S3M560_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M560_9STRA) HSP 1 Score: 219 bits (559), Expect = 4.580e-63 Identity = 123/244 (50.41%), Postives = 162/244 (66.39%), Query Frame = 1 Query: 55 HRRARKERVDSVSDTILEARRLHLRRIRDFEVDPETVEQLRKLGLGRRKQPLDNRAFTKKWLNNKQVA---TGMGAGGFAVHLGSASKDWPMFKHNLPEVALAGHTNCGKSTLVNALAGIHPRQGLAGVSERAGWTDFVSFYQIGKKPPVLTLVDLPGYGHAVANRSMQREWRRMTKDYLSGQRRQLCRCCVLVDATRGLAEEDRILLAHLERRGIEHQLVLTKGDLLLPEQLAQSMAAVTQDL 777 H R +ER DSV++ IL R+ H++R+ + V L GLG R++ ++ ++ ++ V T GAGGFA+HL S S+DWP+FKH LPE+A AGH+N GKSTLVNA+ G+ P +G A VSERAGWTD + FYQ+GKKPPV+TL DLPGYGHAVA+ +R W M +DYL R L RCC+LVD+TRGL + D++L+ L + I +VLTKGDLL LAQ + AV DL Sbjct: 53 HGRGNRERRDSVTNEILWERQQHMKRLGRLPANQALVRALEDEGLGSRRRK--HQVYSHITVHEPGVIKKKTNSGAGGFALHLTSTSRDWPIFKHLLPEIAFAGHSNSGKSTLVNAMIGVLPSKGPAKVSERAGWTDQICFYQLGKKPPVMTLADLPGYGHAVASAGQRRAWGEMIRDYLQN-RTILSRCCILVDSTRGLCKGDKMLVRFLTKYDIPWMVVLTKGDLLDCTSLAQCVLAVQLDL 293
BLAST of jgi.p|Trimin1|164295 vs. uniprot
Match: A0A8J6CDF0_DIALT (EngB-type G domain-containing protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J6CDF0_DIALT) HSP 1 Score: 145 bits (366), Expect = 2.780e-37 Identity = 92/192 (47.92%), Postives = 116/192 (60.42%), Query Frame = 1 Query: 310 DWPMFKHNLPEVALAGHTNCGKSTLVNALAGIHPRQGLAGVSERAGWTDFVSFYQI-----GKKPPVLTLVDLPGYGHAVANRSMQREWRRMTKDYLSGQRRQLCRCCVLVDATRGLAEEDRILLAHLERRGIEHQLVLTKGDLLLPEQLAQSMAAVTQDLMDIGAKLLAKPPILPVCGHTGAGVTALWENM 870 DWP LPEVAL G +N GKS+L+NA G +GLA VS RAGWT +SF+++ G+ P LVD+PGYG AVA+ S +R WRR + YLS R L +LVDA RGL EDR LLA L R G H LVLT+ DLL P QLA+ V+ +L ++ + A P++ V TG GV LWE + Sbjct: 128 DWPD-GGGLPEVALVGQSNSGKSSLLNAFLGSISGEGLAPVSARAGWTAHLSFFRLSAELAGEFAPRFVLVDMPGYGDAVADTSTRRTWRRAIRAYLS-HRPALLSVLLLVDAERGLETEDRELLARLVRAGTPHALVLTRCDLLSPLQLARCHYRVSDELGELNSAAAADVPMISVL--TGVGVRELWERL 315
BLAST of jgi.p|Trimin1|164295 vs. uniprot
Match: A0A8J5X8C3_DIALT (EngB-type G domain-containing protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5X8C3_DIALT) HSP 1 Score: 141 bits (355), Expect = 1.450e-35 Identity = 103/278 (37.05%), Postives = 140/278 (50.36%), Query Frame = 1 Query: 67 RKERVDSVSDTILEARRLHLRRIRDFEVDPETVEQLRKLGLGRRKQPLDNRAFTKKWLNNKQVATGMGAGGFAVHLGSASKDWPMFKHNLPEVALAGHTNCGKSTLVNALAGIHPRQGLAGVSERAGWTDFVSFYQIGKKPPVLTLVDLPGYGHAVANRSMQREWRRMTKDYLSGQRRQLCRCCVLVDATRGLAEEDRILLAHLERRGIEHQLVLTKGDLLLPEQLAQSMAAVTQDLMD-----IGAKLLAKPPILPVCGHTGAGVTALWENMRTRSL 885 R ER DSV DT+L R H R+ + + D + Q+ L LGR + +A K + V+ G S + LPEVALAG++N GKS+L+NAL G+ ++G A V RAGWT+ V ++ + L LVD PGYG AV ++ + W R Y+ + C +LVD TRGL E D L+ RRG+ Q+VLTK DLL LA+S A VT DL + IGA+ P + V + GV LW R +L Sbjct: 27 RNERTDSVDDTVLRERARHAERMEEVDPDTRVLGQISALKLGRPPGWCNQKAVVAKQRARQAVSVVRALGR------SLDNAATLNVLGLPEVALAGYSNSGKSSLLNALTGLPAQRGPASVDSRAGWTESVFAFEAVVRGVSLALVDTPGYGVAVQSQWTRARWERALHAYVQNSEQLRC-VLLLVDCTRGLCEHDWRLMRTARRRGVVCQIVLTKADLLTAPLLARSHAVVTADLHERHGGEIGARA---PAVAMVSANFVQGVRQLWSLARHHAL 294
