mRNA_5314 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|348683
Unique NamemRNA_5314
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|348683 vs. uniprot
Match: A0A836CDQ2_9STRA (E2F/DP family winged-helix DNA-binding domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDQ2_9STRA)

HSP 1 Score: 542 bits (1397), Expect = 1.110e-190
Identity = 377/377 (100.00%), Postives = 377/377 (100.00%), Query Frame = 3
Query:   48 MRERPLPFDVDSEARMAEQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSKPRRARAAAKRCGKGLRHFSSKVSDQVQSRGTTTYIEVANHLVQEFHAAKASGWLDRTVEEAADAAAIGADVPAPMNSVYEEKNIRRRVYDALNVLLALNIITRERKAIRWVGVPTDFAQTAARLERELXXXXXXXXXXXXXXXXXXXEKRAEVKRKREELSECVSHLIAVRRCRMAMEANSAXXXXXXXXXXXXTAGGYDETQLKLPFITVATHRDTVVKCEMVEGQQEVSFEFSRQFRVDGEVGTLQRLRLHQCPRSQLGQLVPDHLRKWVPPECINDNAPLFAAAQQAQPXXXXXXXXXXXXXXXXGAMPSLERQIQI 1178
            MRERPLPFDVDSEARMAEQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSKPRRARAAAKRCGKGLRHFSSKVSDQVQSRGTTTYIEVANHLVQEFHAAKASGWLDRTVEEAADAAAIGADVPAPMNSVYEEKNIRRRVYDALNVLLALNIITRERKAIRWVGVPTDFAQTAARLERELXXXXXXXXXXXXXXXXXXXEKRAEVKRKREELSECVSHLIAVRRCRMAMEANSAXXXXXXXXXXXXTAGGYDETQLKLPFITVATHRDTVVKCEMVEGQQEVSFEFSRQFRVDGEVGTLQRLRLHQCPRSQLGQLVPDHLRKWVPPECINDNAPLFAAAQQAQPXXXXXXXXXXXXXXXXGAMPSLERQIQI
Sbjct:    1 MRERPLPFDVDSEARMAEQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSKPRRARAAAKRCGKGLRHFSSKVSDQVQSRGTTTYIEVANHLVQEFHAAKASGWLDRTVEEAADAAAIGADVPAPMNSVYEEKNIRRRVYDALNVLLALNIITRERKAIRWVGVPTDFAQTAARLERELXXXXXXXXXXXXXXXXXXXEKRAEVKRKREELSECVSHLIAVRRCRMAMEANSAXXXXXXXXXXXXTAGGYDETQLKLPFITVATHRDTVVKCEMVEGQQEVSFEFSRQFRVDGEVGTLQRLRLHQCPRSQLGQLVPDHLRKWVPPECINDNAPLFAAAQQAQPXXXXXXXXXXXXXXXXGAMPSLERQIQI 377          
BLAST of jgi.p|Trimin1|348683 vs. uniprot
Match: A0A8K1CI48_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CI48_PYTOL)

HSP 1 Score: 155 bits (392), Expect = 1.190e-39
Identity = 96/264 (36.36%), Postives = 142/264 (53.79%), Query Frame = 3
Query:  255 KGLRHFSSKVSDQVQSRGTTTYIEVANHLVQEFHAAKASGWLDRTVEEAADAAAIGADVPAPMNSVYEEKNIRRRVYDALNVLLALNIITRERKAIRWVGVPTDFAQTAARLERELXXXXXXXXXXXXXXXXXXXEKRAEVKRKREELSECVSHLIAVRRCRMAMEANSAXXXXXXXXXXXXTAGGYDETQLKLPFITVATHRDTVVKCEMVEGQQEVSFEFSRQFRVDGEVGTLQRLRLHQCPRSQLGQLVPDHLRKWVPPEC 1046
            KGLRHFS KV ++V+ +  TTY EVA+ LV+EF   +                        P +S Y+EKNIRRRVYDALNVL+A++II++ERK IRW G+PT+    A  L  E                    E+   V++KR+ L + +   +A++     ++ N+                  DE ++ LPFI V T++DTV++CEM E +Q++ F FS  F ++ +   L+RL LH+CP  +L Q+VPD L  ++P EC
Sbjct:  161 KGLRHFSMKVCEKVEEKNVTTYNEVADELVREFVTLR------------------------PNDSGYDEKNIRRRVYDALNVLMAMDIISKERKEIRWKGLPTNLQHDAEMLIAE------------------RNERMKSVEQKRQHLQDLLVQQVAMKNL---LKRNTKRRKENGTDTLR------DEGRIFLPFIVVNTNKDTVIQCEMSEDRQDIFFNFSNPFEINDDTEILRRLDLHKCPYGELKQIVPDKLMSYLPAEC 373          
BLAST of jgi.p|Trimin1|348683 vs. uniprot
Match: K3WUL3_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WUL3_GLOUD)

HSP 1 Score: 155 bits (392), Expect = 2.480e-39
