mRNA_5311 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|55500
Unique NamemRNA_5311
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|55500 vs. uniprot
Match: A0A836CEX8_9STRA (Catalytic LigB subunit of aromatic ring-opening dioxygenase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEX8_9STRA)

HSP 1 Score: 576 bits (1485), Expect = 4.460e-205
Identity = 290/290 (100.00%), Postives = 290/290 (100.00%), Query Frame = 2
Query:  125 MSLAKSTCRALPRSVFISHGGGPCFFYEAAGPFSAIDKNSRVAADFRKLSTVLPKPKVIVICTAHWEADGPKIRVTGQPAPSLVYDYYGFPAETYKLTYPAPGDPQLAADIVALLKGAGISAELELERGFDHGVFIPLKMIYPDADVPVVAISLSSTLDPAFHISVGKALSGLAGRGVLVFGSGMATHNLGMVRSAAAHGEGVPVEPRAGAFIDWLKATLGDGVSAQERERRLLRWTEEAPHARHSHPREEHLLPLHVAAGAAGFAAGELVLDATVFGGMSMASFAFGQQ 994
            MSLAKSTCRALPRSVFISHGGGPCFFYEAAGPFSAIDKNSRVAADFRKLSTVLPKPKVIVICTAHWEADGPKIRVTGQPAPSLVYDYYGFPAETYKLTYPAPGDPQLAADIVALLKGAGISAELELERGFDHGVFIPLKMIYPDADVPVVAISLSSTLDPAFHISVGKALSGLAGRGVLVFGSGMATHNLGMVRSAAAHGEGVPVEPRAGAFIDWLKATLGDGVSAQERERRLLRWTEEAPHARHSHPREEHLLPLHVAAGAAGFAAGELVLDATVFGGMSMASFAFGQQ
Sbjct:    1 MSLAKSTCRALPRSVFISHGGGPCFFYEAAGPFSAIDKNSRVAADFRKLSTVLPKPKVIVICTAHWEADGPKIRVTGQPAPSLVYDYYGFPAETYKLTYPAPGDPQLAADIVALLKGAGISAELELERGFDHGVFIPLKMIYPDADVPVVAISLSSTLDPAFHISVGKALSGLAGRGVLVFGSGMATHNLGMVRSAAAHGEGVPVEPRAGAFIDWLKATLGDGVSAQERERRLLRWTEEAPHARHSHPREEHLLPLHVAAGAAGFAAGELVLDATVFGGMSMASFAFGQQ 290          
BLAST of jgi.p|Trimin1|55500 vs. uniprot
Match: A0A2E2J864_9GAMM (Dioxygenase n=1 Tax=Polycyclovorans sp. TaxID=2024852 RepID=A0A2E2J864_9GAMM)

HSP 1 Score: 236 bits (602), Expect = 1.100e-71
Identity = 132/276 (47.83%), Postives = 175/276 (63.41%), Query Frame = 2
Query:  167 VFISHGGGPCFFYEAAGPFSAIDKNSRVAADFRKLSTVLPKP-KVIVICTAHWEADGPKIRVTGQPAPSLVYDYYGFPAETYKLTYPAPGDPQLAADIVALLKGAGISAELELERGFDHGVFIPLKMIYPDADVPVVAISLSSTLDPAFHISVGKALSGLAGRGVLVFGSGMATHNLGMVRSAAAHGEGVPVEPRAGAFIDWLKATLGDGVSAQERERRLLRWTEEAPHARHSHPREEHLLPLHVAAGAAGFAAGELVLDATVFGGMSMASFAFGQ 991
            VF+ HGGGPCFF     P    D  +R+    R L   LP+P + +++ +AHWEA   ++ V   P P L+YDY GFP  TY LT+PAPG P LAA + + L+ AGI    +  RGFDHGVFIPLK+ +P AD+P V +SL + LDPA H+++G AL  L   GVL+ GSGM+ HN+  + +      G  V+  + AF  WL++ +     A +R +RLLRW++ APHAR +HPREEHLLPLHVA GAAG AAG +  +ATV G    + F FGQ
