mRNA_5320 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|348688
Unique NamemRNA_5320
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|348688 vs. uniprot
Match: A0A835YWB8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWB8_9STRA)

HSP 1 Score: 467 bits (1201), Expect = 1.420e-163
Identity = 298/298 (100.00%), Postives = 298/298 (100.00%), Query Frame = 2 
Query:  113 MATEKIVPSEVDLLLALKIIRAENPDYGTVRLAREIAEQRSEWAVSDARLRKVLKKHDMIITPSTSPQPSKRASRIDGGSIGENPWSAETLTKLLLDKVPEAAAVPENVPEAGPEAVEPSVVESTQEQQEVAPELNSSMTQPAAVDAPTEIEVTAEPAPVEPQSAPEDSVTAAPEPAAVEAVAAERSRSPSVTMKVFSPSRAVPPPPLDVAEADMSKPAAADAADTPRPVTAANTPAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMMLAAVPPARQRRREGAVCEINCTVS 1006
            MATEKIVPSEVDLLLALKIIRAENPDYGTVRLAREIAEQRSEWAVSDARLRKVLKKHDMIITPSTSPQPSKRASRIDGGSIGENPWSAETLTKLLLDKVPEAAAVPENVPEAGPEAVEPSVVESTQEQQEVAPELNSSMTQPAAVDAPTEIEVTAEPAPVEPQSAPEDSVTAAPEPAAVEAVAAERSRSPSVTMKVFSPSRAVPPPPLDVAEADMSKPAAADAADTPRPVTAANTPAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMMLAAVPPARQRRREGAVCEINCTVS
Sbjct:    1 MATEKIVPSEVDLLLALKIIRAENPDYGTVRLAREIAEQRSEWAVSDARLRKVLKKHDMIITPSTSPQPSKRASRIDGGSIGENPWSAETLTKLLLDKVPEAAAVPENVPEAGPEAVEPSVVESTQEQQEVAPELNSSMTQPAAVDAPTEIEVTAEPAPVEPQSAPEDSVTAAPEPAAVEAVAAERSRSPSVTMKVFSPSRAVPPPPLDVAEADMSKPAAADAADTPRPVTAANTPAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMMLAAVPPARQRRREGAVCEINCTVS 298
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|348688 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835YWB8_9STRA1.420e-163100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_30contigContig_30:135598..136952 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|348688|estExt_Genemark1.C_Ctg_300020
Max annot lvl121069|Pythiales
EggNOG OGs2CS1X@1|root,2RA1X@2759|Eukaryota,1MJGH@121069|Pythiales
Evalue4.55e-05
Seed ortholog36331.EPrPI00000021492
Hectar predicted targeting categoryother localisation
TranscriptId349010
TrackFilteredModels1
ProteinId348688
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|348688gene_5320Tribonema minus UTEX_B_3156 geneContig_30 135598..136952 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_5320_1exon_5320_1Tribonema minus UTEX_B_3156 exonContig_30 135598..135832 +
