mRNA_540 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|149258
Unique NamemRNA_540
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|149258 vs. uniprot
Match: A0A835Z393_9STRA (FirrV-1-A34 (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z393_9STRA)

HSP 1 Score: 256 bits (653), Expect = 1.820e-86
Identity = 122/122 (100.00%), Postives = 122/122 (100.00%), Query Frame = 1
Query:    1 VCRLMGGDMRIIAEVVARHKWWQETAARREVQQALLAPPPAGRWDEFSGTSDTTRECDVRDDLALALGGSIEIETPAGFADVITATHVIEVKNWRNWKHALGQVLAYHAFASDKRMRIHLFA 366
            VCRLMGGDMRIIAEVVARHKWWQETAARREVQQALLAPPPAGRWDEFSGTSDTTRECDVRDDLALALGGSIEIETPAGFADVITATHVIEVKNWRNWKHALGQVLAYHAFASDKRMRIHLFA
Sbjct:    1 VCRLMGGDMRIIAEVVARHKWWQETAARREVQQALLAPPPAGRWDEFSGTSDTTRECDVRDDLALALGGSIEIETPAGFADVITATHVIEVKNWRNWKHALGQVLAYHAFASDKRMRIHLFA 122          
BLAST of jgi.p|Trimin1|149258 vs. uniprot
Match: A0A835YUG7_9STRA (FirrV-1-A34 (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUG7_9STRA)

HSP 1 Score: 186 bits (473), Expect = 6.020e-59
Identity = 94/127 (74.02%), Postives = 102/127 (80.31%), Query Frame = 1
Query:    1 VCRLMGGDMRIIAEVVARHKWWQETAARREVQQALLAPPPAGRWDEFSGTSD-----TTRECDVRDDLALALGGSIEIETPAGFADVITATHVIEVKNWRNWKHALGQVLAYHAFASDKRMRIHLFA 366
            VCRLMG DM+IIAEV AR++WWQ T AR EVQQALL   PA  WDE SGT D     + RE DVRDDLALAL GSIE+ETPAGFADV+TAT VI+VK WRNWKH+LGQVLAYHAF SDK  RIHLFA
Sbjct:    1 VCRLMGRDMKIIAEVEARNEWWQATPARSEVQQALLGALPARSWDEHSGTDDIARERSVREHDVRDDLALALDGSIEMETPAGFADVVTATEVIKVKAWRNWKHSLGQVLAYHAFMSDKSKRIHLFA 127          
BLAST of jgi.p|Trimin1|149258 vs. uniprot
Match: A0A835YW01_9STRA (FirrV-1-A34 (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YW01_9STRA)

HSP 1 Score: 182 bits (463), Expect = 1.950e-57
Identity = 92/125 (73.60%), Postives = 101/125 (80.80%), Query Frame = 1
Query:    7 RLMGGDMRIIAEVVARHKWWQETAARREVQQALLAPPPAGRWDEFSGTSDTT-----RECDVRDDLALALGGSIEIETPAGFADVITATHVIEVKNWRNWKHALGQVLAYHAFASDKRMRIHLFA 366
            RLMGGDMRIIAEV AR++WWQ T ARREVQQ LLA PPA  W + +G  DT      RE DVRDDLALAL GSIE+++PAGFADV+TAT VIEVK+ RNWKHALGQVLAYHAF SDK  RIHLFA
Sbjct:    1 RLMGGDMRIIAEVAARNEWWQATPARREVQQTLLAAPPAHSWGDHTGMDDTACERSVRERDVRDDLALALDGSIEMKSPAGFADVVTATEVIEVKSCRNWKHALGQVLAYHAFMSDKSKRIHLFA 125          
BLAST of jgi.p|Trimin1|149258 vs. uniprot
Match: A0A835YNY8_9STRA (FirrV-1-A34 (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNY8_9STRA)