Sbjct:    8 VFLPHGGGPCFFMTWNPP----DTWTRMGDWLRTLPGQLPEPPRALLVISAHWEAA--EVTVQTHPNPPLIYDYNGFPPHTYALTWPAPGAPALAAKVQSRLQAAGIPCRADARRGFDHGVFIPLKLAFPAADIPTVQLSLKAGLDPATHLAMGAALQDLRDDGVLIMGSGMSDHNMARLMAG-----GTEVDAPSAAFGRWLQSAVT--APAADRWQRLLRWSD-APHARDAHPREEHLLPLHVAVGAAGTAAGRIAFEATVLGSRQ-SGFIFGQ 268          
BLAST of jgi.p|Trimin1|55500 vs. uniprot
Match: A0A1Y5G304_9GAMM (Dioxygenase n=1 Tax=Gammaproteobacteria bacterium 50_400_T64 TaxID=1856294 RepID=A0A1Y5G304_9GAMM)

HSP 1 Score: 232 bits (592), Expect = 4.880e-70
Identity = 133/278 (47.84%), Postives = 179/278 (64.39%), Query Frame = 2
Query:  167 VFISHGGGPCFFYE-AAGPFSAIDKNSRVAADFRKL-STVLPKPKVIVICTAHWEADGPKIRVTGQPAPSLVYDYYGFPAETYKLTYPAPGDPQLAADIVALLKGAGISAELELERGFDHGVFIPLKMIYPDADVPVVAISLSSTLDPAFHISVGKALSGLAGRGVLVFGSGMATHNLGMVRSAAAHGEGVPVEPRAGAFIDWLKATLGDGVSAQERERRLLRWTEEAPHARHSHPREEHLLPLHVAAGAAGFAAGELVLDATVFGGMSMASFAFGQQ 994
            ++I HGGGPCFF +   GP +  DK   +A+  R+L +++  +P+ IV+C+AHWE  G +I +   P P LV+DYY FP  TY+L YPAPG P+LA DI  LLKGA ISA L+ + GFDHGVFIP K+IYPDA +P+V ISL S L+PA HI+VG+ALS L  +G L+ GSGM+ HN+  + +          +  A  F DWL++   +  +A ERE+ L  W + AP AR +HPREEHLLPL V AGAAG   G  +    V G   +++  FG+ 
Sbjct:   13 LYIPHGGGPCFFMDWTMGPANTWDK---MASWLRELGNSIGARPRQIVVCSAHWE--GEQILINANPKPELVFDYYNFPPHTYELEYPAPGSPKLAKDIHHLLKGADISAALDADHGFDHGVFIPFKLIYPDAHIPIVQISLRSDLNPAHHIAVGRALSPLRQQGTLIVGSGMSYHNMQALMTPGND------KLDARQFDDWLRSACEN--TASEREQLLCDW-QSAPAARQAHPREEHLLPLMVVAGAAGDDVGVAIFQDQVLGAQ-VSAIQFGKS 275          
BLAST of jgi.p|Trimin1|55500 vs. uniprot
Match: A0A2N3BD35_9PROT (Dioxygenase (Fragment) n=1 Tax=Alphaproteobacteria bacterium HGW-Alphaproteobacteria-5 TaxID=2013668 RepID=A0A2N3BD35_9PROT)

HSP 1 Score: 231 bits (589), Expect = 1.000e-69
Identity = 131/271 (48.34%), Postives = 165/271 (60.89%), Query Frame = 2
Query:  164 SVFISHGGGPCFFYEAAGPFSAIDKNSRVAADFRKLSTVLP-KPKVIVICTAHWEADGPKIRVTGQPAPSLVYDYYGFPAETYKLTYPAPGDPQLAADIVALLKGAGISAELELERGFDHGVFIPLKMIYPDADVPVVAISLSSTLDPAFHISVGKALSGLAGRGVLVFGSGMATHNLGMVRSAAAHGEGVPVEPRAGAFIDWLKATLGDGVSAQERERRLLRWTEEAPHARHSHPREEHLLPLHVAAGAAGFAAGELVLDATVFGGMSMA 973
            S+FI HGGGPCFF +   P    D   R  A    L  +LP +PK +++ + HWE   P   V   PAP L++DYYGFP  TY+LT+PAPGDP LA  + +LL+ AG     + ERGFDHGVF+PLK+ +P AD+P V +SL   +DPA H++ G+AL+ L   GVL+ GSG   HNL   R   A G  VP EP   AF  WL+  + +    + R  RL RW E AP AR SHPREEHL+PLHVAAGAAG   G  V +  V G +  A
