mRNA_541 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|156894
Unique NamemRNA_541
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
[Close]
BLAST of jgi.p|Trimin1|156894 vs. uniprot
Match: A0A835Z3L4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3L4_9STRA)

HSP 1 Score: 627 bits (1618), Expect = 6.180e-227
Identity = 322/322 (100.00%), Postives = 322/322 (100.00%), Query Frame = 1 
Query:    1 MDLDDVTAAIRVDTATNKGSVIDVIKIVQSCNASDASTYCKRLLDDIGTDLGTRCVQLRINSKGRLTPCADAKTLVEIVWSLPGKAAREFRRQSAANVCRVLGGDLSIVQEVEARHHALQQTEGGRAAQKFLLEDSESSVGGEMISGLPLELALANETQKSAYFEARMREEAAIATKKARAQFAVEGYELLRSMGAADHRDCITFSDAVRRAVTDGGGAAVVEARALAADDPTIPTPQCDPFYRGEEISMHTVAHEMRVKIPEQGEGRIGKRMKALYTERYGDAAAANIPTRNIEFRGQIWPANSYWARDADLMKRAVQSVL 966
            MDLDDVTAAIRVDTATNKGSVIDVIKIVQSCNASDASTYCKRLLDDIGTDLGTRCVQLRINSKGRLTPCADAKTLVEIVWSLPGKAAREFRRQSAANVCRVLGGDLSIVQEVEARHHALQQTEGGRAAQKFLLEDSESSVGGEMISGLPLELALANETQKSAYFEARMREEAAIATKKARAQFAVEGYELLRSMGAADHRDCITFSDAVRRAVTDGGGAAVVEARALAADDPTIPTPQCDPFYRGEEISMHTVAHEMRVKIPEQGEGRIGKRMKALYTERYGDAAAANIPTRNIEFRGQIWPANSYWARDADLMKRAVQSVL
Sbjct:    1 MDLDDVTAAIRVDTATNKGSVIDVIKIVQSCNASDASTYCKRLLDDIGTDLGTRCVQLRINSKGRLTPCADAKTLVEIVWSLPGKAAREFRRQSAANVCRVLGGDLSIVQEVEARHHALQQTEGGRAAQKFLLEDSESSVGGEMISGLPLELALANETQKSAYFEARMREEAAIATKKARAQFAVEGYELLRSMGAADHRDCITFSDAVRRAVTDGGGAAVVEARALAADDPTIPTPQCDPFYRGEEISMHTVAHEMRVKIPEQGEGRIGKRMKALYTERYGDAAAANIPTRNIEFRGQIWPANSYWARDADLMKRAVQSVL 322
[Close]
BLAST of jgi.p|Trimin1|156894 vs. uniprot
Match: A0A835YWG0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWG0_9STRA)

HSP 1 Score: 408 bits (1048), Expect = 4.670e-140
Identity = 217/326 (66.56%), Postives = 256/326 (78.53%), Query Frame = 1 
Query:    1 MDLDDVTAAIRVDTATNKGSVIDVIKIVQSCNASDASTYCKRLLDDIGTDLGTRCVQLRINSKGRLTPCADAKTLVEIVWSLPGKAAREFRRQSAANVCRVLGGDLSIVQEVEARHHALQQTEGGRAAQKFLLEDSES---SVGGEMISGLPLELALANETQKSAYFEARMREEAAIATKKARAQFAVEGYELLRSMGAADHRDCITFSDAVRRAVTDGGGAA--VVEARALAADDPTIPTPQCDPFYRGEEISMHTVAHEMRVKIPEQGEGRIGKRMKALYTERYGDAAAANIPTRNIEFRGQIWPANSYWARDADLMKRAVQSV 963
            MDL +VTAAIRVDTATNKGSVIDVIKIVQSCNASDASTYCKRLLDD+GT +GTRC QLRIN KG+LT CADAKTLVEIVWSLPGKAAREFRR SA  VCRVLGGDLSIV+EVEARHHALQ T GGRAAQ FLL D  S   +   E      +   +    +++    +RMR+ A+IATKKA A+FAV+ YE+LRSMGAAD RD ITFSDAVRR V +GGGAA  +VEA A+ ADDPT+PT  CD +YRGEEISMH+V+ +  ++I    EG +G+ +KALY +RYG+AAAA +  RN+ F GQI+  N+YWARD DLMK+A+ +V
