mRNA_5336 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|164123
Unique NamemRNA_5336
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
[Close]
BLAST of jgi.p|Trimin1|164123 vs. uniprot
Match: A0A835YWC8_9STRA (Small nuclear ribonucleoprotein G n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWC8_9STRA)

HSP 1 Score: 159 bits (402), Expect = 1.510e-49
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 1 
Query:    1 MGRSGPDLKRFMDRKLVLYLNGKRTVRGLLRGYDQFMNLVLEEAVEVVNANFEKPLPGMVVIRGNSVENFEVLWTEQT 234
            MGRSGPDLKRFMDRKLVLYLNGKRTVRGLLRGYDQFMNLVLEEAVEVVNANFEKPLPGMVVIRGNSVENFEVLWTEQT
Sbjct:    1 MGRSGPDLKRFMDRKLVLYLNGKRTVRGLLRGYDQFMNLVLEEAVEVVNANFEKPLPGMVVIRGNSVENFEVLWTEQT 78
[Close]
BLAST of jgi.p|Trimin1|164123 vs. uniprot
Match: A0A835YWI2_9STRA (Small nuclear ribonucleoprotein G n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWI2_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 3.710e-23
Identity = 49/69 (71.01%), Postives = 57/69 (82.61%), Query Frame = 1 
Query:   13 GPDLKRFMDRKLVLYLNGKRTVRGLLRGYDQFMNLVLEEAVEVVNANFEKPLPGMVVIRGNSVENFEVL 219
            GPDLKR+MD++L L LNG R VRG+LRGYDQFMN+VL+EAVEV +   E+ L GMVVIRGNSV  FEVL
Sbjct:    6 GPDLKRYMDKRLHLKLNGNREVRGVLRGYDQFMNIVLDEAVEVPS-KAEERLIGMVVIRGNSVIRFEVL 73
[Close]
BLAST of jgi.p|Trimin1|164123 vs. uniprot
Match: A0A7S4I7A1_9EUKA (Small nuclear ribonucleoprotein G n=1 Tax=Prymnesium polylepis TaxID=72548 RepID=A0A7S4I7A1_9EUKA)

HSP 1 Score: 88.2 bits (217), Expect = 5.530e-21
Identity = 47/76 (61.84%), Postives = 58/76 (76.32%), Query Frame = 1 
Query:   13 GPDLKRFMDRKLVLYLNGKRTVRGLLRGYDQFMNLVLEEAVEVVNANFEKPLPGMVVIRGNSV---ENFEVLWTEQ 231
            GPDLK++MD+KL + LNG R V G+LRG+DQFMNLVL+E VE V+A+ EK   GMVVIRGNS+   E  E LW +Q
Sbjct:   24 GPDLKKYMDKKLAIKLNGNRNVIGILRGFDQFMNLVLDETVEQVSAS-EKNNIGMVVIRGNSIVMMEALEKLWGDQ 98
[Close]
BLAST of jgi.p|Trimin1|164123 vs. uniprot
Match: D8LRR0_ECTSI (Small nuclear ribonucleoprotein G n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRR0_ECTSI)

HSP 1 Score: 85.9 bits (211), Expect = 1.890e-20
Identity = 44/73 (60.27%), Postives = 56/73 (76.71%), Query Frame = 1 
Query:    1 MGRSGPDLKRFMDRKLVLYLNGKRTVRGLLRGYDQFMNLVLEEAVEVVNANFEKPLPGMVVIRGNSVENFEVL 219
            M + GPDLKR+MD+ L L LNG RTV+G+LRGYD FMNLVL+E  +   A+ +K + GMV+IRGNSV  FE+L
Sbjct:    1 MAKGGPDLKRYMDKTLSLKLNGNRTVKGVLRGYDPFMNLVLDETTDP--ASSDKKM-GMVIIRGNSVVQFEIL 70
[Close]
BLAST of jgi.p|Trimin1|164123 vs. uniprot
Match: A0A0M0JX40_9EUKA (Small nuclear ribonucleoprotein G n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JX40_9EUKA)