Identity = 95/264 (35.98%), Postives = 143/264 (54.17%), Query Frame = 3
Query:  255 KGLRHFSSKVSDQVQSRGTTTYIEVANHLVQEFHAAKASGWLDRTVEEAADAAAIGADVPAPMNSVYEEKNIRRRVYDALNVLLALNIITRERKAIRWVGVPTDFAQTAARLERELXXXXXXXXXXXXXXXXXXXEKRAEVKRKREELSECVSHLIAVRRCRMAMEANSAXXXXXXXXXXXXTAGGYDETQLKLPFITVATHRDTVVKCEMVEGQQEVSFEFSRQFRVDGEVGTLQRLRLHQCPRSQLGQLVPDHLRKWVPPEC 1046
            KGLRHFS KV  +V+ +  T+Y EVA+ LV+EF   +                        P ++VY+EKNIRRRVYDALNVL+A++II++ERK IRW G+P++       L  E                    E+R  +++K++ L + +   +A++     ++ N+A             +G  DE ++ LPFI V T +DTV++CEM E +Q++ F FS  F ++ +   L+RL LHQC  S+L QLVP+ L   +P EC
Sbjct:  191 KGLRHFSMKVCQKVEEKHVTSYNEVADELVREFVTMR------------------------PNDAVYDEKNIRRRVYDALNVLMAMDIISKERKEIRWKGLPSNLQHDTEMLIAE------------------RNERRKSLEQKKQHLQDLLVQQVAMKNL---LKRNAARRKAETELSVASESGHGDEGRIFLPFIVVNTAKDTVIQCEMSEDRQDIFFNFSAPFEINDDTEILRRLNLHQCAFSELKQLVPEKLLSCLPAEC 409          
BLAST of jgi.p|Trimin1|348683 vs. uniprot
Match: A0A0M0JTX1_9EUKA (Transcription factor dp-1 (Fragment) n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JTX1_9EUKA)

HSP 1 Score: 151 bits (381), Expect = 4.060e-38
Identity = 102/291 (35.05%), Postives = 151/291 (51.89%), Query Frame = 3
Query:  213 SKPRRARAA--AKRCGKGLRHFSSKVSDQVQSRGTTTYIEVANHLVQEFHAAKASGWLDRTVEEAADAAAIGADVPAPMNSVYEEKNIRRRVYDALNVLLALNIITRERKAIRWVGVPTDFAQTAARLERELXXXXXXXXXXXXXXXXXXXEKRAEVKRKREELSECVSHLIAVRRCRMAMEANSAXXXXXXXXXXXXTAGGYDETQLKLPFITVATHRDTVVKCEMVEGQQEVSFEFSRQFRVDGEVGTLQRLRLHQCPRSQLGQLVPDHLRKWVPPECINDNAPLFAAA 1079
            SK +R + A   K+  KGLRHFS KV ++V+ +G TTY EVA+ LV EF                   A + A+  +P++  Y+EKNIRRRVYDALNVL+A+ II +E+K+I W G+P++  Q  ARL+ +L                    +   ++RKR  L + V   I+ ++      AN A                  ++Q+ LPFI V T ++TVV CEM E +QE+ F FS  F +  +  TL+R+ + +C   QL  LVP +L ++     +  + P  AAA
Sbjct:  124 SKKKRVQRAHGGKQGDKGLRHFSMKVCEKVEQKGRTTYNEVADELVMEF-------------------ANMAAEGTSPLDQAYDEKNIRRRVYDALNVLMAMEIIYKEKKSILWRGLPSNTEQEHARLQMDLN------------------SRGERMERKRLHLQDLVQQQISFKQLIARNRANEAAGRPLPPA----------DSQIALPFIVVNTKKETVVDCEMAEDKQEIFFNFSAPFEIHDDSETLKRMHMQRCASDQLTALVPPNLVQFARDSSLVTDPPAAAAA 367          
BLAST of jgi.p|Trimin1|348683 vs. uniprot
Match: A0A3F2S1S5_9STRA (Uncharacterized protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2S1S5_9STRA)

HSP 1 Score: 145 bits (367), Expect = 1.720e-37
Identity = 91/264 (34.47%), Postives = 137/264 (51.89%), Query Frame = 3
Query:  255 KGLRHFSSKVSDQVQSRGTTTYIEVANHLVQEFHAAKASGWLDRTVEEAADAAAIGADVPAPMNSVYEEKNIRRRVYDALNVLLALNIITRERKAIRWVGVPTDFAQTAARLERELXXXXXXXXXXXXXXXXXXXEKRAEVKRKREELSECVSHLIAVRRCRMAMEANSAXXXXXXXXXXXXTAGGYDETQLKLPFITVATHRDTVVKCEMVEGQQEVSFEFSRQFRVDGEVGTLQRLRLHQCPRSQLGQLVPDHLRKWVPPEC 1046
            KGLRHFS KV  +V+ +  T+Y EVA+ LV+EF   +                        P ++VY+EKNIRRRVYDALNVL+A++II++ERK IRW G+P++       L  E                    E+   V++K++ L + +   +A++     +   +A                 DE ++ LPFI V T +DTV++CEM E +Q++ F FS  F +  +   LQRL LH+   ++L Q+VPD L  ++P EC