Sbjct:    1 MDLANVTAAIRVDTATNKGSVIDVIKIVQSCNASDASTYCKRLLDDVGTHIGTRCTQLRINGKGKLTFCADAKTLVEIVWSLPGKAAREFRRTSAKTVCRVLGGDLSIVREVEARHHALQSTGGGRAAQDFLLGDESSGSEAPAEERTLARTIGEVMRRNNKQAELDLSRMRDNASIATKKACAEFAVDSYEMLRSMGAADDRDRITFSDAVRRIVAEGGGAAGAIVEAGAVPADDPTVPTSDCDAYYRGEEISMHSVSSKYSLRIGNGREGAVGRAVKALYLKRYGEAAAAKMVKRNVPFHGQIYGENTYWARDEDLMKQAIVAV 326
[Close]
BLAST of jgi.p|Trimin1|156894 vs. uniprot
Match: A0A835YX96_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YX96_9STRA)

HSP 1 Score: 394 bits (1011), Expect = 3.170e-134
Identity = 217/342 (63.45%), Postives = 254/342 (74.27%), Query Frame = 1 
Query:    1 MDLDDVTAAIRVDTATNKGSVIDVIKIVQSCNASDASTYCKRLLDDIGTDLGTRCVQLRINSKGRLTPCADAKTLVEIVWSLPGKAAREFRRQSAANVCRVLGGDLSIVQEVEARHHALQQTEGGRAAQKFLLEDSESSVGG----EMISGLPLELALANETQKSAYFEA--------------RMREEAAIATKKARAQFAVEGYELLRSMGAADHRDCITFSDAVRRAVTDGGG--AAVVEARALAADDPTIPTPQCDPFYRGEEISMHTVAHEMRVKIPEQGEGRIGKRMKALYTERYGDAAAANIPTRNIEFRGQIWPANSYWARDADLMKRAVQSVL 966
            MDL +VTA+IRVD AT  GSVIDVI++V       A+T     L      L      +RIN KG+ TPCA A+ LVE+V+ LPGKAAR+FRR SA  VCRVLGGDLSIV EVEARHHALQQTEGGRAAQ+FLL D ESS  G      +  LP+EL LA++ ++SAYF+A              R R+EAA+A KKARAQFAVE YELLR+MG AD RD ITFSDAVRRAV DGGG   AVVEA A+  DDP +PTP+C+PFYRG+EISMHTVA EM VKIP   EGRIGK+M+ALY +RYG+AAAA+IP R+IEFRGQ++PAN+YW RDADLM+ AVQSVL
Sbjct:    1 MDLANVTASIRVDRATGLGSVIDVIRMVNPNQERTAATKAVAYLTADDETLRRSIQHVRINGKGKPTPCASARVLVEVVFLLPGKAARDFRRASATTVCRVLGGDLSIVGEVEARHHALQQTEGGRAAQEFLLRDDESSATGCGQVGQVRALPVELTLASQAERSAYFQAWSKRTNEEGDLILKRKRDEAALAAKKARAQFAVESYELLRTMGVADDRDRITFSDAVRRAVGDGGGDAEAVVEALAVGIDDPAVPTPECEPFYRGDEISMHTVASEMGVKIPHNSEGRIGKKMRALYRDRYGEAAAASIPKRSIEFRGQMFPANAYWKRDADLMRAAVQSVL 342
[Close]
BLAST of jgi.p|Trimin1|156894 vs. uniprot
Match: A0A835Z1W0_9STRA (Uncharacterized protein n=8 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1W0_9STRA)

HSP 1 Score: 276 bits (706), Expect = 3.140e-88
Identity = 164/329 (49.85%), Postives = 215/329 (65.35%), Query Frame = 1 
Query:    1 MDLDDVTAAIRVDTATNKGSVIDVIKIVQ-SCNASDASTYCKRLLDDIGTDLGTRCVQLRINSKGRLTPCADAKTLVEIVWSLPGKAAREFRRQSAANVCRVLGGDLSIVQEVEARHHALQQTEGGRAAQKFLLEDSESSVGGEMISGLPLELALANETQKSAYFEARMREEA-AIATKKARAQFAV--EGYELLRSMGAADHRDCITFSDAVRRAVT----DGGGAAVVEARALAADDPTIPTPQCDPFYRGEEISMHTVAHEMRVKIPEQGEGRIGKRMKALYTERYGDAAAANIPTRNIEFRGQIWPANSYWARDADLMKRAVQSV 963