HSP 1 Score: 85.9 bits (211), Expect = 2.050e-20
Identity = 43/74 (58.11%), Postives = 56/74 (75.68%), Query Frame = 1 
Query:   10 SGPDLKRFMDRKLVLYLNGKRTVRGLLRGYDQFMNLVLEEAVEVVNANFEKPLPGMVVIRGNSV---ENFEVLW 222
            +GPDLK++MD++L + LNG RT+ G LRG+DQFMNLVL+E VE V+A  +  + GMVVIRGNS+   E  E LW
Sbjct:    5 AGPDLKKYMDKRLAIKLNGNRTINGTLRGFDQFMNLVLDETVEQVSATEQNSI-GMVVIRGNSIVMIEALEKLW 77
[Close]
BLAST of jgi.p|Trimin1|164123 vs. uniprot
Match: A0A8J2SPE6_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SPE6_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 3.380e-20
Identity = 45/76 (59.21%), Postives = 60/76 (78.95%), Query Frame = 1 
Query:    1 MGRSGPDLKRFMDRKLVLYLNGKRTVRGLLRGYDQFMNLVLEEAVEVVNANFEKPLPGMVVIRGNSVENFEVLWTE 228
            M   GPDLKR+M++KL++ L GKR + G LRGYDQFMNLV+E+AVE+++   + P+ G VVIRGNSVENFE+  +E
Sbjct:    1 MSAKGPDLKRYMEKKLLIRLVGKRKLTGYLRGYDQFMNLVVEDAVELISLTEKTPI-GTVVIRGNSVENFELQESE 75
[Close]
BLAST of jgi.p|Trimin1|164123 vs. uniprot
Match: A0A024GIK4_9STRA (Small nuclear ribonucleoprotein G n=3 Tax=Oomycota TaxID=4762 RepID=A0A024GIK4_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 5.560e-20
Identity = 42/69 (60.87%), Postives = 52/69 (75.36%), Query Frame = 1 
Query:   13 GPDLKRFMDRKLVLYLNGKRTVRGLLRGYDQFMNLVLEEAVEVVNANFEKPLPGMVVIRGNSVENFEVL 219
            GPDLKR+MD++L L LNG R V G+LRGYDQFMN+ L+EA+E V+      + GMVVIRGNS+  FE L
Sbjct:    6 GPDLKRYMDKRLSLKLNGNRKVSGVLRGYDQFMNVTLDEAIEEVSTTENNKI-GMVVIRGNSIVQFECL 73
[Close]
BLAST of jgi.p|Trimin1|164123 vs. uniprot
Match: H3G549_PHYRM (Small nuclear ribonucleoprotein G n=25 Tax=Oomycota TaxID=4762 RepID=H3G549_PHYRM)

HSP 1 Score: 84.0 bits (206), Expect = 1.120e-19
Identity = 43/70 (61.43%), Postives = 53/70 (75.71%), Query Frame = 1 
Query:   10 SGPDLKRFMDRKLVLYLNGKRTVRGLLRGYDQFMNLVLEEAVEVVNANFEKPLPGMVVIRGNSVENFEVL 219
            +GPDLKR+MD++L L LNG R V G+LRG+DQFMN+ L+E VE V+A  E    GMVVIRGNS+  FE L
Sbjct:    5 AGPDLKRYMDKRLSLKLNGNRKVSGVLRGFDQFMNVTLDETVEEVSAT-ESNRIGMVVIRGNSIVQFECL 73
[Close]
BLAST of jgi.p|Trimin1|164123 vs. uniprot
Match: A0A067C2N0_SAPPC (Small nuclear ribonucleoprotein G n=4 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067C2N0_SAPPC)