Sbjct:    7 SLFIPHGGGPCFFMDWDPP----DTWDRHRAFLEGLPAMLPERPKALLVISGHWEE--PVFTVQTNPAPPLLFDYYGFPPHTYQLTWPAPGDPALAGRVRSLLEDAGFETGEDAERGFDHGVFVPLKVAFPAADIPTVQLSLRGDVDPAAHLAAGRALAPLRDEGVLIVGSGNTYHNLR--RMLGAMGGRVPAEPAGRAFDRWLEEAVTE-PDPERRAARLTRWAE-APGARESHPREEHLIPLHVAAGAAGADPGRKVFEDVVMGAIESA 267          
BLAST of jgi.p|Trimin1|55500 vs. uniprot
Match: I7ZAX2_9GAMM (Catalytic LigB subunit of aromatic ring-opening dioxygenase n=1 Tax=Hydrocarboniphaga effusa AP103 TaxID=1172194 RepID=I7ZAX2_9GAMM)

HSP 1 Score: 231 bits (588), Expect = 1.280e-69
Identity = 136/275 (49.45%), Postives = 175/275 (63.64%), Query Frame = 2
Query:  167 VFISHGGGPCFFYEAAGPFSAIDKNSRVAADFRKLST-VLPKPKVIVICTAHWEADGPKIRVTGQPAPSLVYDYYGFPAETYKLTYPAPGDPQLAADIVALLKGAGISAELELERGFDHGVFIPLKMIYPDADVPVVAISLSSTLDPAFHISVGKALSGLAGRGVLVFGSGMATHNLGMVRSAAAHGEGVPVEPRAGAFIDWLKATLGDGVSAQERERRLLRWTEEAPHARHSHPREEHLLPLHVAAGAAGFAAGELVLDATVFGGMSMASFAFG 988
            +FI+HGGGPCFF E   P    D    + A  R LS  V  KP+ +++ +AHWEA+  +  VT  P PSL+YDYYGFP  TY+L YPAPGDP LA +IV  L  AG+ AE++ ERGFDHGVF+PLK+IYP AD+PVV +SL + L+PA H++VG AL+ L  +GVL+ GSG + HN+   R     G+   +E     F  WL   L      + R+ RL  W E AP AR +HPREEHLLPL VAAGAAG   G+ +    VFG ++ + F FG
Sbjct:   10 LFIAHGGGPCFFMEWNPP----DTWRSLEAWLRGLSVEVGDKPRALLVVSAHWEAE--RYSVTAHPQPSLIYDYYGFPQHTYELQYPAPGDPALAEEIVRRLGVAGLPAEIDRERGFDHGVFVPLKLIYPQADIPVVQLSLRAGLNPAEHLAVGAALAPLREQGVLIIGSGYSYHNM---RGYGGAGQRPSIE-----FDRWLNEALT--ADPETRKERLRDW-ERAPSARAAHPREEHLLPLMVAAGAAGQDIGKRLFGELVFG-VATSGFRFG 266          
BLAST of jgi.p|Trimin1|55500 vs. uniprot
Match: A0A354Z8M8_9SPIO (Dioxygenase n=1 Tax=Spirochaetaceae bacterium TaxID=1898206 RepID=A0A354Z8M8_9SPIO)

HSP 1 Score: 231 bits (588), Expect = 1.700e-69
Identity = 125/269 (46.47%), Postives = 173/269 (64.31%), Query Frame = 2
Query:  167 VFISHGGGPCFFYEAAGPFSAIDKNSRVAADFRKLSTVLPKPKVIVICTAHWEADGPKIRVTGQPAPSLVYDYYGFPAETYKLTYPAPGDPQLAADIVALLKGAGISAELELERGFDHGVFIPLKMIYPDADVPVVAISLSSTLDPAFHISVGKALSGLAGRGVLVFGSGMATHNLGMVRSAAAHGEGVPVEPRAGAFIDWLKATLGDGVSAQERERRLLRWTEEAPHARHSHPREEHLLPLHVAAGAAGFAAGELVLDATVFGGMSMA 973