            M+L D+ AAIR+D A+  GSV+DVI++V     ++ AS+  KRL  ++  D+ + C QLRIN  G+LTPCADA+TLVEIVWSLPGK AR FRR SA  VCRVLGGD+S+V E+E R  ALQ TE GRAAQ FL+ D    V  E    LP EL LA   Q++ +  + M E   A+  ++   Q A+   G++LL S G AD RD I F D VRR V     D G  A++ AR ++ DDP++ TP     +RG EISMH+VA EM V+I    E  IGK++KALY  +YG AAAA IP RN+ FRG+++  N+YW RD DLM+ A+++ 
Sbjct:    1 MELADIPAAIRIDLASGMGSVLDVIRLVNPEIPSNQASSTFKRLALEL-PDVASSCRQLRINGNGKLTPCADARTLVEIVWSLPGKPARAFRRTSATTVCRVLGGDVSLVNEIEGRCRALQATEVGRAAQDFLIGDGSVQVSRE----LPAELQLATPEQRTLFVASWMHERRLALIDREKTQQLALIKNGFDLLGSFGVADARDRIAFGDLVRRVVQPPAHDAG--ALIVARPMSEDDPSVATPLAQVAHRGPEISMHSVAAEMGVRIKAGTECLIGKKVKALYAIKYGTAAAAAIPKRNVPFRGKVFAENTYWKRDQDLMEEAIRTA 322
[Close]
BLAST of jgi.p|Trimin1|156894 vs. uniprot
Match: A0A835ZAN0_9STRA (Uncharacterized protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAN0_9STRA)

HSP 1 Score: 247 bits (630), Expect = 8.100e-71
Identity = 151/326 (46.32%), Postives = 196/326 (60.12%), Query Frame = 1 
Query:    1 MDLDDVTAAIRVDTATNKGSVIDVIKIVQ-SCNASDASTYCKRLLDDIGTDLGTRCVQLRINSKGRLTPCADAKTLVEIVWSLPGKAAREFRRQSAANVCRVLGGDLSIVQEVEARHHALQQTEGGRAAQKFLLEDSESSVGGEMISGLPLELALANETQKSAYFEARMREEAAIATKKARAQFAVEGYELLRSMGAADHRDCITFSDAVRRAVT----DGGGAAVVEARALAADDPTIPTPQCDPFYRGEEISMHTVAHEMRVKIPEQGEGRIGKRMKALYTERYGDAAAANIPTRNIEFRGQIWPANSYWARDADLMKRAVQSV 963
            ++L D+ AAIR++ A+  GSV+DVI++V     ++ AS+  KR+  ++  D+ + C QLRIN  G+LTPCADA+TLVEIV SLPGK AR FRR SA  VCRVLGGD+S+V E+E R  ALQ TE GRAAQ FL+ D    V  +    LP EL LA   Q++ +                               G AD RD I F D VRR V     D G  A++ AR ++ DDP++ TP     +RG EISM +VA EM V+I    E  IGK++KALY  +YG AAAA IP RNI FRGQI+  N+YW R+ D M+ A+ +V
Sbjct:  133 LELADIPAAIRINLASGMGSVLDVIRLVNPEIPSNQASSTFKRVATEL-PDMASSCCQLRINGNGKLTPCADARTLVEIVGSLPGKPARAFRRTSATTVCRVLGGDVSLVDEIEGRCRALQATEMGRAAQDFLIGDGSDQVSRD----LPAELQLATPEQRTFF-------------------------------GVADARDRIAFGDLVRRVVQPPAHDDG--ALIVARPMSEDDPSVATPSAHVAHRGPEISMQSVAAEMGVRIKAGTECLIGKKVKALYAIKYGTAAAAAIPKRNITFRGQIFAENTYWKRNQDHMEEAISTV 420
[Close]
BLAST of jgi.p|Trimin1|156894 vs. uniprot
Match: A0A835YN01_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YN01_9STRA)

HSP 1 Score: 200 bits (508), Expect = 1.290e-59
Identity = 130/322 (40.37%), Postives = 165/322 (51.24%), Query Frame = 1 
Query:    1 MDLDDVTAAIRVDTATNKGSVIDVIKIVQ-SCNASDASTYCKRLLDDIGTDLGTRCVQLRINSKGRLTPCADAKTLVEIVWSLPGKAAREFRRQSAANVCRVLGGDLSIVQEVEARHHALQQTEGGRAAQKFLLEDSESSVGGEMISGLPLELALANETQKSAYFEARMREEAAIATKKARAQFAVEGYELLRSMGAADHRDCITFSDAVRRAVTDGGGAAVVEARALAADDPTIPTPQCDPFYRGEEISMHTVAHEMRVKIPEQGEGRIGKRMKALYTERYGDAAAANIPTRNIEFRGQIWPANSYWARDADLMKRAVQSV 963