Sbjct:   19 KGLRHFSMKVCQKVEEKHVTSYNEVADELVREFVTMR------------------------PNDAVYDEKNIRRRVYDALNVLMAMDIISKERKEIRWKGLPSNLQHDTEMLLAE------------------RNERMKSVEQKKQHLQDLLVQQVAMKN----LLKRNAERKRLESENPVSAIAARDEGRVFLPFIAVNTSKDTVIQCEMSEDRQDIFFNFSAPFEIHDDADILQRLNLHKARFAELKQMVPDKLLSYLPAEC 236          
BLAST of jgi.p|Trimin1|348683 vs. uniprot
Match: A0A2D4C957_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C957_PYTIN)

HSP 1 Score: 149 bits (376), Expect = 4.260e-37
Identity = 94/264 (35.61%), Postives = 139/264 (52.65%), Query Frame = 3
Query:  255 KGLRHFSSKVSDQVQSRGTTTYIEVANHLVQEFHAAKASGWLDRTVEEAADAAAIGADVPAPMNSVYEEKNIRRRVYDALNVLLALNIITRERKAIRWVGVPTDFAQTAARLERELXXXXXXXXXXXXXXXXXXXEKRAEVKRKREELSECVSHLIAVRRCRMAMEANSAXXXXXXXXXXXXTAGGYDETQLKLPFITVATHRDTVVKCEMVEGQQEVSFEFSRQFRVDGEVGTLQRLRLHQCPRSQLGQLVPDHLRKWVPPEC 1046
            KGLRHFS +V  +V+ +  TTY EVA+ LV+EF   +                        P ++ Y+EKNIRRRVYDALNVL+AL+II++ERK IRW G+PT+    A  L  E                    E+   V++K++ L + +   +A++     ++ N+                  DE ++ LPFI V T +DTV++CEM E +Q++ F FS  F ++ +   L+RL LH+CPR +L  +VP+ L   VP EC
Sbjct:  191 KGLRHFSLRVCQKVEEKNVTTYNEVADELVREFVTMR------------------------PNDTAYDEKNIRRRVYDALNVLMALDIISKERKEIRWRGLPTNLQHDAEMLIAE------------------RNERVKSVEQKKQHLQDLLVQQVAMKNL---LKRNAKRRKESTLDALR------DEGRIFLPFIVVNTSKDTVIQCEMSEDRQDIFFNFSNPFEINDDTEILRRLDLHKCPREELRHIVPEKLLSHVPTEC 403          
BLAST of jgi.p|Trimin1|348683 vs. uniprot
Match: G4ZDE1_PHYSP (Uncharacterized protein n=3 Tax=Phytophthora TaxID=4783 RepID=G4ZDE1_PHYSP)

HSP 1 Score: 146 bits (368), Expect = 4.230e-36
Identity = 92/264 (34.85%), Postives = 139/264 (52.65%), Query Frame = 3
Query:  255 KGLRHFSSKVSDQVQSRGTTTYIEVANHLVQEFHAAKASGWLDRTVEEAADAAAIGADVPAPMNSVYEEKNIRRRVYDALNVLLALNIITRERKAIRWVGVPTDFAQTAARLERELXXXXXXXXXXXXXXXXXXXEKRAEVKRKREELSECVSHLIAVRRCRMAMEANSAXXXXXXXXXXXXTAGGYDETQLKLPFITVATHRDTVVKCEMVEGQQEVSFEFSRQFRVDGEVGTLQRLRLHQCPRSQLGQLVPDHLRKWVPPEC 1046
            KGLRHFS KV  +V+ +  T+Y EVA+ LV+EF   +                        P ++VY+EKNIRRRVYDALNVL+A++II++ERK IRW G+P++       L  E                    E+   V++K++ L + +   +A++     ++ N+             T    DE ++ LPFI V T +DTV++CEM E +Q++ F FS  F +  +   LQ+L LH+ P + L Q+VPD L  ++P EC
Sbjct:  170 KGLRHFSMKVCQKVEEKHVTSYNEVADELVREFVTMR------------------------PNDAVYDEKNIRRRVYDALNVLMAMDIISKERKEIRWKGLPSNMQHDTEMLLAE------------------RNERMKSVEQKKQHLQDLLVQQVAMKNL---LKRNAERKRKESENPTAATIVR-DEGRVFLPFIAVNTSKDTVIQCEMSEDRQDIFFNFSAPFEIHDDADILQKLNLHKAPYNDLKQMVPDRLLSYLPAEC 387          
BLAST of jgi.p|Trimin1|348683 vs. uniprot
Match: A0A0W8CPQ7_PHYNI (Transcription factor Dp-1 n=2 Tax=Phytophthora TaxID=4783 RepID=A0A0W8CPQ7_PHYNI)

HSP 1 Score: 143 bits (360), Expect = 9.990e-36
Identity = 91/264 (34.47%), Postives = 139/264 (52.65%), Query Frame = 3