BLAST of jgi.p|Trimin1|164295 vs. uniprot
Match: R1EQK4_EMIHU (GTP-binding protein n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=R1EQK4_EMIHU) HSP 1 Score: 130 bits (328), Expect = 2.630e-31 Identity = 110/303 (36.30%), Postives = 151/303 (49.83%), Query Frame = 1 Query: 31 DLDDLTARHRRARKERVDSVSDTILEARRLHLRRIRDFE-VDPETVEQLRKLGLGRRKQPLDNRAFT--KKWLNNKQVATGMGAGGFAVHLGSASKDWPMFKHN-LPEVALAGHTNCGKSTLVNALAGIHPRQGLAGVSERAGWTDFVSFYQIGKKPPV----------LTLVDLPGYGHAVANRSMQREWRRMTKDYLSGQRRQLCRCCVLVDATRGLAEEDRILLAHLERRGIEHQLVLTKGDLLLPEQLAQSMAAVTQDLMDIGAKLLAKP---------PILPVCGHTGAGVTALWENM 870 +L++L R +R R ER DS+S+ + E R +H RI + E DP + ++ L LGRRK D + + K + + G G A +D N PEVAL GH+NCGKS L+NAL G R+G A V RAGWT + FY + + L LVD PGYGHAVA R WR + + Y+S L +LVD +RGL D +L L +R + VLTK DLL P +LA+S A V+ + D + A P P+L + H +G+ LWE + Sbjct: 27 ELEELKRRAKR-RSERADSLSEQMREERVMHALRIANCEGPDPAVLREIETLKLGRRKHWHDQKRASQLKARVARRHAFEAQEVGKTG---GLALEDLDKGNRNGRPEVALLGHSNCGKSALLNALIGAKARRGPAEVDSRAGWTMRLHFYWARPRGLLDEAHAGSQQGLVLVDTPGYGHAVAGAKELRHWRDLIEAYVSSSP-SLRLALLLVDCSRGLCAADGRVLRLLRKRRVPTFAVLTKCDLLPPAELARSHAIVSAQV-DEALRNGAAPSRADAAPAVPLLMLSSHFYSGIDGLWERL 323
BLAST of jgi.p|Trimin1|164295 vs. uniprot
Match: A0A2W6VFB7_SPHSX (Probable GTP-binding protein EngB n=1 Tax=Sphingomonas sp. TaxID=28214 RepID=A0A2W6VFB7_SPHSX) HSP 1 Score: 123 bits (308), Expect = 4.590e-30 Identity = 77/176 (43.75%), Postives = 105/176 (59.66%), Query Frame = 1 Query: 331 NLPEVALAGHTNCGKSTLVNALAGIHPRQGLAGVSERAGWTDFVSFYQIGKKPPVLTLVDLPGYGHAVANRSMQREWRRMTKDYLSGQRRQLCRCCVLVDATRGLAEEDRILLAHLERRGIEHQLVLTKGDLLLPEQLAQSMAAVTQDLMDIGAKLLAKPPILPVCGHTGAGVTAL 858 +LPEVA AG +N GKS+L+NAL G RQGLA S G T ++ + +G+ PPVL LVD+PGYG+A A + + REW R+ DYL G R L R VLVD+ GL D+ ++ L++ + +Q+VLTK D + P LA AAV + A A P ++P T AG+ L Sbjct: 37 DLPEVAFAGRSNVGKSSLLNALTG---RQGLARTSNTPGRTQELNLFLVGE-PPVLRLVDMPGYGYAEAPKDLIREWGRLVNDYLRG-RPTLKRVLVLVDSRHGLKPVDKEIMELLDKAAVSYQIVLTKADKIKPTALAAVSAAVAEIARTHPA---AHPQLIPTSSETKAGIAEL 204
BLAST of jgi.p|Trimin1|164295 vs. uniprot