            M+L D  AAIR+D A+  GSV+DVI++V     ++ AS   KRL  ++  D+ + C QLRI   G+LTPCADA+TLVEIVWSLPGK AR FRR SA  VCRVLGGD+S+V E+E R  ALQ TE                                                                                        A  DG   A++ AR ++ DDP++PTP     ++G EISMH+VA EM V+I    E  IGK++KALY  +YG AAAA IP RNI FRGQI+  N+YW RD DLM+ A+ +V
Sbjct:    1 MELADTPAAIRIDLASGMGSVLDVIRLVNPEIPSNQASFTFKRLATEL-PDVASSCRQLRIYGNGKLTPCADARTLVEIVWSLPGKPARAFRRTSATTVCRVLGGDVSLVDEIEGRCRALQATEPP--------------------------------------------------------------------------------------AHDDG---ALIVARPMSEDDPSVPTPLAQVAHQGPEISMHSVAAEMGVRIKAGTECLIGKKVKALYAIKYGTAAAAAIPKRNIPFRGQIFAENTYWKRDQDLMEEAIHTV 232
[Close]
BLAST of jgi.p|Trimin1|156894 vs. uniprot
Match: B5LWM3_9PHYC (Uncharacterized protein n=1 Tax=Feldmannia species virus TaxID=39420 RepID=B5LWM3_9PHYC)

HSP 1 Score: 190 bits (483), Expect = 9.890e-55
Identity = 128/322 (39.75%), Postives = 173/322 (53.73%), Query Frame = 1 
Query:   16 VTAAIRVDTATNKGSVIDVIKIVQSCNASDASTYCKRLLDDI---GTDLGTRCVQLRINSKGRLTPCADAKTLVEIVWSLPGKAAREFRRQSAANVCRVLGGDLSIVQEVEARHHALQQTEGGRAAQKFLLEDSESSVGGEMISGLPLELALANETQKSAYFEARMREEAAIATKKARAQFAVEGYELLRSMGAA-DHRDCITFSDAVRRAVTDGGGAAVVEARALAADDPTIPTPQCDPFYRGEEISMHTVAHEMRVKIPEQGEGRIGKRMKALYTERYGDAAAAN-IPTRNIEFRGQIWPANSYWARDADLMKRAVQSVL 966
            V A IR+D AT KGSVIDVI++V  C+AS A+T  +RL DD+     + G  C  LRIN KGRLTP A+AKTLVEI++SLPGK AREFRR+SA+ +CR+LGGD ++V E+E R   L+ T  GR  Q FLL +S      +  +G+P+      E+Q+ A       E  A+A K+ R +  +  Y  LRS+G   D R  +   D V             E       DP  PT       RG E  +  VA +M V++P    G IGK MK LY ++Y      N    R   + G+    N Y+ RD D++  A++  L
Sbjct:    9 VNATIRIDNATQKGSVIDVIRMVLRCDASSANTAFRRLKDDMLKSRAEFGAACSHLRINGKGRLTPVANAKTLVEIIFSLPGKLAREFRRKSASQICRLLGGDPTLVFEIEQRRAELESTPKGRVTQAFLLGESRHDTDDDF-TGMPVGFRYLEESQRRAVAG----EVVALALKRQRIEDMIGSYASLRSLGVELDPRTMVEIRDNVSLLTKRKLSIEEREDSTTRLVDPKTPTHVLGREERGNESGIVVVASKMGVRVPPSMSGPIGKLMKILYKKKYDLPNDWNDFVKRQTLYLGRPVMENCYYERDEDIITEAIKLKL 325
[Close]
BLAST of jgi.p|Trimin1|156894 vs. uniprot
Match: B5LWM4_9PHYC (Uncharacterized protein n=1 Tax=Feldmannia species virus TaxID=39420 RepID=B5LWM4_9PHYC)

HSP 1 Score: 191 bits (485), Expect = 1.910e-54
Identity = 132/342 (38.60%), Postives = 184/342 (53.80%), Query Frame = 1 