Query:  255 KGLRHFSSKVSDQVQSRGTTTYIEVANHLVQEFHAAKASGWLDRTVEEAADAAAIGADVPAPMNSVYEEKNIRRRVYDALNVLLALNIITRERKAIRWVGVPTDFAQTAARLERELXXXXXXXXXXXXXXXXXXXEKRAEVKRKREELSECVSHLIAVRRCRMAMEANSAXXXXXXXXXXXXTAGGYDETQLKLPFITVATHRDTVVKCEMVEGQQEVSFEFSRQFRVDGEVGTLQRLRLHQCPRSQLGQLVPDHLRKWVPPEC 1046
            KGLRHFS KV  +V+ +  T+Y EVA+ LV+EF   +                        P ++VY+EKNIRRRV DALNVL+A++II++ERK IRW G+P++       L  E                    E+   V++K++ L + +   +A++     ++ N+             T    DE ++ LPFI V T +DTV++CEM E +Q++ F FS  F +  +   LQ+L LH+ P ++L Q+VPD L  ++P EC
Sbjct:   87 KGLRHFSMKVCQKVEEKHVTSYNEVADELVREFVTMR------------------------PNDAVYDEKNIRRRVXDALNVLMAMDIISKERKEIRWKGLPSNLQHDTEMLLAE------------------RNERMKSVEQKKQHLQDLLVQQVAMKNL---LKRNADRKRKESENPTSATIVR-DEGRVFLPFIAVNTSKDTVIQCEMSEDRQDIFFNFSAPFEIHDDADILQKLNLHKAPYAELKQMVPDKLLSYLPAEC 304          
BLAST of jgi.p|Trimin1|348683 vs. uniprot
Match: D0P1H1_PHYIT (Transcription factor Dp-1 n=29 Tax=Phytophthora TaxID=4783 RepID=D0P1H1_PHYIT)

HSP 1 Score: 145 bits (365), Expect = 1.180e-35
Identity = 92/264 (34.85%), Postives = 140/264 (53.03%), Query Frame = 3
Query:  255 KGLRHFSSKVSDQVQSRGTTTYIEVANHLVQEFHAAKASGWLDRTVEEAADAAAIGADVPAPMNSVYEEKNIRRRVYDALNVLLALNIITRERKAIRWVGVPTDFAQTAARLERELXXXXXXXXXXXXXXXXXXXEKRAEVKRKREELSECVSHLIAVRRCRMAMEANSAXXXXXXXXXXXXTAGGYDETQLKLPFITVATHRDTVVKCEMVEGQQEVSFEFSRQFRVDGEVGTLQRLRLHQCPRSQLGQLVPDHLRKWVPPEC 1046
            KGLRHFS KV  +V+ +  T+Y EVA+ LV+EF   +                        P ++VY+EKNIRRRVYDALNVL A++II++ERK IRW G+P++    +  L  E                    E+   V++K++ L + +   +A++     ++ N+             T    DE ++ LPFI V T +DTV++CEM E +Q++ F FS  F +  +   LQ+L LH+ P ++L Q+VPD L  ++P EC
Sbjct:  172 KGLRHFSMKVCQKVEEKHVTSYNEVADDLVREFVTMR------------------------PNDAVYDEKNIRRRVYDALNVLRAMDIISKERKEIRWKGLPSNLQHDSEMLLTE------------------RNERMKSVEQKKQHLQDLLVQQVAMKNL---LKRNAERKRKESENPTAATIVR-DEGRVFLPFIAVNTSKDTVIQCEMSEDRQDIFFNFSAPFEIHDDADILQKLNLHRAPYTELKQMVPDKLLSYLPAEC 389          
BLAST of jgi.p|Trimin1|348683 vs. uniprot
Match: H3HCT7_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3HCT7_PHYRM)

HSP 1 Score: 144 bits (364), Expect = 1.430e-35
Identity = 92/264 (34.85%), Postives = 137/264 (51.89%), Query Frame = 3
Query:  255 KGLRHFSSKVSDQVQSRGTTTYIEVANHLVQEFHAAKASGWLDRTVEEAADAAAIGADVPAPMNSVYEEKNIRRRVYDALNVLLALNIITRERKAIRWVGVPTDFAQTAARLERELXXXXXXXXXXXXXXXXXXXEKRAEVKRKREELSECVSHLIAVRRCRMAMEANSAXXXXXXXXXXXXTAGGYDETQLKLPFITVATHRDTVVKCEMVEGQQEVSFEFSRQFRVDGEVGTLQRLRLHQCPRSQLGQLVPDHLRKWVPPEC 1046
            KGLRHFS KV  +V+ +  T+Y EVA+ LV+EF   +                        P +SVY+EKNIRRRVYDALNVL+A++II++ERK IRW G+P++       L  E                    E+   V++K++ L + +   +A++     ++ N+             T    DE ++ LPFI V T +DTV++CEM E + ++ F FS  F +  +   LQ+L LH+ P  +L Q+VPD L   +P EC
Sbjct:  165 KGLRHFSMKVCQKVEEKHVTSYNEVADELVREFVTMR------------------------PNDSVYDEKNIRRRVYDALNVLMAMDIISKERKEIRWKGLPSNLQHDTEMLLAE------------------RNERMRSVEQKKQHLQDLLVQQVAMKNL---LKRNAERKRKESEKPGSATVTR-DEGRVFLPFIAVNTSKDTVIQCEMSEDRHDIFFNFSAPFEIHDDADILQKLNLHKAPYGELKQMVPDKLLSHLPAEC 382          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|348683 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CDQ2_9STRA1.110e-190100.00E2F/DP family winged-helix DNA-binding domain-cont... [more]