HSP 1 Score: 82.8 bits (203), Expect = 3.210e-19
Identity = 41/70 (58.57%), Postives = 52/70 (74.29%), Query Frame = 1 
Query:   10 SGPDLKRFMDRKLVLYLNGKRTVRGLLRGYDQFMNLVLEEAVEVVNANFEKPLPGMVVIRGNSVENFEVL 219
            +GPDLK++MD+ L + LNG R V G+LRG+DQFMN+ LEEA+E V+      L GMVVIRGNS+  FE L
Sbjct:    5 TGPDLKKYMDKTLCIKLNGSRKVSGVLRGFDQFMNITLEEAIEEVSTTEANKL-GMVVIRGNSIVQFECL 73
[Close]
BLAST of jgi.p|Trimin1|164123 vs. uniprot
Match: A0A7S0HIV5_9EUKA (Small nuclear ribonucleoprotein G n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0HIV5_9EUKA)

HSP 1 Score: 83.2 bits (204), Expect = 4.810e-19
Identity = 42/76 (55.26%), Postives = 56/76 (73.68%), Query Frame = 1 
Query:   10 SGPDLKRFMDRKLVLYLNGKRTVRGLLRGYDQFMNLVLEEAVEVVNANFEKPLPGMVVIRGNSV---ENFEVLWTE 228
            +GPDLK++MD+KL + LNG R + G LRG+DQFMNLV++EAVE V+      + GMVV+RGNS+   E  E LW+E
Sbjct:   20 TGPDLKKYMDKKLQIKLNGNRHITGTLRGFDQFMNLVIDEAVEQVSPTENNKI-GMVVVRGNSIVMMEALEKLWSE 94
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|164123 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YWC8_9STRA1.510e-49100.00Small nuclear ribonucleoprotein G n=1 Tax=Tribonem... [more]
A0A835YWI2_9STRA3.710e-2371.01Small nuclear ribonucleoprotein G n=1 Tax=Tribonem... [more]
A0A7S4I7A1_9EUKA5.530e-2161.84Small nuclear ribonucleoprotein G n=1 Tax=Prymnesi... [more]
D8LRR0_ECTSI1.890e-2060.27Small nuclear ribonucleoprotein G n=1 Tax=Ectocarp... [more]
A0A0M0JX40_9EUKA2.050e-2058.11Small nuclear ribonucleoprotein G n=1 Tax=Chrysoch... [more]
A0A8J2SPE6_9STRA3.380e-2059.21Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A024GIK4_9STRA5.560e-2060.87Small nuclear ribonucleoprotein G n=3 Tax=Oomycota... [more]
H3G549_PHYRM1.120e-1961.43Small nuclear ribonucleoprotein G n=25 Tax=Oomycot... [more]
A0A067C2N0_SAPPC3.210e-1958.57Small nuclear ribonucleoprotein G n=4 Tax=Saproleg... [more]
A0A7S0HIV5_9EUKA4.810e-1955.26Small nuclear ribonucleoprotein G n=1 Tax=Phaeocys... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_30contigContig_30:250991..251227 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|164123|e_gw1.30.49.1
BRITEko00000,ko00001,ko00002,ko03032,ko03041
KEGG ModuleM00351,M00352,M00354,M00355,M00398
KEGG Pathwayko03040,map03040
KEGG koko:K11099
GOsGO:0000245,GO:0000375,GO:0000377,GO:0000387,GO:0000398,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005682,GO:0005683,GO:0005684,GO:0005685,GO:0005686,GO:0005687,GO:0005689,GO:0005737,GO:0005829,GO:0006139,GO:0006351,GO:0006353,GO:0006366,GO:0006369,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0006810,GO:0006913,GO:0008150,GO:0008152,GO:0008334,GO:0008380,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016043,GO:0016070,GO:0016071,GO:0018130,GO:0019438,GO:0022607,GO:0022613,GO:0022618,GO:0030532,GO:0031974,GO:0031981,GO:0032774,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0034708,GO:0034709,GO:0034719,GO:0035770,GO:0036464,GO:0043021,GO:0043170,GO:0043186,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0044877,GO:0045495,GO:0046483,GO:0046907,GO:0051169,GO:0051170,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0060293,GO:0065003,GO:0070013,GO:0070990,GO:0071004,GO:0071010,GO:0071011,GO:0071013,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0097159,GO:0097525,GO:0097526,GO:0097659,GO:0120114,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902494,GO:1990234,GO:1990446,GO:1990904
Preferred nameSNRPG
Descriptionspliceosomal snRNP assembly
COG categoryJ
Max annot lvl2759|Eukaryota
EggNOG OGsKOG1780@1|root,KOG1780@2759|Eukaryota
Evalue3.1e-21
Seed ortholog2880.D8LRR0
Hectar predicted targeting categoryother localisation
TranscriptId164445
TrackFilteredModels1
ProteinId164123
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|164123gene_5336Tribonema minus UTEX_B_3156 geneContig_30 250991..251227 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_5336_1exon_5336_1Tribonema minus UTEX_B_3156 exonContig_30 250991..251227 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_5336CDS_5336Tribonema minus UTEX_B_3156 CDSContig_30 250991..251227 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|164123Trimin1|164123|e_gw1.30.49.1Tribonema minus UTEX_B_3156 polypeptideContig_30 250991..251227 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_5336 ID=mRNA_5336|Name=jgi.p|Trimin1|164123|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=237bp|location=Sequence derived from alignment at Contig_30:250991..251227- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGGACGCTCCGGGCCGGATCTCAAGCGATTCATGGACAGGAAGCTGGT
GCTATATCTAAACGGCAAAAGGACAGTGCGGGGGCTGCTGCGTGGGTACG
ACCAGTTCATGAACTTGGTGCTGGAGGAAGCAGTCGAGGTCGTCAACGCC
AACTTTGAAAAGCCTTTGCCAGGTATGGTAGTCATACGGGGGAACAGCGT
AGAGAACTTCGAGGTGCTATGGACAGAACAAACGTGA
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protein sequence of jgi.p|Trimin1|164123