Query:   22 AAIRVDTATNKGSVIDVIKIVQSCNASDASTYCKRL-LDDIGTDLGTRCVQLRINSKGRLTPCADAKTLVEIVWSLPGKAAREFRRQSAANVCRVLGGDLSIVQEVEARHHALQQTEGGRAAQKFLLEDSESSVGGEMISGLPLELALANETQKSAYFEARMREE----AAIATKKARAQFAVEGYEL----LRSMGAADHRDCITFSDAVR----RAVTDGG--------GAAVVEARALAADDPT-------IPTPQCDPFYRGEEISMHTVAHEMRVKIPEQGEGRIGKRMKALYTERYGDAAAANIPTRNIEFRGQIWPANSYWARDADLMKRAVQSV 963
            + IRVD  T  GSVID I++V  C++S+A+T   RL L   G  LG +  QL++N +G+ TP ADAKTL+EIVW LPG+ A  FR Q    +CR+LGGD S+V E+EARH  L  TE GRA Q+F L D+  ++        P ++      ++ ++F+    EE    A+    KA     VE Y+     L S+G    RD I F D VR    RA+  G            V+ A A   DD         + TP+C    RG E S+   A ++ + + E+G G IGK +   YT+RYG  A  NIP R   +RG+ +  N YW+RDADL++ A++ V
Sbjct:   28 STIRVDKNTKLGSVIDTIRMVLECDSSNANTSLGRLVLSHPG--LGEKYTQLKVNGRGKPTPVADAKTLIEIVWLLPGRRAHAFRCQRVGKICRLLGGDTSLVSEIEARHATLTGTEEGRATQEFFLNDNHVTIDQ------PDQVKELRSGEEPSWFKNATAEEKRAFASTMVNKAIVSEEVEMYDFCKAKLESVGQFTTRDMIEFGDRVRDAQRRALRAGNMMTSTPVDDTVVISAVARPVDDTIDSATGLPLATPECSESVRGVETSICNEAAKLGICVGEKG-GEIGKELIRRYTKRYGVEAGLNIPKRPTTYRGKPFNENCYWSRDADLVQEAIRIV 360
[Close]
BLAST of jgi.p|Trimin1|156894 vs. uniprot
Match: A0A6H5JW74_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW74_9PHAE)

HSP 1 Score: 199 bits (505), Expect = 1.540e-53
Identity = 129/323 (39.94%), Postives = 182/323 (56.35%), Query Frame = 1 
Query:   22 AAIRVDTATNKGSVIDVIKIVQSCNASDASTYCKRLLDDIGTDLGTRCVQLRINSKGRLTPCADAKTLVEIVWSLPGKAAREFRRQSAANVCRVLGGDLSIVQEVEARHHALQQTEGGRAAQKFLLEDSESSVGGEMISGLPLELALANETQKSAYFEARMR---EEAAIATKKARAQFAVEGYELLRSMGAA-DHRDCITFSDAVRRAVTDGGGAAVVEARALAAD---DPTIPTPQCDPFYRGEEISMHTVAHEMRVKIPEQGEGRIGKRMKALYTERYGDAAA-ANIPTRNIEFRGQIWPANSYWARDADLMKRAVQSVL 966
            A IRVD     GSVID I++V   ++S A+T   RL+     +LGTRC QLRIN KG+ TP ADAKTL+EIVW LPGK AREFRRQS+  VCR+LGGDLS+V E+EARH  LQ TE GRA Q+FLL + E +V  E   G+P          ++ + +  +    E + +A K+ R    V+ Y  L+ +G   D R  I   D V   +       V  A A+AA    D T PT +     RG+E  +  V+ ++ +++P+   G +GK MK +Y  +Y  A   +    R   F G+    N Y+ RD D+++ A+++V+
Sbjct:  907 ATIRVDKNEQVGSVIDTIRMVLGGDSSAANTSLNRLIL-ANEELGTRCTQLRINGKGKFTPVADAKTLIEIVWLLPGKKAREFRRQSSEKVCRLLGGDLSLVSEIEARHATLQSTEQGRATQEFLLGEREEAV--ETFDGMPAGFRYLPVEDRAQFAKQMLELNLEMSKVALKRKRVDDMVQSYRALQDLGVLLDGRTLIELRDNVT--ILSRQDVMVNNAVAIAAPLLHDSTTPTHELGADQRGKETGIVVVSSKIGIRVPQNMSGTVGKMMKQMYIRKYELAPDFSGFARRQTLFNGRPILENLYFERDEDIIEEAIRAVM 1224
[Close]
BLAST of jgi.p|Trimin1|156894 vs. uniprot