A0A8K1CI48_PYTOL1.190e-3936.36Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
K3WUL3_GLOUD2.480e-3935.98Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A0M0JTX1_9EUKA4.060e-3835.05Transcription factor dp-1 (Fragment) n=1 Tax=Chrys... [more]
A0A3F2S1S5_9STRA1.720e-3734.47Uncharacterized protein n=3 Tax=Phytophthora kerno... [more]
A0A2D4C957_PYTIN4.260e-3735.61Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
G4ZDE1_PHYSP4.230e-3634.85Uncharacterized protein n=3 Tax=Phytophthora TaxID... [more]
A0A0W8CPQ7_PHYNI9.990e-3634.47Transcription factor Dp-1 n=2 Tax=Phytophthora Tax... [more]
D0P1H1_PHYIT1.180e-3534.85Transcription factor Dp-1 n=29 Tax=Phytophthora Ta... [more]
H3HCT7_PHYRM1.430e-3534.85Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_30contigContig_30:105754..110358 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|348683|estExt_Genemark1.C_Ctg_300015
DescriptionTranscription factor Dp-1. Source PGD
COG categoryK
Max annot lvl121069|Pythiales
EggNOG OGsKOG2829@1|root,KOG2829@2759|Eukaryota,1MBD2@121069|Pythiales
Evalue1.42e-40
Seed ortholog65071.PYU1_T008660
Hectar predicted targeting categoryother localisation
TranscriptId349005
TrackFilteredModels1
ProteinId348683
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|348683gene_5314Tribonema minus UTEX_B_3156 geneContig_30 105754..110358 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|348683Trimin1|348683|estExt_Genemark1.C_Ctg_300015Tribonema minus UTEX_B_3156 polypeptideContig_30 105848..110072 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_5314_9exon_5314_9Tribonema minus UTEX_B_3156 exonContig_30 105754..106094 -
exon_5314_8exon_5314_8Tribonema minus UTEX_B_3156 exonContig_30 106835..107029 -
exon_5314_7exon_5314_7Tribonema minus UTEX_B_3156 exonContig_30 107716..107798 -
exon_5314_6exon_5314_6Tribonema minus UTEX_B_3156 exonContig_30 108024..108050 -
exon_5314_5exon_5314_5Tribonema minus UTEX_B_3156 exonContig_30 108141..108167 -
exon_5314_4exon_5314_4Tribonema minus UTEX_B_3156 exonContig_30 108237..108449 -
exon_5314_3exon_5314_3Tribonema minus UTEX_B_3156 exonContig_30 109014..109216 -
exon_5314_2exon_5314_2Tribonema minus UTEX_B_3156 exonContig_30 109934..110090 -
exon_5314_1exon_5314_1Tribonema minus UTEX_B_3156 exonContig_30 110330..110358 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_5314UTR3_5314Tribonema minus UTEX_B_3156 three_prime_UTRContig_30 105754..105847 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_5314CDS_5314Tribonema minus UTEX_B_3156 CDSContig_30 109934..110072 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_5314UTR5_5314Tribonema minus UTEX_B_3156 five_prime_UTRContig_30 110330..110358 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_5314 ID=mRNA_5314|Name=jgi.p|Trimin1|348683|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1275bp|location=Sequence derived from alignment at Contig_30:105754..110358- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CATCAGCGAGTGAGGCAGGCGGCTATCAGGACAATTGGCGCCCCGCTATG
