mRNA_5370 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|152907
Unique NamemRNA_5370
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|152907 vs. uniprot
Match: A0A835YW24_9STRA (Homeodomain-like protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YW24_9STRA)

HSP 1 Score: 223 bits (567), Expect = 7.890e-74
Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 1
Query:    1 QGKRSVRKWSPEEDQLMMLLVREHGTRQWGLIGSLLSGRTGKQCRERWHNQLDPMIKKDAWTREEEEVLMQAHSVHGNRWAEIAKLLPGRTDNAIKNHWNSAKRRLS 321
            QGKRSVRKWSPEEDQLMMLLVREHGTRQWGLIGSLLSGRTGKQCRERWHNQLDPMIKKDAWTREEEEVLMQAHSVHGNRWAEIAKLLPGRTDNAIKNHWNSAKRRLS
Sbjct:    1 QGKRSVRKWSPEEDQLMMLLVREHGTRQWGLIGSLLSGRTGKQCRERWHNQLDPMIKKDAWTREEEEVLMQAHSVHGNRWAEIAKLLPGRTDNAIKNHWNSAKRRLS 107          
BLAST of jgi.p|Trimin1|152907 vs. uniprot
Match: A0A835YSF8_9STRA (Homeodomain-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSF8_9STRA)

HSP 1 Score: 210 bits (534), Expect = 1.610e-67
Identity = 101/105 (96.19%), Postives = 102/105 (97.14%), Query Frame = 1
Query:    7 KRSVRKWSPEEDQLMMLLVREHGTRQWGLIGSLLSGRTGKQCRERWHNQLDPMIKKDAWTREEEEVLMQAHSVHGNRWAEIAKLLPGRTDNAIKNHWNSAKRRLS 321
            KR VRKWSPEEDQLM LLV+EHGTRQWGLIGSLLSGRTGKQCRERWHNQLDP IKKDAWTREEEEVLMQAHSVHGNRWAEIAKLLPGRTDNAIKNHWNSAKRRLS
Sbjct:   28 KRVVRKWSPEEDQLMALLVKEHGTRQWGLIGSLLSGRTGKQCRERWHNQLDPHIKKDAWTREEEEVLMQAHSVHGNRWAEIAKLLPGRTDNAIKNHWNSAKRRLS 132          
BLAST of jgi.p|Trimin1|152907 vs. uniprot
Match: A0A7S2CJK5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CJK5_9STRA)

HSP 1 Score: 181 bits (460), Expect = 5.290e-55
Identity = 83/105 (79.05%), Postives = 94/105 (89.52%), Query Frame = 1
Query:    7 KRSVRKWSPEEDQLMMLLVREHGTRQWGLIGSLLSGRTGKQCRERWHNQLDPMIKKDAWTREEEEVLMQAHSVHGNRWAEIAKLLPGRTDNAIKNHWNSAKRRLS 321
            +R VRKW+PEED LMM LV+EHGT+ WG IGS L GRTGKQCRERWHNQLDP I+KD WT  EEE+L++AHS++GNRWAEIAKLLPGRTDNA+KNHWNSAKRRLS
Sbjct:   45 RRVVRKWTPEEDSLMMTLVQEHGTKHWGRIGSSLQGRTGKQCRERWHNQLDPAIRKDPWTGGEEEILLKAHSLYGNRWAEIAKLLPGRTDNAVKNHWNSAKRRLS 149          
BLAST of jgi.p|Trimin1|152907 vs. uniprot
Match: I2CQ47_NANGC (Myb transcription factor (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CQ47_NANGC)

HSP 1 Score: 165 bits (417), Expect = 2.310e-50
Identity = 77/107 (71.96%), Postives = 90/107 (84.11%), Query Frame = 1
Query:    1 QGKRSVRKWSPEEDQLMMLLVREHGTRQWGLIGSLLSGRTGKQCRERWHNQLDPMIKKDAWTREEEEVLMQAHSVHGNRWAEIAKLLPGRTDNAIKNHWNSAKRRLS 321
            QGK+ VRKWS EED  M+ LV+E GT+QWG IG  L GR+GKQCRERWHNQLDP IKK+AW+ EEE VL Q H+ +GNRWAEIA+ LPGRTDNAIKNHWN+A+RR+S
Sbjct:   18 QGKKMVRKWSAEEDAEMVRLVKELGTKQWGQIGIQLGGRSGKQCRERWHNQLDPNIKKEAWSAEEEMVLQQKHAEYGNRWAEIARFLPGRTDNAIKNHWNNARRRMS 124          
BLAST of jgi.p|Trimin1|152907 vs. uniprot
Match: A0A7S0SQE8_9STRA (Hypothetical protein n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0SQE8_9STRA)