Match: A0A835YZ27_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZ27_9STRA)

HSP 1 Score: 179 bits (454), Expect = 7.860e-53
Identity = 94/142 (66.20%), Postives = 110/142 (77.46%), Query Frame = 1 
Query:    1 MDLDDVTAAIRVDTATNKGSVIDVIKIVQSCNASDASTYCKRLLDDIGTDLGTRCVQLRINSKGRLTPCADAKTLVEIVWSLPGKAAREFRRQSAANVCRVLGGDLSIVQEVEARHHALQQTEGGRAAQKFLLEDSESSVGG 426
            M+L ++TAAIRVDTATN+GSVIDVI++V   N +  S     +L ++  D+      LRIN+KG+ TPCADAKTLVEIVWSLPGKAAREFRR SA  VCRVLGGDLSIVQE+E RHH LQQTEGGRAAQ F+L DS+ S  G
Sbjct:    1 MELSNITAAIRVDTATNQGSVIDVIRLV---NPNPTSGNAANVLANLTKDVTLNYSHLRINAKGKPTPCADAKTLVEIVWSLPGKAAREFRRTSAKTVCRVLGGDLSIVQEIEKRHHTLQQTEGGRAAQAFMLADSDDSSDG 139
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|156894 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z3L4_9STRA6.180e-227100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YWG0_9STRA4.670e-14066.56Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YX96_9STRA3.170e-13463.45Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835Z1W0_9STRA3.140e-8849.85Uncharacterized protein n=8 Tax=Tribonema minus Ta... [more]
A0A835ZAN0_9STRA8.100e-7146.32Uncharacterized protein n=2 Tax=Tribonema minus Ta... [more]
A0A835YN01_9STRA1.290e-5940.37Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
B5LWM3_9PHYC9.890e-5539.75Uncharacterized protein n=1 Tax=Feldmannia species... [more]
B5LWM4_9PHYC1.910e-5438.60Uncharacterized protein n=1 Tax=Feldmannia species... [more]
A0A6H5JW74_9PHAE1.540e-5339.94Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YZ27_9STRA7.860e-5366.20Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_2contigContig_2:138043..139086 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|156894|e_gw1.2.334.1
Max annot lvl2880.D8LP49|-
EggNOG OGs2EUDG@1|root,2SWJG@2759|Eukaryota
Evalue8.19e-53
Seed ortholog2880.D8LP49
Hectar predicted targeting categoryother localisation
TranscriptId157216
TrackFilteredModels1
ProteinId156894
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|156894gene_541Tribonema minus UTEX_B_3156 geneContig_2 138043..139086 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_541_1exon_541_1Tribonema minus UTEX_B_3156 exonContig_2 138043..138539 +