CGAGAGCGGCCGCTGCCGTTCGACGTGGACTCGGAAGCCAGAATGGCGGA
GCAGCAAGCAGCAGCGGCAGCAGGAGCGAGGGCTGCTGCAGACGATGGGG
GCATGGATGATCTGGATGACGATGACGATGACGATGGGGATGACAGTGCT
CAGCCTGGCGGCAGCAAGCCGCGGCGCGCACGCGCTGCCGCCAAGCGCTG
CGGCAAGGGGCTGCGACACTTCAGCAGCAAGGTGTCGGACCAAGTGCAGT
CTCGCGGCACGACGACGTACATTGAAGTTGCCAACCACCTCGTGCAAGAG
TTCCACGCGGCTAAGGCAAGTGGCTGGCTGGACCGTACAGTAGAAGAGGC
AGCGGACGCAGCGGCGATAGGCGCGGACGTCCCGGCGCCGATGAACTCCG
TCTACGAGGAGAAGAACATACGGCGGCGCGTGTACGACGCGCTCAACGTG
CTGCTCGCGCTGAACATCATCACGCGCGAGCGCAAGGCCATCCGCTGGGT
CGGCGTGCCGACGGACTTTGCGCAGACGGCGGCGCGGCTGGAGCGCGAGC
TGACGGCGGCGCAGCTGGAGCAAGAGTTGACGGCGGCACGGCTGGAGCGC
GAGCTGGATGAGAAACGCGCGGAGGTCAAGCGCAAGAGGGAGGAGCTATC
GGAGTGCGTGTCACACCTGATTGCGGTGCGGCGCTGCAGGATGGCGATGG
AGGCAAATAGCGCTGCAGCCGCGGCGGGGGCGGACGGCGGCGGCGGCGGC
ACGGCAGGCGGCTATGACGAGACGCAGTTGAAGTTGCCCTTTATTACCGT
GGCGACGCACCGCGATACGGTGGTGAAGTGCGAGATGGTGGAGGGGCAGC
AGGAGGTCTCGTTTGAGTTCAGCCGGCAGTTCAGGGTCGACGGCGAAGTC
GGCACCCTGCAGCGGCTGCGCCTGCACCAGTGCCCGCGCTCACAGCTGGG
GCAGCTCGTACCCGACCACCTGCGCAAGTGGGTCCCGCCAGAGTGCATCA
ACGACAACGCTCCGCTCTTTGCCGCGGCGCAGCAAGCGCAGCCTGCGGCA
GCAGCACCGGCGCCGCCACTGGCGGCAGCGGCGGCGGCGGCGGGCGCGAT
GCCGTCTCTGGAGCGCCAGATACAGATATGAAGTGTAGATACAGATGTGA
AGTGTAAGGGCGGTGAGTGGGTGCAGCAGTTGTGTGAGGTCTAGCGGAGC
CAGCAGTACCGACTGTTGAAGTTTA
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protein sequence of jgi.p|Trimin1|348683

>Trimin1|348683|estExt_Genemark1.C_Ctg_300015 ID=Trimin1|348683|estExt_Genemark1.C_Ctg_300015|Name=jgi.p|Trimin1|348683|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=378bp
MRERPLPFDVDSEARMAEQQAAAAAGARAAADDGGMDDLDDDDDDDGDDS
AQPGGSKPRRARAAAKRCGKGLRHFSSKVSDQVQSRGTTTYIEVANHLVQ
EFHAAKASGWLDRTVEEAADAAAIGADVPAPMNSVYEEKNIRRRVYDALN
VLLALNIITRERKAIRWVGVPTDFAQTAARLERELTAAQLEQELTAARLE
RELDEKRAEVKRKREELSECVSHLIAVRRCRMAMEANSAAAAAGADGGGG
GTAGGYDETQLKLPFITVATHRDTVVKCEMVEGQQEVSFEFSRQFRVDGE
VGTLQRLRLHQCPRSQLGQLVPDHLRKWVPPECINDNAPLFAAAQQAQPA
AAAPAPPLAAAAAAAGAMPSLERQIQI*
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mRNA from alignment at Contig_30:105754..110358-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5314 ID=mRNA_5314|Name=jgi.p|Trimin1|348683|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=4605bp|location=Sequence derived from alignment at Contig_30:105754..110358- (Tribonema minus UTEX_B_3156 )
