mRNA_540 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|149258 vs. uniprot
Match: A0A835Z393_9STRA (FirrV-1-A34 (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z393_9STRA) HSP 1 Score: 256 bits (653), Expect = 1.820e-86 Identity = 122/122 (100.00%), Postives = 122/122 (100.00%), Query Frame = 1 Query: 1 VCRLMGGDMRIIAEVVARHKWWQETAARREVQQALLAPPPAGRWDEFSGTSDTTRECDVRDDLALALGGSIEIETPAGFADVITATHVIEVKNWRNWKHALGQVLAYHAFASDKRMRIHLFA 366 VCRLMGGDMRIIAEVVARHKWWQETAARREVQQALLAPPPAGRWDEFSGTSDTTRECDVRDDLALALGGSIEIETPAGFADVITATHVIEVKNWRNWKHALGQVLAYHAFASDKRMRIHLFA Sbjct: 1 VCRLMGGDMRIIAEVVARHKWWQETAARREVQQALLAPPPAGRWDEFSGTSDTTRECDVRDDLALALGGSIEIETPAGFADVITATHVIEVKNWRNWKHALGQVLAYHAFASDKRMRIHLFA 122
BLAST of jgi.p|Trimin1|149258 vs. uniprot
Match: A0A835YUG7_9STRA (FirrV-1-A34 (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUG7_9STRA) HSP 1 Score: 186 bits (473), Expect = 6.020e-59 Identity = 94/127 (74.02%), Postives = 102/127 (80.31%), Query Frame = 1 Query: 1 VCRLMGGDMRIIAEVVARHKWWQETAARREVQQALLAPPPAGRWDEFSGTSD-----TTRECDVRDDLALALGGSIEIETPAGFADVITATHVIEVKNWRNWKHALGQVLAYHAFASDKRMRIHLFA 366 VCRLMG DM+IIAEV AR++WWQ T AR EVQQALL PA WDE SGT D + RE DVRDDLALAL GSIE+ETPAGFADV+TAT VI+VK WRNWKH+LGQVLAYHAF SDK RIHLFA Sbjct: 1 VCRLMGRDMKIIAEVEARNEWWQATPARSEVQQALLGALPARSWDEHSGTDDIARERSVREHDVRDDLALALDGSIEMETPAGFADVVTATEVIKVKAWRNWKHSLGQVLAYHAFMSDKSKRIHLFA 127
BLAST of jgi.p|Trimin1|149258 vs. uniprot
Match: A0A835YW01_9STRA (FirrV-1-A34 (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YW01_9STRA) HSP 1 Score: 182 bits (463), Expect = 1.950e-57 Identity = 92/125 (73.60%), Postives = 101/125 (80.80%), Query Frame = 1 Query: 7 RLMGGDMRIIAEVVARHKWWQETAARREVQQALLAPPPAGRWDEFSGTSDTT-----RECDVRDDLALALGGSIEIETPAGFADVITATHVIEVKNWRNWKHALGQVLAYHAFASDKRMRIHLFA 366 RLMGGDMRIIAEV AR++WWQ T ARREVQQ LLA PPA W + +G DT RE DVRDDLALAL GSIE+++PAGFADV+TAT VIEVK+ RNWKHALGQVLAYHAF SDK RIHLFA Sbjct: 1 RLMGGDMRIIAEVAARNEWWQATPARREVQQTLLAAPPAHSWGDHTGMDDTACERSVRERDVRDDLALALDGSIEMKSPAGFADVVTATEVIEVKSCRNWKHALGQVLAYHAFMSDKSKRIHLFA 125
BLAST of jgi.p|Trimin1|149258 vs. uniprot
Match: A0A835YNY8_9STRA (FirrV-1-A34 (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNY8_9STRA) HSP 1 Score: 171 bits (433), Expect = 6.380e-53 Identity = 82/122 (67.21%), Postives = 95/122 (77.87%), Query Frame = 1 Query: 1 VCRLMGGDMRIIAEVVARHKWWQETAARREVQQALLAPPPAGRWDEFSGTSDTTRECDVRDDLALALGGSIEIETPAGFADVITATHVIEVKNWRNWKHALGQVLAYHAFASDKRMRIHLFA 366 VCRLM GDM+IIAEV R+ WWQ T AR EVQ+ LLA P + + + DTTRE DVRD+LALAL G+IE++ AGFADV+TAT VIE+K+WR WKHALGQVLAYHAF SDK RIHLFA Sbjct: 1 VCRLMSGDMKIIAEVAVRNAWWQATPARCEVQRTLLASSPISAHSDDADSDDTTRERDVRDELALALAGNIEVQMSAGFADVVTATEVIEIKHWRTWKHALGQVLAYHAFMSDKSKRIHLFA 122
BLAST of jgi.p|Trimin1|149258 vs. uniprot
Match: D7G319_ECTSI (FirrV-1-A34 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G319_ECTSI) HSP 1 Score: 108 bits (271), Expect = 4.620e-28 Identity = 54/122 (44.26%), Postives = 75/122 (61.48%), Query Frame = 1 Query: 1 VCRLMGGDMRIIAEVVARHKWWQETAARREVQQALLAPPPAGRWDEFSGTSDTTRECDVRDDLALALGGSIEIETPAGFADVITATHVIEVKNWRNWKHALGQVLAYHAFASDKRMRIHLFA 366 +CR+MGGD+ ++ E+ + W+ +QQAL+ P ++ S + +EC VRD LA +GG E+ETPAG DV++ T VIEVK ++ WKH LGQVLAYH F R+HLFA Sbjct: 1 MCRVMGGDLALLKEIEQNNLTWRSVEGGPAIQQALIEPIEYQHVEK----STSVKECWVRDALASLVGGEPEVETPAGNIDVLSGTEVIEVKYYKQWKHGLGQVLAYHCFHPSLAKRLHLFA 118
BLAST of jgi.p|Trimin1|149258 vs. uniprot