            V++SHGGGP      AG  + +     + A  RK       P+ I++ +AHWEA  P+  +TG   PSL+YDYYGFP + Y++TYPAPG+P++   +  LL+ +GIS+ ++  RGFDHG+FIPLK++YPDAD+P V +SL   LDP  H+++GKAL  L  + +LV GSG + HN+G   + + HG+  P +PR  AF +WL       +S  ERERRL  W EEAPHAR+ HPREEHLLPLHV AG A   A  ++ D  + G  ++A
Sbjct:   19 VYLSHGGGPLPILGDAGHRAMVQFMEALPAKLRK-------PEAILVISAHWEA--PEATLTGGETPSLLYDYYGFPEKAYEITYPAPGNPRMVELVAGLLRKSGISSRIDTNRGFDHGMFIPLKLMYPDADIPTVQMSLLRNLDPVSHLNLGKALRPLMEQNILVIGSGFSFHNIG---AFSWHGKAAP-DPRNEAFQNWLIDCCTGALSESERERRLSAW-EEAPHARYCHPREEHLLPLHVCAGMANKPA-RVIFDDDILGKRAVA 272          
BLAST of jgi.p|Trimin1|55500 vs. uniprot
Match: UPI001CA76C71 (dioxygenase n=1 Tax=Sphingomonas colocasiae TaxID=1848973 RepID=UPI001CA76C71)

HSP 1 Score: 229 bits (585), Expect = 5.770e-69
Identity = 135/262 (51.53%), Postives = 165/262 (62.98%), Query Frame = 2
Query:  170 FISHGGGPCFFYE---AAGPFSAIDKNSRVAADFRKLSTVLP-KPKVIVICTAHWEADGPKIRVTGQPAPSLVYDYYGFPAETYKLTYPAPGDPQLAADIVALLKGAGISAELELERGFDHGVFIPLKMIYPDADVPVVAISLSSTLDPAFHISVGKALSGLAGRGVLVFGSGMATHNLGMVRSAAAHGEGVPVEPRAGAFIDWLKATLGDGVSAQERERRLLRWTEEAPHARHSHPREEHLLPLHVAAGAAGFAAGELVLD 943
            FI HGGGPCFF +     GP    DK   +AA  R L+  LP KPK IV+ + HWE +      +   AP+++YDY GFP  TY+L YPAPG P++AA IV LLKGAG++A     RGFDHG+FIPL +I+PDAD+PVV +SL+  LDP  H+  G+AL  L   GVL+ GSGM+ HN+   R+ AA     P E    AF  WL  T+ D   A  R R L  W E AP AR++HPREEHLLPL VAAGAAG A GE V  
Sbjct:   20 FIPHGGGPCFFMDWRQMGGPADTWDK---MAAWLRSLAATLPAKPKAIVVISGHWEEE--VFTASTAAAPAMIYDYTGFPPHTYELQYPAPGAPEVAARIVELLKGAGLAAGTSPSRGFDHGIFIPLLLIFPDADIPVVPLSLTRDLDPEVHLKAGQALQALREEGVLIIGSGMSYHNMRAFRTPAAT---APSE----AFDRWLTDTVRD-EDAGSRWRGLAHWAE-APAARNAHPREEHLLPLMVAAGAAGDAPGEQVFS 267          
BLAST of jgi.p|Trimin1|55500 vs. uniprot
Match: A0A522CMS9_9PROT (Dioxygenase n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A522CMS9_9PROT)

HSP 1 Score: 228 bits (582), Expect = 9.500e-69
Identity = 132/281 (46.98%), Postives = 172/281 (61.21%), Query Frame = 2
Query:  149 RALPRSVFISHGGGPCFFYEAAGPFSAIDKNSRVAADFRKLSTVLP-KPKVIVICTAHWEADGPKIRVTGQPAPSLVYDYYGFPAETYKLTYPAPGDPQLAADIVALLKGAGISAELELERGFDHGVFIPLKMIYPDADVPVVAISLSSTLDPAFHISVGKALSGLAGRGVLVFGSGMATHNLGMVRSAAAHGEGVPVEPRAGAFIDWLKATLGDGVSAQERERRLLRWTEEAPHARHSHPREEHLLPLHVAAGAAGFAAGELVLDATVFGGMSMASFAFG 988