CATCAGCGAGTGAGGCAGGCGGCTATCAGGCAAGCTACATGGAGTCGTTA TTTCGTCCCATACATCGGCACTCCACTAATATAGTCCGACGACTGCGACT CCAAGCCTTTGCCAACACTTTTGCAAAAATTATATATTCAGCCTCCCAGC AACGAGACTTGCTTGTGGCCGCTTCCACGCAAAAACAATGCATGATACCA ACTGCATCGGCGGCGTGCACATTCTCGAACCCTGAGCTCCGACACTTGCC GCCTACTGTCAAGAACAGGACAATTGGCGCCCCGCTATGCGAGAGCGGCC GCTGCCGTTCGACGTGGACTCGGAAGCCAGAATGGCGGAGCAGCAAGCAG CAGCGGCAGCAGGAGCGAGGGCTGCTGCAGACGATGGGGGCATGGATGAT CTGGATGACGATGACGATGACGATGGTGAGCGCGCATTCTTGAAGTTCAG CATCGGCTCTGTTGGCATGCTCATTGTCAGGGAGCAATGTGCTGAATGGA CGACGGTGCCACGATGTCATCGCGGCAGGCGCTATTAGCAATGTCAAGGG GCGTTCTATGCAAGCGTGTGTTGTGATGGCAGCAAGCTCAGGCCGCAGGC GGCACATATGCTGAGCTGTGATGACCATCACTGTTGAGCATCACCGTGCT ACTGAGGGGGGGTGTGACAGTTATCATACTGGCGGCTGTTAATACTGAGC AACAATGCCCATCATTGATTAGGATCGCCACACCACAATCATCATCACTT TTAGGGGGATGACAGCAATGCTCAGGATGGCACAGCACTGAGCGTTGATG ACCATCACTGACGAGTAGCACCGCGCTGCCATGCAGGGGACGACAGCGCT CAGGCTGGCGCAGTAACACGCACTCACTGAGCAATGTTGAGGTTTTTTTC TGATGAGCATCACCACACCACCATGCACTCAGGCCCAGCCTCTTCCCTGC GGAAATGGCTGAGTCACTCCATCTCTTGTGCTGCTATGCAGGGGATGACA GCGCTCAGGCTGGCCACACCAAGCACTTAGCGTTGATTGCCATATCTGAT GAGCATCACCACGTGCTGCTGAGCAGGACAAATGCTGAGCGTTGATGAGC ATCCCTGATGAACATCACCCCACGCTGCACGCTGCTGTGTAGGGGATGAC AGTGCTCAGCCTGGCGGCAGCAAGCCGCGGCGCGCACGCGCTGCCGCCAA GCGCTGCGGCAAGGGGCTGCGACACTTCAGCAGCAAGGTGTCGGACCAAG TGCAGTCTCGCGGCACGACGACGTACATTGAAGTTGCCAACCACCTCGTG CAAGAGTTCCACGCGGCTAAGGCAAGTGGCTGGCTGGACCGTACAGTAAC AGTACAGAGTGGAGCACGCATGTATCCATGTGTACTGATGAAATTCGGGT TGTCGTTGTTATAGAGAAGGCGATGAAATGGAGAAGCTGCGTGGGGGTTA GGTAGTGGGGCGTCACTTGCAGTACACTGCGCTCCCGTTAAGCAATGATG CATGTATGTGCCAGTCAATCATGCGGCAGTGCAATGCGAAGGCAAGCGGT CGTAAGGAGCGCCGTTTCGCTGCAAGGGGTGACGCTCCAGCAGGTGCCCG CGCCCCTTGCCATTACTCCCGCACGGCGCCATCGCTGCTGCAATGCTGCG CACTGCCGCTGTTGGCACACACAAAGCAGCAGCACCGCTCAACCCGAATG CAGCAGCGATTAGCACGCACTCGACGCTGCGCCCATCGTCTGGCGCTCTG CGTGCGTCGTGTGTGAACCCCCTGCTCCACGCCTCTGCGGGCCTTGAAGT CAGGGTCAGCGAACCGCTCACCCGCGCTGCTGCAACACAGAGCACTGCTG TGGAGCCGCGCACAGACCAAGCATCTCACGCCGCCGCCGCCGCCGCTCGC ACGCCGCAGGTAGAAGAGGCAGCGGACGCAGCGGCGATAGGCGCGGACGT CCCGGCGCCGATGAACTCCGTCTACGAGGAGAAGAACATACGGCGGCGCG TGTACGACGCGCTCAACGTGCTGCTCGCGCTGAACATCATCACGCGCGAG CGCAAGGCCATCCGCTGGGTCGGCGTGCCGACGGACTTTGCGCAGACGGC GGCGCGGCTGGAGCGCGAGCTGGTGCGTCTTGAAGTTCACAACACTTGAA GTAAGATGGATGTTTGCAGCGTGCTGACGGGCTTTCTGCAGACGGCGGCG CAGCTGGAGCAAGAGTTGGTGCGTCGCCGGTTTGCGCTTGGTGACTTGAA GTTTTCCTGCACTTGAAGTTGGATTGAAGTCTGCAGCGTGATCACGGACA TTGCGCAGACGGCGGCACGGCTGGAGCGCGAGCTGGTGCGTCGCCGGTTC ACGCTTGTGACTTGAAGTTTGCAGCAGAGCCTGCGGACGTGTAGCGCAGA CGGCGACGCGGTTGGAAAGCTCTCGGCAGAGCCAACGCCCGAAACGGCCT CTGACCTGAGTCGACAACACTTGCACGTGGCTGCTCTCTGGCTGCTGTCA CCCTGCTGCGCCACTCAATTAATGTGCAATTGTGCTGTTGCGGGTGCGAC GGCACAACAGGATGAGAAACGCGCGGAGGTCAAGCGCAAGAGGGAGGAGC TATCGGAGTGCGTGTCACACCTGATTGCGGTGCGGCGCTGCAGGTGAGCA GCACACTTCAACTAGCTTTTGGGTTTTGGTTGAAGTTAGGGTTCAGATTA GGGCACTAGGCGTAGGGTCAGGGTTAGAAGCAGGCGGCAGCGCTCAACAC GCTGTGGAGCGTTACAGTGATGAAGTTCAACGCACAGCACACACAACACT CTCAGTGCCCGGAGATTGGCATGAAGCTCGAAACCACTTAAAATTGGCCT TCTCATAAGGTTGTGACCAGGCCTAAGCTATGGCAGTATATCCAAGATGC TTCCACAAGAATTGGCAACATCAACTCGATGAACTACCACTCTCAGATTT CTTGCTTCAGCCCTCAGAAACGCATGATAGTCATTCAGCTCCTGTCAAGG TGTCAAGGTGATGCCACATCATGCGTGGCTGCCCTCATACCAAACATGTT CGTTCCAACAACATCAGTATTTATCTGCTTTATGACGAGCCAAATCTCAC AGCAACATCATTGCAGTGCGAACGCCGGTGTTCAGATACACATACATGAC GACGGGAGGGATCATTTGCACTGCGCGGACCAGTGTGCGCTCTGTGTTCC TGCCAGTTCGGCACATAAGTACGTATCCACATCACTTCTGTAGTGGCACA