Match: A0A6H5L807_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L807_9PHAE) HSP 1 Score: 75.5 bits (184), Expect = 1.680e-13 Identity = 37/68 (54.41%), Postives = 46/68 (67.65%), Query Frame = 1 Query: 163 RECDVRDDLALALGGSIEIETPAGFADVITATHVIEVKNWRNWKHALGQVLAYHAFASDKRMRIHLFA 366 +E VRD LA +GG E ETP GF DV++ T VIEVK ++ W+ ALGQVLAY A+ R+HLFA Sbjct: 205 KESSVRDALASIVGGETEKETPVGFIDVLSDTEVIEVKYYKQWRGALGQVLAYQAYYPGLAKRVHLFA 272
BLAST of jgi.p|Trimin1|149258 vs. uniprot
Match: A0A1Y0RHW2_9CYAN (Uncharacterized protein n=1 Tax=Nostocales cyanobacterium HT-58-2 TaxID=1940762 RepID=A0A1Y0RHW2_9CYAN) HSP 1 Score: 73.2 bits (178), Expect = 1.720e-13 Identity = 41/94 (43.62%), Postives = 54/94 (57.45%), Query Frame = 1 Query: 82 RREVQQALLAPPPAGRWDEFSGTSDTTRECDVRDDLALALGGSIEIETPAGFADVITATHVIEVKNWRNWKHALGQVLAYHAFASDKRMRIHLF 363 RR V++ L G + + T E V D L LGG E+ETP G D++T T +IEVKN ++WK A+GQVLAY F + R R+HLF Sbjct: 81 RRTVEKDLDRFAEIGLCEFVQRSERNTIEDTVCDRLHSQLGGLREVETPVGRIDLLTDTEIIEVKNIKDWKAAIGQVLAYSGFFPEHRKRLHLF 174
BLAST of jgi.p|Trimin1|149258 vs. uniprot
Match: UPI000698507B (hypothetical protein n=1 Tax=Azospirillum thiophilum TaxID=528244 RepID=UPI000698507B) HSP 1 Score: 69.7 bits (169), Expect = 4.170e-12 Identity = 31/71 (43.66%), Postives = 46/71 (64.79%), Query Frame = 1 Query: 151 SDTTRECDVRDDLALALGGSIEIETPAGFADVITATHVIEVKNWRNWKHALGQVLAYHAFASDKRMRIHLF 363 S RE RD AL +G E+ +G+ D+++++ ++EVK R+W+HALGQ LAY + D+R RIHLF Sbjct: 107 SPVQREAYYRDQEALRIGAKREVRCGSGWCDLLSSSEIVEVKEGRHWRHALGQALAYSTYWPDRRRRIHLF 177
BLAST of jgi.p|Trimin1|149258 vs. uniprot
Match: A0A7V5F0I7_9DELT (KilA-N domain-containing protein n=1 Tax=Desulfobacterales bacterium TaxID=2044940 RepID=A0A7V5F0I7_9DELT) HSP 1 Score: 68.6 bits (166), Expect = 1.020e-11 Identity = 29/50 (58.00%), Postives = 38/50 (76.00%), Query Frame = 1 Query: 214 EIETPAGFADVITATHVIEVKNWRNWKHALGQVLAYHAFASDKRMRIHLF 363 E++T AG D++T TH+IEVKN + WK ALGQVL Y + DK++RIHLF Sbjct: 129 EVQTEAGSVDILTPTHIIEVKNAKEWKAALGQVLVYSGYFEDKKLRIHLF 178
BLAST of jgi.p|Trimin1|149258 vs. uniprot
Match: UPI0013147F67 (hypothetical protein n=1 Tax=Azospirillum thiophilum TaxID=528244 RepID=UPI0013147F67) HSP 1 Score: 69.7 bits (169), Expect = 1.580e-11 Identity = 31/71 (43.66%), Postives = 46/71 (64.79%), Query Frame = 1 Query: 151 SDTTRECDVRDDLALALGGSIEIETPAGFADVITATHVIEVKNWRNWKHALGQVLAYHAFASDKRMRIHLF 363 S RE RD AL +G E+ +G+ D+++++ ++EVK R+W+HALGQ LAY + D+R RIHLF Sbjct: 255 SPVQREAYYRDQEALRIGAKREVRCGSGWCDLLSSSEIVEVKEGRHWRHALGQALAYSTYWPDRRRRIHLF 325 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|149258 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_540 ID=mRNA_540|Name=jgi.p|Trimin1|149258|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=366bp|location=Sequence derived from alignment at Contig_2:137421..137786+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. GTGTGCCGGCTGATGGGCGGTGACATGAGAATCATCGCAGAGGTGGTAGCback to top protein sequence of jgi.p|Trimin1|149258 >Trimin1|149258|gw1.2.234.1 ID=Trimin1|149258|gw1.2.234.1|Name=jgi.p|Trimin1|149258|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=122bp VCRLMGGDMRIIAEVVARHKWWQETAARREVQQALLAPPPAGRWDEFSGTback to top mRNA from alignment at Contig_2:137421..137786+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_540 ID=mRNA_540|Name=jgi.p|Trimin1|149258|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=366bp|location=Sequence derived from alignment at Contig_2:137421..137786+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_2:137421..137786+ >mRNA_540 ID=mRNA_540|Name=jgi.p|Trimin1|149258|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=366bp|location=Sequence derived from alignment at Contig_2:137421..137786+ (Tribonema minus UTEX_B_3156 )back to top |