HSP 1 Score: 171 bits (433), Expect = 6.380e-53
Identity = 82/122 (67.21%), Postives = 95/122 (77.87%), Query Frame = 1
Query:    1 VCRLMGGDMRIIAEVVARHKWWQETAARREVQQALLAPPPAGRWDEFSGTSDTTRECDVRDDLALALGGSIEIETPAGFADVITATHVIEVKNWRNWKHALGQVLAYHAFASDKRMRIHLFA 366
            VCRLM GDM+IIAEV  R+ WWQ T AR EVQ+ LLA  P     + + + DTTRE DVRD+LALAL G+IE++  AGFADV+TAT VIE+K+WR WKHALGQVLAYHAF SDK  RIHLFA
Sbjct:    1 VCRLMSGDMKIIAEVAVRNAWWQATPARCEVQRTLLASSPISAHSDDADSDDTTRERDVRDELALALAGNIEVQMSAGFADVVTATEVIEIKHWRTWKHALGQVLAYHAFMSDKSKRIHLFA 122          
BLAST of jgi.p|Trimin1|149258 vs. uniprot
Match: D7G319_ECTSI (FirrV-1-A34 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G319_ECTSI)

HSP 1 Score: 108 bits (271), Expect = 4.620e-28
Identity = 54/122 (44.26%), Postives = 75/122 (61.48%), Query Frame = 1
Query:    1 VCRLMGGDMRIIAEVVARHKWWQETAARREVQQALLAPPPAGRWDEFSGTSDTTRECDVRDDLALALGGSIEIETPAGFADVITATHVIEVKNWRNWKHALGQVLAYHAFASDKRMRIHLFA 366
            +CR+MGGD+ ++ E+   +  W+       +QQAL+ P      ++    S + +EC VRD LA  +GG  E+ETPAG  DV++ T VIEVK ++ WKH LGQVLAYH F      R+HLFA
Sbjct:    1 MCRVMGGDLALLKEIEQNNLTWRSVEGGPAIQQALIEPIEYQHVEK----STSVKECWVRDALASLVGGEPEVETPAGNIDVLSGTEVIEVKYYKQWKHGLGQVLAYHCFHPSLAKRLHLFA 118          
BLAST of jgi.p|Trimin1|149258 vs. uniprot
Match: A0A6H5L807_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L807_9PHAE)

HSP 1 Score: 75.5 bits (184), Expect = 1.680e-13
Identity = 37/68 (54.41%), Postives = 46/68 (67.65%), Query Frame = 1
Query:  163 RECDVRDDLALALGGSIEIETPAGFADVITATHVIEVKNWRNWKHALGQVLAYHAFASDKRMRIHLFA 366
            +E  VRD LA  +GG  E ETP GF DV++ T VIEVK ++ W+ ALGQVLAY A+      R+HLFA
Sbjct:  205 KESSVRDALASIVGGETEKETPVGFIDVLSDTEVIEVKYYKQWRGALGQVLAYQAYYPGLAKRVHLFA 272          
BLAST of jgi.p|Trimin1|149258 vs. uniprot
Match: A0A1Y0RHW2_9CYAN (Uncharacterized protein n=1 Tax=Nostocales cyanobacterium HT-58-2 TaxID=1940762 RepID=A0A1Y0RHW2_9CYAN)

HSP 1 Score: 73.2 bits (178), Expect = 1.720e-13
Identity = 41/94 (43.62%), Postives = 54/94 (57.45%), Query Frame = 1
Query:   82 RREVQQALLAPPPAGRWDEFSGTSDTTRECDVRDDLALALGGSIEIETPAGFADVITATHVIEVKNWRNWKHALGQVLAYHAFASDKRMRIHLF 363
            RR V++ L      G  +    +   T E  V D L   LGG  E+ETP G  D++T T +IEVKN ++WK A+GQVLAY  F  + R R+HLF
Sbjct:   81 RRTVEKDLDRFAEIGLCEFVQRSERNTIEDTVCDRLHSQLGGLREVETPVGRIDLLTDTEIIEVKNIKDWKAAIGQVLAYSGFFPEHRKRLHLF 174          
BLAST of jgi.p|Trimin1|149258 vs. uniprot
Match: UPI000698507B (hypothetical protein n=1 Tax=Azospirillum thiophilum TaxID=528244 RepID=UPI000698507B)