HSP 1 Score: 169 bits (428), Expect = 7.800e-50
Identity = 80/104 (76.92%), Postives = 87/104 (83.65%), Query Frame = 1
Query:    7 KRSVRKWSPEEDQLMMLLVREHGTRQWGLIGSLLSGRTGKQCRERWHNQLDPMIKKDAWTREEEEVLMQAHSVHGNRWAEIAKLLPGRTDNAIKNHWNSAKRRL 318
            KR+VRKW+ EED LMM LV EHGTR WGLIG+ L+GRTGKQCRERWHNQLDP I K  WT  EE +L+ AH+  GNRWAEIAK LPGRTDNAIKNHWNSAKRRL
Sbjct:   15 KRTVRKWTQEEDNLMMALVSEHGTRHWGLIGAKLNGRTGKQCRERWHNQLDPAINKTPWTEHEESLLLAAHNDLGNRWAEIAKRLPGRTDNAIKNHWNSAKRRL 118          
BLAST of jgi.p|Trimin1|152907 vs. uniprot
Match: W4HCZ2_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=W4HCZ2_9STRA)

HSP 1 Score: 166 bits (419), Expect = 3.670e-49
Identity = 76/103 (73.79%), Postives = 88/103 (85.44%), Query Frame = 1
Query:    7 KRSVRKWSPEEDQLMMLLVREHGTRQWGLIGSLLSGRTGKQCRERWHNQLDPMIKKDAWTREEEEVLMQAHSVHGNRWAEIAKLLPGRTDNAIKNHWNSAKRR 315
            ++S+ KW+PEED LMM LV+ HGTR+W +IGSLLSGR GKQCRERWHNQLDP I+KD WT +EE +L  AH  +GN+WAEIAKLLPGRTDNAIKNHWNS KRR
Sbjct:   18 RKSISKWTPEEDALMMELVQTHGTRRWSVIGSLLSGRNGKQCRERWHNQLDPSIRKDPWTSDEETLLKVAHHKYGNKWAEIAKLLPGRTDNAIKNHWNSYKRR 120          
BLAST of jgi.p|Trimin1|152907 vs. uniprot
Match: A0A024USW0_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024USW0_9STRA)

HSP 1 Score: 164 bits (415), Expect = 1.360e-48
Identity = 75/103 (72.82%), Postives = 87/103 (84.47%), Query Frame = 1
Query:    7 KRSVRKWSPEEDQLMMLLVREHGTRQWGLIGSLLSGRTGKQCRERWHNQLDPMIKKDAWTREEEEVLMQAHSVHGNRWAEIAKLLPGRTDNAIKNHWNSAKRR 315
            ++S+ KW+PEED LMM LV+ HGTR+W +IGSLL GR GKQCRERWHNQLDP I+KD WT +EE +L  AH  +GN+WAEIAKLLPGRTDNAIKNHWNS KRR
Sbjct:   18 RKSISKWTPEEDSLMMELVQTHGTRRWSVIGSLLPGRNGKQCRERWHNQLDPSIRKDPWTTDEETLLKVAHHKYGNKWAEIAKLLPGRTDNAIKNHWNSYKRR 120          
BLAST of jgi.p|Trimin1|152907 vs. uniprot
Match: A0A6G0XQ76_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XQ76_9STRA)

HSP 1 Score: 163 bits (413), Expect = 1.380e-48
Identity = 75/103 (72.82%), Postives = 88/103 (85.44%), Query Frame = 1
Query:    7 KRSVRKWSPEEDQLMMLLVREHGTRQWGLIGSLLSGRTGKQCRERWHNQLDPMIKKDAWTREEEEVLMQAHSVHGNRWAEIAKLLPGRTDNAIKNHWNSAKRR 315
            ++ V+KW+PEED LM+ LV+ HGTR+W LIGS+L GR GKQCRERWHNQLDP I+KD WT EEE +L  AH+ +GN+WAEIAKLLPGRTDNAIKNHWNS KRR
Sbjct:   13 RKCVQKWTPEEDALMLELVQTHGTRRWSLIGSMLQGRNGKQCRERWHNQLDPNIRKDPWTPEEEMLLKVAHNKYGNKWAEIAKLLPGRTDNAIKNHWNSYKRR 115          
BLAST of jgi.p|Trimin1|152907 vs. uniprot
Match: A0A6H5JK21_9PHAE (MYB protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JK21_9PHAE)