>Trimin1|164123|e_gw1.30.49.1 ID=Trimin1|164123|e_gw1.30.49.1|Name=jgi.p|Trimin1|164123|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=79bp
MGRSGPDLKRFMDRKLVLYLNGKRTVRGLLRGYDQFMNLVLEEAVEVVNA
NFEKPLPGMVVIRGNSVENFEVLWTEQT*
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mRNA from alignment at Contig_30:250991..251227-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5336 ID=mRNA_5336|Name=jgi.p|Trimin1|164123|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=237bp|location=Sequence derived from alignment at Contig_30:250991..251227- (Tribonema minus UTEX_B_3156 )
ATGGGACGCTCCGGGCCGGATCTCAAGCGATTCATGGACAGGAAGCTGGT
GCTATATCTAAACGGCAAAAGGACAGTGCGGGGGCTGCTGCGTGGGTACG
ACCAGTTCATGAACTTGGTGCTGGAGGAAGCAGTCGAGGTCGTCAACGCC
AACTTTGAAAAGCCTTTGCCAGGTATGGTAGTCATACGGGGGAACAGCGT
AGAGAACTTCGAGGTGCTATGGACAGAACAAACGTGA
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Coding sequence (CDS) from alignment at Contig_30:250991..251227-

>mRNA_5336 ID=mRNA_5336|Name=jgi.p|Trimin1|164123|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=237bp|location=Sequence derived from alignment at Contig_30:250991..251227- (Tribonema minus UTEX_B_3156 )
ATGGGACGCTCCGGGCCGGATCTCAAGCGATTCATGGACAGGAAGCTGGT
GCTATATCTAAACGGCAAAAGGACAGTGCGGGGGCTGCTGCGTGGGTACG
ACCAGTTCATGAACTTGGTGCTGGAGGAAGCAGTCGAGGTCGTCAACGCC
AACTTTGAAAAGCCTTTGCCAGGTATGGTAGTCATACGGGGGAACAGCGT
AGAGAACTTCGAGGTGCTATGGACAGAACAAACGTGA
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