            ++LP + FI HGGGPCFF +   P    D   ++    + L + +P KPK I++ +AHWE D     V   PAP L+YDYYGFP ETY+L YPAPG P LA  +  LL+ AG+ A L   RG+DHGVF+PLK+IYPDA++PVV +SL   LDPA H++ G+AL+ L   GVL+ GSGM+ HNL         G+       +  F  WL  T     + Q+R+  L+ W E AP AR +HPREEHLLPL V AGAAG  AG   L  TV G  +++ + FG
Sbjct:    2 KSLP-AYFIPHGGGPCFFMDWDPP----DTWKKMGDWLKSLPSSMPEKPKAILVISAHWEEDA--FTVMSNPAPPLIYDYYGFPPETYELKYPAPGAPDLAKKVAGLLENAGLPARLNDARGYDHGVFVPLKLIYPDAEIPVVQLSLRRNLDPAQHLAAGRALASLRDEGVLIVGSGMSYHNLEKFFRGDRQGD-------SQKFDAWL--TQAATSAPQQRDDMLVHWAE-APSARQAHPREEHLLPLMVVAGAAGGDAGHQTLSDTVMG-CAISGYRFG 264          
BLAST of jgi.p|Trimin1|55500 vs. uniprot
Match: A0A3B9P8V8_9CHLR (Dioxygenase n=1 Tax=Anaerolineaceae bacterium TaxID=2024896 RepID=A0A3B9P8V8_9CHLR)

HSP 1 Score: 228 bits (580), Expect = 2.010e-68
Identity = 124/272 (45.59%), Postives = 162/272 (59.56%), Query Frame = 2
Query:  143 TCRALPRSVFISHGGGPCFFYEAAGPFSAIDKNSRVAADFRKLSTVLPKPKVIVICTAHWEADGPKIRVTGQPAPSLVYDYYGFPAETYKLTYPAPGDPQLAADIVALLKGAGISAELELERGFDHGVFIPLKMIYPDADVPVVAISLSSTLDPAFHISVGKALSGLAGRGVLVFGSGMATHNLGMVRSAAAHGEGVPVEPRAGAFIDWLKATLGDGVSAQERERRLLRWTEEAPHARHSHPREEHLLPLHVAAGAAGFAAGELVLDATVFG 958
            T R   R V+ SHGGGP        P      +  +    R+L   LPKP+ I++ +AHWE   P +   G   P + YDYYGFP   Y++ YPAPG P LAA I   L+  GI++++   RGFDHG+FIPL M+YP+AD+P + +SL   L PAFHI++GKAL  L    +LV GSG + HN+    S+  H +   V PR  AF DWL  T+   +  +ERE RL  W E APHAR+ HPREEHLLPLHV AG AG   G+++ D  + G
Sbjct:    2 TSRDQTRIVYFSHGGGPL-------PLLGDPGHQAMVNFMRQLPEQLPKPEAILVISAHWEEPVPTL--LGAANPPMFYDYYGFPELAYEINYPAPGHPSLAAHIAETLENTGITSKINKTRGFDHGLFIPLSMMYPEADIPALQLSLRQGLSPAFHITLGKALQSLRNENLLVIGSGFSFHNI----SSFFHHDPDMVNPRNNAFQDWLIETITSDIDQEERESRLAAW-ESAPHARYCHPREEHLLPLHVCAGLAG-RRGQVIFDDLIMG 258          
BLAST of jgi.p|Trimin1|55500 vs. uniprot
Match: A0A3C0JHL1_9GAMM (Dioxygenase n=2 Tax=Gammaproteobacteria TaxID=1236 RepID=A0A3C0JHL1_9GAMM)

HSP 1 Score: 228 bits (580), Expect = 2.210e-68
Identity = 124/275 (45.09%), Postives = 170/275 (61.82%), Query Frame = 2
Query:  167 VFISHGGGPCFFYE-AAGPFSAIDKNSRVAADFRKLSTVLPKPKVIVICTAHWEADGPKIRVTGQPAPSLVYDYYGFPAETYKLTYPAPGDPQLAADIVALLKGAGISAELELERGFDHGVFIPLKMIYPDADVPVVAISLSSTLDPAFHISVGKALSGLAGRGVLVFGSGMATHNLGMVRSAAAHGEGVPVEPRAGAFIDWLKATLGDGVSAQERERRLLRWTEEAPHARHSHPREEHLLPLHVAAGAAGFAAGELVLDATVFGGMSMASFAFG 988