exon_541_2exon_541_2Tribonema minus UTEX_B_3156 exonContig_2 138615..139086 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_541CDS_541Tribonema minus UTEX_B_3156 CDSContig_2 138043..138539 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|156894Trimin1|156894|e_gw1.2.334.1Tribonema minus UTEX_B_3156 polypeptideContig_2 138043..139086 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_541 ID=mRNA_541|Name=jgi.p|Trimin1|156894|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=969bp|location=Sequence derived from alignment at Contig_2:138043..139086+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGACCTTGACGACGTCACCGCAGCCATCCGGGTGGACACGGCAACAAA
TAAAGGGTCAGTCATTGATGTCATTAAGATTGTTCAGTCGTGCAATGCAA
GTGATGCTTCCACCTACTGCAAAAGACTGTTAGATGACATTGGGACAGAC
CTCGGGACCCGTTGTGTCCAGCTCCGGATCAACTCAAAAGGCCGACTCAC
CCCCTGTGCGGACGCAAAGACCCTCGTCGAAATTGTATGGTCTCTGCCGG
GCAAGGCCGCGCGCGAGTTTCGGCGCCAGTCGGCCGCCAACGTCTGCCGC
GTGCTCGGGGGTGACCTCTCAATCGTGCAGGAGGTGGAGGCACGCCACCA
CGCGCTGCAGCAGACGGAAGGTGGGAGGGCAGCCCAGAAGTTTCTACTTG
AGGATAGCGAGAGCTCCGTAGGTGGCGAGATGATTAGCGGACTGCCGTTG
GAACTCGCGTTGGCCAATGAGACCCAAAAGAGCGCATACTTTGAAGCCAG
AATGAGAGAGGAGGCTGCGATCGCCACCAAGAAGGCGCGTGCGCAATTTG
CGGTGGAGGGTTACGAGCTGCTGCGCTCCATGGGTGCCGCCGATCATCGC
GACTGTATCACGTTCTCAGATGCTGTTAGGCGTGCTGTCACCGACGGCGG
AGGGGCTGCTGTCGTAGAAGCGAGGGCCTTGGCGGCAGACGATCCCACCA
TTCCCACTCCCCAGTGTGACCCGTTCTACAGAGGTGAGGAGATCAGCATG
CACACCGTCGCGCATGAAATGAGGGTGAAGATCCCTGAGCAGGGTGAGGG
TCGCATTGGTAAACGCATGAAAGCGCTGTACACTGAACGGTACGGCGACG
CGGCCGCAGCGAACATACCCACGCGCAACATCGAATTCCGTGGCCAGATT
TGGCCCGCCAACTCGTACTGGGCGCGCGACGCTGATCTCATGAAGCGAGC
CGTGCAGAGCGTGCTTTGA
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protein sequence of jgi.p|Trimin1|156894

>Trimin1|156894|e_gw1.2.334.1 ID=Trimin1|156894|e_gw1.2.334.1|Name=jgi.p|Trimin1|156894|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=323bp
MDLDDVTAAIRVDTATNKGSVIDVIKIVQSCNASDASTYCKRLLDDIGTD
LGTRCVQLRINSKGRLTPCADAKTLVEIVWSLPGKAAREFRRQSAANVCR
VLGGDLSIVQEVEARHHALQQTEGGRAAQKFLLEDSESSVGGEMISGLPL
ELALANETQKSAYFEARMREEAAIATKKARAQFAVEGYELLRSMGAADHR
DCITFSDAVRRAVTDGGGAAVVEARALAADDPTIPTPQCDPFYRGEEISM
HTVAHEMRVKIPEQGEGRIGKRMKALYTERYGDAAAANIPTRNIEFRGQI
WPANSYWARDADLMKRAVQSVL*
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mRNA from alignment at Contig_2:138043..139086+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_541 ID=mRNA_541|Name=jgi.p|Trimin1|156894|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1044bp|location=Sequence derived from alignment at Contig_2:138043..139086+ (Tribonema minus UTEX_B_3156 )
ATGGACCTTGACGACGTCACCGCAGCCATCCGGGTGGACACGGCAACAAA