GTGCAGCCATGGCACGGCTGTAGGCACAAGAGCACCGAGTGTGACTCATT TGTAACTGCCATTTGTAACTGACATTCAGGATGGCGATGGAGGCAAATAG CGCTGCAGCCGCGGCGGGGGCGGACGGCGGCGGCGGCGGCACGGCAGGCG GCTATGACGAGACGCAGTTGAAGTTGCCCTTTATTACCGTGGCGACGCAC CGCGATACGGTGGTGAAGTGCGAGATGGTGGAGGGGCAGCAGGAGGTCTC GTTTGAGTTCAGCCGGCAGTTCAGGTGAGTTTTGCAACAGCGCGGCAGTC CACACAGGCAATGCGCTTGGTGCCCCTGGCTGTTTGAGGTTCGGCGTTTT CGCTGAATTTTTGTTCACAACGCTCGATACCTTGCCAGGCGTGATGTGCT TCGCTTGCTCTCCCTATGTGGTCATGATCACCGTCATTGGCAGCAGAAAC ACTGCTCAGCTGGTCAGCCTCAGATGCTTTGAGCTGACCAAGCCATCCGC CCTCAAAGTGCTTGTGCAGCTGAAGGAATGCACCACGCAGTTTGCATGGT TTTCACATCAACAACGCGCACTGAAACTGGACGTCTGCTGCCGACCTCAG CTGAACATTTCAGCTTAAACCTCTATCAAGTGCTTCTGCTCGGTTGTAGG CAGCACCGCCGCATACGGAAACCAGCAAAGCCTTACGGTGTGCCTTGCCT GCCTGATCTAGAGTCAGCAGTGGAGAATAAGGGAGGTCTACGTCTACTGT AGTCTGTTAGGGCCGGTTTTAGCGCGCGGTAGTCTATGAGTGCTGCCCAA TGGATGATACCGCCCACCCATCGCCATCATCTGCGAACTGCTGCTGCTGC TGCTGCTGCTGCTGCTGCTCAGTGAAGAGTTGTAAGTGTTGTGTTCTCAT TCATAAACATCTCGTGGCCTAGTGCCTCCACTCTCAGGCAACCAACAACG CCCTTATTCCACTGCCGCCGCCGCTGCCGCTGCTGCTGCCGCTGCTGCTG CCGCGACCGCGCAGGGTCGACGGCGAAGTCGGCACCCTGCAGCGGCTGCG CCTGCACCAGTGCCCGCGCTCACAGCTGGGGCAGCTCGTACCCGACCACC TGCGCAAGTGGGTCCCGCCAGAGTGCATCAACGACAACGCTCCGCTCTTT GCCGCGGCGCAGCAAGCGCAGCCTGCGGCAGCAGCACCGGCGCCGCCACT GGCGGCAGCGGCGGCGGCGGCGGGCGCGATGCCGTCTCTGGAGCGCCAGA TACAGATATGAAGTGTAGATACAGATGTGAAGTGTAAGGGCGGTGAGTGG GTGCAGCAGTTGTGTGAGGTCTAGCGGAGCCAGCAGTACCGACTGTTGAA GTTTA
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Coding sequence (CDS) from alignment at Contig_30:105754..110358-

>mRNA_5314 ID=mRNA_5314|Name=jgi.p|Trimin1|348683|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1134bp|location=Sequence derived from alignment at Contig_30:105754..110358- (Tribonema minus UTEX_B_3156 )
ATGCGAGAGCGGCCGCTGCCGTTCGACGTGGACTCGGAAGCCAGAATGGC
GGAGCAGCAAGCAGCAGCGGCAGCAGGAGCGAGGGCTGCTGCAGACGATG
GGGGCATGGATGATCTGGATGACGATGACGATGACGATGGGGATGACAGT
GCTCAGCCTGGCGGCAGCAAGCCGCGGCGCGCACGCGCTGCCGCCAAGCG
CTGCGGCAAGGGGCTGCGACACTTCAGCAGCAAGGTGTCGGACCAAGTGC
AGTCTCGCGGCACGACGACGTACATTGAAGTTGCCAACCACCTCGTGCAA
GAGTTCCACGCGGCTAAGGCAAGTGGCTGGCTGGACCGTACAGTAGAAGA
GGCAGCGGACGCAGCGGCGATAGGCGCGGACGTCCCGGCGCCGATGAACT
CCGTCTACGAGGAGAAGAACATACGGCGGCGCGTGTACGACGCGCTCAAC
GTGCTGCTCGCGCTGAACATCATCACGCGCGAGCGCAAGGCCATCCGCTG
GGTCGGCGTGCCGACGGACTTTGCGCAGACGGCGGCGCGGCTGGAGCGCG
AGCTGACGGCGGCGCAGCTGGAGCAAGAGTTGACGGCGGCACGGCTGGAG
CGCGAGCTGGATGAGAAACGCGCGGAGGTCAAGCGCAAGAGGGAGGAGCT
ATCGGAGTGCGTGTCACACCTGATTGCGGTGCGGCGCTGCAGGATGGCGA
TGGAGGCAAATAGCGCTGCAGCCGCGGCGGGGGCGGACGGCGGCGGCGGC
GGCACGGCAGGCGGCTATGACGAGACGCAGTTGAAGTTGCCCTTTATTAC
CGTGGCGACGCACCGCGATACGGTGGTGAAGTGCGAGATGGTGGAGGGGC
AGCAGGAGGTCTCGTTTGAGTTCAGCCGGCAGTTCAGGGTCGACGGCGAA
GTCGGCACCCTGCAGCGGCTGCGCCTGCACCAGTGCCCGCGCTCACAGCT
GGGGCAGCTCGTACCCGACCACCTGCGCAAGTGGGTCCCGCCAGAGTGCA
TCAACGACAACGCTCCGCTCTTTGCCGCGGCGCAGCAAGCGCAGCCTGCG
GCAGCAGCACCGGCGCCGCCACTGGCGGCAGCGGCGGCGGCGGCGGGCGC
GATGCCGTCTCTGGAGCGCCAGATACAGATATGA
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