            ++I HGGGPCFF E   GP    D+      +  K  ++  KP  IVI +AHWE +   I++  QP+P L +DYYGFP  TY+LTYPAPG P+LA  I +LL  A I +EL+ + G+DHG F+PLK+++PDAD+PVV +SL   LDPAFHI VG AL  L  + +L+ GSGM+ HN+ ++R    HG+   +   +  F  WL  T        ER + L +W+  AP  +HSHPREEHLLPL V AG+AG   G+ +    V G   ++++ FG
Sbjct:    9 IYIPHGGGPCFFMEWTRGPADTWDRMKHWLQNLHK--SLPSKPSAIVIISAHWEEN--VIKINSQPSPQLYFDYYGFPPHTYELTYPAPGSPELAKQIQSLLTSADIKSELDPDHGYDHGTFVPLKVMFPDADIPVVQVSLQCQLDPAFHIQVGAALKSLREQNILILGSGMSFHNMEILR----HGQ--DINNHSKTFDHWLTRTCSS--LPLERNKNLAQWSH-APSGKHSHPREEHLLPLMVVAGSAGEDQGKKIFGDNVMGA-DVSAYQFG 269          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|55500 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CEX8_9STRA4.460e-205100.00Catalytic LigB subunit of aromatic ring-opening di... [more]
A0A2E2J864_9GAMM1.100e-7147.83Dioxygenase n=1 Tax=Polycyclovorans sp. TaxID=2024... [more]
A0A1Y5G304_9GAMM4.880e-7047.84Dioxygenase n=1 Tax=Gammaproteobacteria bacterium ... [more]
A0A2N3BD35_9PROT1.000e-6948.34Dioxygenase (Fragment) n=1 Tax=Alphaproteobacteria... [more]
I7ZAX2_9GAMM1.280e-6949.45Catalytic LigB subunit of aromatic ring-opening di... [more]
A0A354Z8M8_9SPIO1.700e-6946.47Dioxygenase n=1 Tax=Spirochaetaceae bacterium TaxI... [more]
UPI001CA76C715.770e-6951.53dioxygenase n=1 Tax=Sphingomonas colocasiae TaxID=... [more]
A0A522CMS9_9PROT9.500e-6946.98Dioxygenase n=1 Tax=Alphaproteobacteria bacterium ... [more]
A0A3B9P8V8_9CHLR2.010e-6845.59Dioxygenase n=1 Tax=Anaerolineaceae bacterium TaxI... [more]
A0A3C0JHL1_9GAMM2.210e-6845.09Dioxygenase n=2 Tax=Gammaproteobacteria TaxID=1236... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_30contigContig_30:82206..83548 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|55500|CE55499_92
DescriptionCatalytic LigB subunit of aromatic ring-opening dioxygenase
COG categoryS
Max annot lvl1236|Gammaproteobacteria
EggNOG OGsCOG3384@1|root,COG3384@2|Bacteria,1MXJZ@1224|Proteobacteria,1RR5P@1236|Gammaproteobacteria,4664C@72275|Alteromonadaceae
Evalue1.82e-70
Seed ortholog1121937.AUHJ01000012_gene2804
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionExtradiol ring-cleavage dioxygenase, class III enzyme, subunit B