HSP 1 Score: 69.7 bits (169), Expect = 4.170e-12
Identity = 31/71 (43.66%), Postives = 46/71 (64.79%), Query Frame = 1
Query:  151 SDTTRECDVRDDLALALGGSIEIETPAGFADVITATHVIEVKNWRNWKHALGQVLAYHAFASDKRMRIHLF 363
            S   RE   RD  AL +G   E+   +G+ D+++++ ++EVK  R+W+HALGQ LAY  +  D+R RIHLF
Sbjct:  107 SPVQREAYYRDQEALRIGAKREVRCGSGWCDLLSSSEIVEVKEGRHWRHALGQALAYSTYWPDRRRRIHLF 177          
BLAST of jgi.p|Trimin1|149258 vs. uniprot
Match: A0A7V5F0I7_9DELT (KilA-N domain-containing protein n=1 Tax=Desulfobacterales bacterium TaxID=2044940 RepID=A0A7V5F0I7_9DELT)

HSP 1 Score: 68.6 bits (166), Expect = 1.020e-11
Identity = 29/50 (58.00%), Postives = 38/50 (76.00%), Query Frame = 1
Query:  214 EIETPAGFADVITATHVIEVKNWRNWKHALGQVLAYHAFASDKRMRIHLF 363
            E++T AG  D++T TH+IEVKN + WK ALGQVL Y  +  DK++RIHLF
Sbjct:  129 EVQTEAGSVDILTPTHIIEVKNAKEWKAALGQVLVYSGYFEDKKLRIHLF 178          
BLAST of jgi.p|Trimin1|149258 vs. uniprot
Match: UPI0013147F67 (hypothetical protein n=1 Tax=Azospirillum thiophilum TaxID=528244 RepID=UPI0013147F67)

HSP 1 Score: 69.7 bits (169), Expect = 1.580e-11
Identity = 31/71 (43.66%), Postives = 46/71 (64.79%), Query Frame = 1
Query:  151 SDTTRECDVRDDLALALGGSIEIETPAGFADVITATHVIEVKNWRNWKHALGQVLAYHAFASDKRMRIHLF 363
            S   RE   RD  AL +G   E+   +G+ D+++++ ++EVK  R+W+HALGQ LAY  +  D+R RIHLF
Sbjct:  255 SPVQREAYYRDQEALRIGAKREVRCGSGWCDLLSSSEIVEVKEGRHWRHALGQALAYSTYWPDRRRRIHLF 325          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|149258 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z393_9STRA1.820e-86100.00FirrV-1-A34 (Fragment) n=1 Tax=Tribonema minus Tax... [more]
A0A835YUG7_9STRA6.020e-5974.02FirrV-1-A34 (Fragment) n=1 Tax=Tribonema minus Tax... [more]
A0A835YW01_9STRA1.950e-5773.60FirrV-1-A34 (Fragment) n=1 Tax=Tribonema minus Tax... [more]
A0A835YNY8_9STRA6.380e-5367.21FirrV-1-A34 (Fragment) n=1 Tax=Tribonema minus Tax... [more]
D7G319_ECTSI4.620e-2844.26FirrV-1-A34 n=1 Tax=Ectocarpus siliculosus TaxID=2... [more]
A0A6H5L807_9PHAE1.680e-1354.41Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A1Y0RHW2_9CYAN1.720e-1343.62Uncharacterized protein n=1 Tax=Nostocales cyanoba... [more]
UPI000698507B4.170e-1243.66hypothetical protein n=1 Tax=Azospirillum thiophil... [more]
A0A7V5F0I7_9DELT1.020e-1158.00KilA-N domain-containing protein n=1 Tax=Desulfoba... [more]
UPI0013147F671.580e-1143.66hypothetical protein n=1 Tax=Azospirillum thiophil... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_2contigContig_2:137421..137786 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|149258|gw1.2.234.1
Max annot lvl1117|Cyanobacteria
EggNOG OGs2EUDG@1|root,30HRK@2|Bacteria,1GI2U@1117|Cyanobacteria,1H6T7@1142|Synechocystis
Evalue6.73e-13
Seed ortholog1148.1001480
Hectar predicted targeting categoryother localisation
TranscriptId149580
TrackFilteredModels1
ProteinId149258
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|149258gene_540Tribonema minus UTEX_B_3156 geneContig_2 137421..137786 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_540_1exon_540_1Tribonema minus UTEX_B_3156 exonContig_2 137421..137786 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_540CDS_540Tribonema minus UTEX_B_3156 CDSContig_2 137421..137786 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|149258Trimin1|149258|gw1.2.234.1Tribonema minus UTEX_B_3156 polypeptideContig_2 137421..137786 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_540 ID=mRNA_540|Name=jgi.p|Trimin1|149258|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=366bp|location=Sequence derived from alignment at Contig_2:137421..137786+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GTGTGCCGGCTGATGGGCGGTGACATGAGAATCATCGCAGAGGTGGTAGC
ACGCCACAAATGGTGGCAGGAGACAGCCGCGCGGCGTGAGGTTCAACAGG
CACTCCTAGCGCCACCACCTGCTGGCAGATGGGACGAGTTCAGCGGCACG
AGTGACACCACTCGTGAGTGTGATGTGCGCGATGATCTGGCGCTGGCGCT
GGGTGGCAGTATCGAGATAGAGACGCCAGCGGGCTTTGCTGATGTCATCA
CCGCCACTCACGTCATCGAGGTTAAGAATTGGAGGAACTGGAAACACGCA
CTCGGCCAGGTACTGGCGTACCACGCGTTCGCCAGCGACAAGCGCATGCG
AATCCACCTCTTTGCC
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protein sequence of jgi.p|Trimin1|149258