exon_5320_2exon_5320_2Tribonema minus UTEX_B_3156 exonContig_30 136179..136952 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_5320UTR5_5320Tribonema minus UTEX_B_3156 five_prime_UTRContig_30 135598..135709 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_5320CDS_5320Tribonema minus UTEX_B_3156 CDSContig_30 135710..135832 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|348688Trimin1|348688|estExt_Genemark1.C_Ctg_300020Tribonema minus UTEX_B_3156 polypeptideContig_30 135710..136952 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_5320 ID=mRNA_5320|Name=jgi.p|Trimin1|348688|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1009bp|location=Sequence derived from alignment at Contig_30:135598..136952+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GTGGAAACCAGCCAACAGGACGCGGACACAGAACCGGGTAGCGCGTCGAC
AGATCCGAGAGAGCGAGCACGGCGGTGAGAGAGACACAGAACAGCGACCT
CAGCGGCGCAAGATGGCGACAGAAAAGATCGTGCCCTCGGAGGTGGATCT
GCTGCTGGCACTGAAGATTATCCGGGCGGAGAACCCCGATTACGGGACAG
TGAGGCTTGCCCGGGAGATCGCCGAGCAGCGCTCGGAGTGGGCCGTCTCG
GATGCGAGGCTTCGGAAGGTGCTGAAGAAGCACGACATGATCATCACACC
ATCGACGAGCCCTCAGCCATCCAAGCGCGCTTCGAGAATCGATGGCGGCA
GCATCGGCGAAAACCCCTGGAGCGCCGAGACCCTGACCAAGCTGCTGCTC
GACAAGGTGCCCGAAGCGGCGGCAGTGCCCGAAAATGTGCCCGAAGCTGG
GCCAGAAGCAGTCGAGCCGTCTGTCGTGGAGTCAACGCAGGAGCAGCAAG
AGGTCGCACCGGAGCTGAACTCCTCGATGACGCAGCCCGCTGCCGTTGAC
GCGCCCACTGAGATCGAGGTGACCGCGGAACCGGCGCCTGTAGAGCCTCA
GTCCGCGCCCGAGGACTCAGTCACCGCGGCGCCGGAACCTGCTGCTGTCG
AGGCCGTGGCAGCGGAACGCTCACGCTCGCCCAGCGTGACGATGAAGGTC
TTCTCGCCCTCACGCGCGGTGCCGCCGCCGCCGCTGGACGTCGCGGAGGC
GGACATGTCGAAGCCGGCGGCAGCGGACGCCGCCGACACGCCGCGGCCCG
TCACCGCTGCCAACACGCCCGCTGCGGCGACGGCACCGGCGGCAGCGCCT
GAGGAGGACGAAGCCAAGAGCATATTGGAGGGTGCCGATGCGCTTCGGGG
GAAGGGGGGCCTGCCGGGCAAGGGGGGGATGATGCTGGCGGCGGTGCCGC
CGGCGCGGCAGCGGCGGCGCGAGGGCGCTGTGTGCGAGATCAACTGCACC
GTTTCGTGA
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protein sequence of jgi.p|Trimin1|348688

>Trimin1|348688|estExt_Genemark1.C_Ctg_300020 ID=Trimin1|348688|estExt_Genemark1.C_Ctg_300020|Name=jgi.p|Trimin1|348688|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=299bp
MATEKIVPSEVDLLLALKIIRAENPDYGTVRLAREIAEQRSEWAVSDARL
RKVLKKHDMIITPSTSPQPSKRASRIDGGSIGENPWSAETLTKLLLDKVP
EAAAVPENVPEAGPEAVEPSVVESTQEQQEVAPELNSSMTQPAAVDAPTE
IEVTAEPAPVEPQSAPEDSVTAAPEPAAVEAVAAERSRSPSVTMKVFSPS
RAVPPPPLDVAEADMSKPAAADAADTPRPVTAANTPAAATAPAAAPEEDE
AKSILEGADALRGKGGLPGKGGMMLAAVPPARQRRREGAVCEINCTVS*
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mRNA from alignment at Contig_30:135598..136952+

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5320 ID=mRNA_5320|Name=jgi.p|Trimin1|348688|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1355bp|location=Sequence derived from alignment at Contig_30:135598..136952+ (Tribonema minus UTEX_B_3156 )
GTGGAAACCAGCCAACAGGACGCGGACACAGAACCGGGTAGCGCGTCGAC
AGATCCGAGAGAGCGAGCACGGCGGTGAGAGAGACACAGAACAGCGACCT
CAGCGGCGCAAGATGGCGACAGAAAAGATCGTGCCCTCGGAGGTGGATCT