HSP 1 Score: 169 bits (427), Expect = 7.330e-47
Identity = 82/109 (75.23%), Postives = 91/109 (83.49%), Query Frame = 1
Query:    7 KRSVRKWSPEEDQLMMLLVREHGTRQWGLIGSLLSG----RTGKQCRERWHNQLDPMIKKDAWTREEEEVLMQAHSVHGNRWAEIAKLLPGRTDNAIKNHWNSAKRRLS 321
            KR VRKWS +ED  M+ LV E G +QWGLIGS LS     RTGKQCRERWHNQLDP IKKD WT+ EE+ LM+AHS+HGN+WAEIAK+LPGRTDNAIKNHWNSAKRRLS
Sbjct:   20 KRCVRKWSKQEDAEMVKLVLELGVKQWGLIGSRLSSLGGDRTGKQCRERWHNQLDPAIKKDPWTKAEEDTLMRAHSIHGNKWAEIAKILPGRTDNAIKNHWNSAKRRLS 128          
BLAST of jgi.p|Trimin1|152907 vs. uniprot
Match: A0A7R9U0E6_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U0E6_9STRA)

HSP 1 Score: 168 bits (426), Expect = 8.690e-47
Identity = 78/105 (74.29%), Postives = 89/105 (84.76%), Query Frame = 1
Query:    7 KRSVRKWSPEEDQLMMLLVREHGTRQWGLIGSLLSGRTGKQCRERWHNQLDPMIKKDAWTREEEEVLMQAHSVHGNRWAEIAKLLPGRTDNAIKNHWNSAKRRLS 321
            KR VRKW+PEED+LMM LV   GT++WGLIG  L GRTGKQCRERWHNQLDP I+KD W+++EE +L+  H   GNRWAEIAKLLPGRTDNAIKNHWNSAKRRL+
Sbjct:   20 KRQVRKWTPEEDKLMMDLVNTFGTKRWGLIGGRLQGRTGKQCRERWHNQLDPSIRKDPWSKQEEAILIVVHQQVGNRWAEIAKLLPGRTDNAIKNHWNSAKRRLT 124          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|152907 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YW24_9STRA7.890e-74100.00Homeodomain-like protein (Fragment) n=1 Tax=Tribon... [more]
A0A835YSF8_9STRA1.610e-6796.19Homeodomain-like protein n=1 Tax=Tribonema minus T... [more]
A0A7S2CJK5_9STRA5.290e-5579.05Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
I2CQ47_NANGC2.310e-5071.96Myb transcription factor (Fragment) n=1 Tax=Nannoc... [more]
A0A7S0SQE8_9STRA7.800e-5076.92Hypothetical protein n=1 Tax=Chromulina nebulosa T... [more]
W4HCZ2_9STRA3.670e-4973.79Uncharacterized protein n=2 Tax=Aphanomyces astaci... [more]
A0A024USW0_9STRA1.360e-4872.82Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
A0A6G0XQ76_9STRA1.380e-4872.82Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A6H5JK21_9PHAE7.330e-4775.23MYB protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0... [more]
A0A7R9U0E6_9STRA8.690e-4774.29Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_30contigContig_30:456161..456581 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|152907|gw1.30.188.1
BRITEko00000,ko00001,ko03000
KEGG Pathwayko04151,ko05166,map04151,map05166
KEGG koko:K09420
DescriptionRNA polymerase II transcription regulator recruiting activity
COG categoryADK
Max annot lvl2759|Eukaryota
EggNOG OGsCOG5147@1|root,KOG0048@2759|Eukaryota
Evalue6.99e-48
Seed ortholog2880.D8LCT4
Hectar predicted targeting categoryother localisation
TranscriptId153229
TrackFilteredModels1
ProteinId152907
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|152907gene_5370Tribonema minus UTEX_B_3156 geneContig_30 456161..456581 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_5370_1exon_5370_1Tribonema minus UTEX_B_3156 exonContig_30 456161..456300 +
exon_5370_2exon_5370_2Tribonema minus UTEX_B_3156 exonContig_30 456401..456581 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_5370CDS_5370Tribonema minus UTEX_B_3156 CDSContig_30 456161..456300 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|152907Trimin1|152907|gw1.30.188.1Tribonema minus UTEX_B_3156 polypeptideContig_30 456161..456581 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_5370 ID=mRNA_5370|Name=jgi.p|Trimin1|152907|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=321bp|location=Sequence derived from alignment at Contig_30:456161..456581+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CAGGGCAAACGGAGTGTGAGGAAGTGGTCACCCGAGGAGGACCAGCTAAT
GATGCTGCTCGTCAGGGAGCACGGCACCAGGCAGTGGGGGCTTATCGGCT
CGCTGCTCAGCGGCCGCACCGGCAAGCAGTGCAGGGAGAGGTGGCACAAC
CAGCTGGACCCCATGATCAAGAAGGATGCCTGGACGAGGGAGGAGGAGGA
GGTGCTGATGCAGGCACACAGCGTGCACGGGAATCGGTGGGCCGAGATCG
CCAAGCTCCTGCCGGGGCGCACCGACAACGCCATCAAGAACCACTGGAAC
TCCGCCAAGCGCCGCCTGTCG
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protein sequence of jgi.p|Trimin1|152907