TAAAGGGTCAGTCATTGATGTCATTAAGATTGTTCAGTCGTGCAATGCAA
GTGATGCTTCCACCTACTGCAAAAGACTGTTAGATGACATTGGGACAGAC
CTCGGGACCCGTTGTGTCCAGCTCCGGATCAACTCAAAAGGCCGACTCAC
CCCCTGTGCGGACGCAAAGACCCTCGTCGAAATTGTATGGTCTCTGCCGG
GCAAGGCCGCGCGCGAGTTTCGGCGCCAGTCGGCCGCCAACGTCTGCCGC
GTGCTCGGGGGTGACCTCTCAATCGTGCAGGAGGTGGAGGCACGCCACCA
CGCGCTGCAGCAGACGGAAGGTGGGAGGGCAGCCCAGAAGTTTCTACTTG
AGGATAGCGAGAGCTCCGTAGGTGGCGAGATGATTAGCGGACTGCCGTTG
GAACTCGCGTTGGCCAATGAGACCCAAAAGAGCGCATACTTTGAAGCGTG
GAACAAGAGGACCGGAGAGCAGGCTGAGCTCGAGCTGAGCAGCAAGAGAG
AGCAGGCAGAGATAGAGCTGAGCAGAATGAGAGAGGAGGCTGCGATCGCC
ACCAAGAAGGCGCGTGCGCAATTTGCGGTGGAGGGTTACGAGCTGCTGCG
CTCCATGGGTGCCGCCGATCATCGCGACTGTATCACGTTCTCAGATGCTG
TTAGGCGTGCTGTCACCGACGGCGGAGGGGCTGCTGTCGTAGAAGCGAGG
GCCTTGGCGGCAGACGATCCCACCATTCCCACTCCCCAGTGTGACCCGTT
CTACAGAGGTGAGGAGATCAGCATGCACACCGTCGCGCATGAAATGAGGG
TGAAGATCCCTGAGCAGGGTGAGGGTCGCATTGGTAAACGCATGAAAGCG
CTGTACACTGAACGGTACGGCGACGCGGCCGCAGCGAACATACCCACGCG
CAACATCGAATTCCGTGGCCAGATTTGGCCCGCCAACTCGTACTGGGCGC
GCGACGCTGATCTCATGAAGCGAGCCGTGCAGAGCGTGCTTTGA
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Coding sequence (CDS) from alignment at Contig_2:138043..139086+

>mRNA_541 ID=mRNA_541|Name=jgi.p|Trimin1|156894|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=969bp|location=Sequence derived from alignment at Contig_2:138043..139086+ (Tribonema minus UTEX_B_3156 )
ATGGACCTTGACGACGTCACCGCAGCCATCCGGGTGGACACGGCAACAAA
TAAAGGGTCAGTCATTGATGTCATTAAGATTGTTCAGTCGTGCAATGCAA
GTGATGCTTCCACCTACTGCAAAAGACTGTTAGATGACATTGGGACAGAC
CTCGGGACCCGTTGTGTCCAGCTCCGGATCAACTCAAAAGGCCGACTCAC
CCCCTGTGCGGACGCAAAGACCCTCGTCGAAATTGTATGGTCTCTGCCGG
GCAAGGCCGCGCGCGAGTTTCGGCGCCAGTCGGCCGCCAACGTCTGCCGC
GTGCTCGGGGGTGACCTCTCAATCGTGCAGGAGGTGGAGGCACGCCACCA
CGCGCTGCAGCAGACGGAAGGTGGGAGGGCAGCCCAGAAGTTTCTACTTG
AGGATAGCGAGAGCTCCGTAGGTGGCGAGATGATTAGCGGACTGCCGTTG
GAACTCGCGTTGGCCAATGAGACCCAAAAGAGCGCATACTTTGAAGCCAG
AATGAGAGAGGAGGCTGCGATCGCCACCAAGAAGGCGCGTGCGCAATTTG
CGGTGGAGGGTTACGAGCTGCTGCGCTCCATGGGTGCCGCCGATCATCGC
GACTGTATCACGTTCTCAGATGCTGTTAGGCGTGCTGTCACCGACGGCGG
AGGGGCTGCTGTCGTAGAAGCGAGGGCCTTGGCGGCAGACGATCCCACCA
TTCCCACTCCCCAGTGTGACCCGTTCTACAGAGGTGAGGAGATCAGCATG
CACACCGTCGCGCATGAAATGAGGGTGAAGATCCCTGAGCAGGGTGAGGG
TCGCATTGGTAAACGCATGAAAGCGCTGTACACTGAACGGTACGGCGACG
CGGCCGCAGCGAACATACCCACGCGCAACATCGAATTCCGTGGCCAGATT
TGGCCCGCCAACTCGTACTGGGCGCGCGACGCTGATCTCATGAAGCGAGC
CGTGCAGAGCGTGCTTTGA
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