Match: A0A1I6K7M6_9SPHN (Probable GTP-binding protein EngB n=1 Tax=Sphingomonas jatrophae TaxID=1166337 RepID=A0A1I6K7M6_9SPHN) HSP 1 Score: 122 bits (305), Expect = 1.400e-29 Identity = 74/175 (42.29%), Postives = 101/175 (57.71%), Query Frame = 1 Query: 334 LPEVALAGHTNCGKSTLVNALAGIHPRQGLAGVSERAGWTDFVSFYQIGKKPPVLTLVDLPGYGHAVANRSMQREWRRMTKDYLSGQRRQLCRCCVLVDATRGLAEEDRILLAHLERRGIEHQLVLTKGDLLLPEQLAQSMAAVTQDLMDIGAKLLAKPPILPVCGHTGAGVTAL 858 LPEVA AG +N GKS+L+NAL G R GLA S G T ++F+ +G+ P V LVD+PGYG A A + M R W+ + DYL G R L RC VLVDA GL + DR L+ L++ + ++LV+TK D + P +LA+ A + + A P +L TG G+ L Sbjct: 42 LPEVAFAGRSNVGKSSLLNALTG---RNGLARTSNTPGRTQELNFFAVGE-PAVFRLVDMPGYGFAKAPKDMVRRWKHLVNDYLRG-RVVLKRCLVLVDARHGLKDVDRELMTMLDKAAVSYRLVMTKADKVKPTELARVQEATAAEARK---HVAAHPEVLATSSETGEGIAEL 208
BLAST of jgi.p|Trimin1|164295 vs. uniprot
Match: A0A154VYJ0_9PROT (Probable GTP-binding protein EngB n=2 Tax=Oceanibaculum pacificum TaxID=580166 RepID=A0A154VYJ0_9PROT) HSP 1 Score: 121 bits (303), Expect = 2.740e-29 Identity = 75/185 (40.54%), Postives = 111/185 (60.00%), Query Frame = 1 Query: 331 NLPEVALAGHTNCGKSTLVNALAGIHPRQGLAGVSERAGWTDFVSFYQIGKKPPVLTLVDLPGYGHAVANRSMQREWRRMTKDYLSGQRRQLCRCCVLVDATRGLAEEDRILLAHLERRGIEHQLVLTKGDLLLPEQLAQSMAAVTQDLMDIGAKLLAKPPILPVCGHTGAGVTALWENMRTRSL 885 +LPE+A AG +N GKS+LVNAL G R+ LA S G T ++F+++G++ L LVDLPG+G+A ++S + W + KDYL G R L R C+LVDA GL + DR L+A +++ + +Q+VLTK D P +LA + ++ +L + A P I P GAG+ AL + T +L Sbjct: 42 SLPEIAFAGRSNVGKSSLVNALTG---RKTLARTSNTPGRTQQLNFFKLGER---LLLVDLPGHGYAKVSKSQSKNWTFLVKDYLRG-RVALRRVCLLVDARHGLKDNDRELMALMDKAAVVYQVVLTKTDKTKPAELAAMIETLSAEL---SKRTAAYPVIFPTSALEGAGIEALRAELATLAL 216 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|164295 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_5410 ID=mRNA_5410|Name=jgi.p|Trimin1|164295|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=990bp|location=Sequence derived from alignment at Contig_30:766292..769030- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. GCTAACAATGAAGATCATGTCGAATATGACGATCTGGACGACCTCACCGCback to top protein sequence of jgi.p|Trimin1|164295 >Trimin1|164295|e_gw1.30.178.1 ID=Trimin1|164295|e_gw1.30.178.1|Name=jgi.p|Trimin1|164295|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=330bp ANNEDHVEYDDLDDLTARHRRARKERVDSVSDTILEARRLHLRRIRDFEVback to top mRNA from alignment at Contig_30:766292..769030- Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_5410 ID=mRNA_5410|Name=jgi.p|Trimin1|164295|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2739bp|location=Sequence derived from alignment at Contig_30:766292..769030- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_30:766292..769030- >mRNA_5410 ID=mRNA_5410|Name=jgi.p|Trimin1|164295|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=990bp|location=Sequence derived from alignment at Contig_30:766292..769030- (Tribonema minus UTEX_B_3156 )back to top |