>Trimin1|152907|gw1.30.188.1 ID=Trimin1|152907|gw1.30.188.1|Name=jgi.p|Trimin1|152907|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=107bp
QGKRSVRKWSPEEDQLMMLLVREHGTRQWGLIGSLLSGRTGKQCRERWHN
QLDPMIKKDAWTREEEEVLMQAHSVHGNRWAEIAKLLPGRTDNAIKNHWN
SAKRRLS
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mRNA from alignment at Contig_30:456161..456581+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5370 ID=mRNA_5370|Name=jgi.p|Trimin1|152907|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=421bp|location=Sequence derived from alignment at Contig_30:456161..456581+ (Tribonema minus UTEX_B_3156 )
CAGGGCAAACGGAGTGTGAGGAAGTGGTCACCCGAGGAGGACCAGCTAAT GATGCTGCTCGTCAGGGAGCACGGCACCAGGCAGTGGGGGCTTATCGGCT CGCTGCTCAGCGGCCGCACCGGCAAGCAGTGCAGGGAGAGGTGAGATGAA GACCCTTTCTCTCGTGTCCGAATAACACTCGGCAGATCTTTCCGACTACC GCGCCCTGACCCTGCCTCCCCCCCCCTTCCCTCCCCTCAGGTGGCACAAC CAGCTGGACCCCATGATCAAGAAGGATGCCTGGACGAGGGAGGAGGAGGA GGTGCTGATGCAGGCACACAGCGTGCACGGGAATCGGTGGGCCGAGATCG CCAAGCTCCTGCCGGGGCGCACCGACAACGCCATCAAGAACCACTGGAAC TCCGCCAAGCGCCGCCTGTCG
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Coding sequence (CDS) from alignment at Contig_30:456161..456581+

>mRNA_5370 ID=mRNA_5370|Name=jgi.p|Trimin1|152907|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=321bp|location=Sequence derived from alignment at Contig_30:456161..456581+ (Tribonema minus UTEX_B_3156 )
CAGGGCAAACGGAGTGTGAGGAAGTGGTCACCCGAGGAGGACCAGCTAAT
GATGCTGCTCGTCAGGGAGCACGGCACCAGGCAGTGGGGGCTTATCGGCT
CGCTGCTCAGCGGCCGCACCGGCAAGCAGTGCAGGGAGAGGTGGCACAAC
CAGCTGGACCCCATGATCAAGAAGGATGCCTGGACGAGGGAGGAGGAGGA
GGTGCTGATGCAGGCACACAGCGTGCACGGGAATCGGTGGGCCGAGATCG
CCAAGCTCCTGCCGGGGCGCACCGACAACGCCATCAAGAACCACTGGAAC
TCCGCCAAGCGCCGCCTGTCG
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