GCTGCTGGCACTGAAGATTATCCGGGCGGAGAACCCCGATTACGGGACAG
TGAGGCTTGCCCGGGAGATCGCCGAGCAGCGCTCGGTGAGTGCAGAATAC
AGCGCGCATGCCGCAGCGCTGCCCCCTGCTGTCTTGCTGCAGTTCTGCCT
TACCTTGCAGTTGCTGCTGTAGAGGCTTGCTGCTTTGTGCATCGCGCTCC
TGCGACGCCCAACGCCTTCTGACAATGTGCTGCCGCTGCGGCTCCACGAC
TCGCGGTACAAATGCGGCCTGGTGCATCGCTGTAAGCTACCCTTTATCTA
TGGCTGAATTCCACAACAAATGCCATGCAGTATAACGCAAAAGTGCTGAC
TCAACTGGACCTGGATCTGCTGCGCGTCATGAGTTCTGCCCCATCGTCAC
CTGCGGCACTGCATCTCTGTCTGTCTTTCAGGAGTGGGCCGTCTCGGATG
CGAGGCTTCGGAAGGTGCTGAAGAAGCACGACATGATCATCACACCATCG
ACGAGCCCTCAGCCATCCAAGCGCGCTTCGAGAATCGATGGCGGCAGCAT
CGGCGAAAACCCCTGGAGCGCCGAGACCCTGACCAAGCTGCTGCTCGACA
AGGTGCCCGAAGCGGCGGCAGTGCCCGAAAATGTGCCCGAAGCTGGGCCA
GAAGCAGTCGAGCCGTCTGTCGTGGAGTCAACGCAGGAGCAGCAAGAGGT
CGCACCGGAGCTGAACTCCTCGATGACGCAGCCCGCTGCCGTTGACGCGC
CCACTGAGATCGAGGTGACCGCGGAACCGGCGCCTGTAGAGCCTCAGTCC
GCGCCCGAGGACTCAGTCACCGCGGCGCCGGAACCTGCTGCTGTCGAGGC
CGTGGCAGCGGAACGCTCACGCTCGCCCAGCGTGACGATGAAGGTCTTCT
CGCCCTCACGCGCGGTGCCGCCGCCGCCGCTGGACGTCGCGGAGGCGGAC
ATGTCGAAGCCGGCGGCAGCGGACGCCGCCGACACGCCGCGGCCCGTCAC
CGCTGCCAACACGCCCGCTGCGGCGACGGCACCGGCGGCAGCGCCTGAGG
AGGACGAAGCCAAGAGCATATTGGAGGGTGCCGATGCGCTTCGGGGGAAG
GGGGGCCTGCCGGGCAAGGGGGGGATGATGCTGGCGGCGGTGCCGCCGGC
GCGGCAGCGGCGGCGCGAGGGCGCTGTGTGCGAGATCAACTGCACCGTTT
CGTGA
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Coding sequence (CDS) from alignment at Contig_30:135598..136952+

>mRNA_5320 ID=mRNA_5320|Name=jgi.p|Trimin1|348688|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=897bp|location=Sequence derived from alignment at Contig_30:135598..136952+ (Tribonema minus UTEX_B_3156 )
ATGGCGACAGAAAAGATCGTGCCCTCGGAGGTGGATCTGCTGCTGGCACT
GAAGATTATCCGGGCGGAGAACCCCGATTACGGGACAGTGAGGCTTGCCC
GGGAGATCGCCGAGCAGCGCTCGGAGTGGGCCGTCTCGGATGCGAGGCTT
CGGAAGGTGCTGAAGAAGCACGACATGATCATCACACCATCGACGAGCCC
TCAGCCATCCAAGCGCGCTTCGAGAATCGATGGCGGCAGCATCGGCGAAA
ACCCCTGGAGCGCCGAGACCCTGACCAAGCTGCTGCTCGACAAGGTGCCC
GAAGCGGCGGCAGTGCCCGAAAATGTGCCCGAAGCTGGGCCAGAAGCAGT
CGAGCCGTCTGTCGTGGAGTCAACGCAGGAGCAGCAAGAGGTCGCACCGG
AGCTGAACTCCTCGATGACGCAGCCCGCTGCCGTTGACGCGCCCACTGAG
ATCGAGGTGACCGCGGAACCGGCGCCTGTAGAGCCTCAGTCCGCGCCCGA
GGACTCAGTCACCGCGGCGCCGGAACCTGCTGCTGTCGAGGCCGTGGCAG
CGGAACGCTCACGCTCGCCCAGCGTGACGATGAAGGTCTTCTCGCCCTCA
CGCGCGGTGCCGCCGCCGCCGCTGGACGTCGCGGAGGCGGACATGTCGAA
GCCGGCGGCAGCGGACGCCGCCGACACGCCGCGGCCCGTCACCGCTGCCA
ACACGCCCGCTGCGGCGACGGCACCGGCGGCAGCGCCTGAGGAGGACGAA
GCCAAGAGCATATTGGAGGGTGCCGATGCGCTTCGGGGGAAGGGGGGCCT
GCCGGGCAAGGGGGGGATGATGCTGGCGGCGGTGCCGCCGGCGCGGCAGC
GGCGGCGCGAGGGCGCTGTGTGCGAGATCAACTGCACCGTTTCGTGA
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