>Trimin1|149258|gw1.2.234.1 ID=Trimin1|149258|gw1.2.234.1|Name=jgi.p|Trimin1|149258|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=122bp
VCRLMGGDMRIIAEVVARHKWWQETAARREVQQALLAPPPAGRWDEFSGT
SDTTRECDVRDDLALALGGSIEIETPAGFADVITATHVIEVKNWRNWKHA
LGQVLAYHAFASDKRMRIHLFA
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mRNA from alignment at Contig_2:137421..137786+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_540 ID=mRNA_540|Name=jgi.p|Trimin1|149258|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=366bp|location=Sequence derived from alignment at Contig_2:137421..137786+ (Tribonema minus UTEX_B_3156 )
GTGTGCCGGCTGATGGGCGGTGACATGAGAATCATCGCAGAGGTGGTAGC ACGCCACAAATGGTGGCAGGAGACAGCCGCGCGGCGTGAGGTTCAACAGG CACTCCTAGCGCCACCACCTGCTGGCAGATGGGACGAGTTCAGCGGCACG AGTGACACCACTCGTGAGTGTGATGTGCGCGATGATCTGGCGCTGGCGCT GGGTGGCAGTATCGAGATAGAGACGCCAGCGGGCTTTGCTGATGTCATCA CCGCCACTCACGTCATCGAGGTTAAGAATTGGAGGAACTGGAAACACGCA CTCGGCCAGGTACTGGCGTACCACGCGTTCGCCAGCGACAAGCGCATGCG AATCCACCTCTTTGCC
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Coding sequence (CDS) from alignment at Contig_2:137421..137786+

>mRNA_540 ID=mRNA_540|Name=jgi.p|Trimin1|149258|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=366bp|location=Sequence derived from alignment at Contig_2:137421..137786+ (Tribonema minus UTEX_B_3156 )
GTGTGCCGGCTGATGGGCGGTGACATGAGAATCATCGCAGAGGTGGTAGC
ACGCCACAAATGGTGGCAGGAGACAGCCGCGCGGCGTGAGGTTCAACAGG
CACTCCTAGCGCCACCACCTGCTGGCAGATGGGACGAGTTCAGCGGCACG
AGTGACACCACTCGTGAGTGTGATGTGCGCGATGATCTGGCGCTGGCGCT
GGGTGGCAGTATCGAGATAGAGACGCCAGCGGGCTTTGCTGATGTCATCA
CCGCCACTCACGTCATCGAGGTTAAGAATTGGAGGAACTGGAAACACGCA
CTCGGCCAGGTACTGGCGTACCACGCGTTCGCCAGCGACAAGCGCATGCG
AATCCACCTCTTTGCC
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