Ec32 orthologEc-08_002800.1
TranscriptId55822
TrackFilteredModels1
ProteinId55500
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|55500gene_5311Tribonema minus UTEX_B_3156 geneContig_30 82206..83548 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_5311_1exon_5311_1Tribonema minus UTEX_B_3156 exonContig_30 82206..83548 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_5311UTR5_5311Tribonema minus UTEX_B_3156 five_prime_UTRContig_30 82206..82329 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_5311CDS_5311Tribonema minus UTEX_B_3156 CDSContig_30 82330..83202 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_5311UTR3_5311Tribonema minus UTEX_B_3156 three_prime_UTRContig_30 83203..83548 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|55500Trimin1|55500|CE55499_92Tribonema minus UTEX_B_3156 polypeptideContig_30 82330..83202 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_5311 ID=mRNA_5311|Name=jgi.p|Trimin1|55500|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1343bp|location=Sequence derived from alignment at Contig_30:82206..83548+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GTTACTCATAGCATCACATCAAAGCAGCACTACCTCGAGCATCAGCTGGC
TGTAGCAGTGCTATAGCGGCAGTGACAGGAGCTATCAAAGCGATCAAGTA
ACCAGGAGCAAGAGCACCTGGAGTATGTCGCTTGCAAAGTCGACGTGCCG
CGCGCTGCCACGGTCCGTTTTCATTAGCCACGGCGGCGGCCCCTGTTTCT
TCTACGAGGCAGCCGGCCCGTTTTCAGCAATCGACAAGAACTCGCGAGTG
GCGGCGGACTTTCGCAAATTGTCGACGGTGCTTCCCAAGCCCAAAGTCAT
CGTGATTTGCACAGCACATTGGGAGGCAGACGGACCCAAGATTCGAGTGA
CGGGGCAGCCGGCGCCATCGTTGGTCTATGACTACTATGGATTCCCCGCA
GAGACCTACAAGCTGACGTACCCTGCTCCCGGCGACCCCCAGCTCGCAGC
AGACATCGTCGCGCTGCTGAAGGGCGCAGGCATCTCGGCCGAGCTGGAGC
TCGAGAGGGGCTTTGACCACGGCGTCTTCATCCCGCTGAAGATGATCTAC
CCCGATGCCGACGTCCCCGTGGTCGCCATCAGCCTGTCCTCCACGCTGGA
CCCCGCCTTCCACATCAGCGTGGGCAAGGCGCTGTCGGGGCTCGCCGGCC
GCGGCGTCCTCGTCTTCGGCAGCGGCATGGCGACGCACAACCTCGGCATG
GTGCGCAGCGCGGCGGCGCACGGCGAGGGCGTGCCCGTGGAGCCGCGCGC
CGGCGCCTTCATCGACTGGCTCAAGGCGACGCTCGGCGACGGCGTCAGCG
CTCAGGAGCGCGAGCGGCGGCTGCTGCGCTGGACGGAGGAGGCGCCGCAC
GCGCGCCACTCACACCCGCGCGAGGAACATCTGCTGCCGCTGCACGTGGC
GGCCGGCGCCGCGGGGTTCGCGGCGGGGGAGCTGGTGCTCGACGCCACGG
TGTTTGGCGGCATGTCCATGGCGTCGTTCGCGTTTGGGCAGCAGTAGCTG
CCGCTGTGCTGCCTAGGGACGGGGGTTGCTGTTGTCGTGTAGCGCGGGGC
GTCGGTCGAGAGCAGAGCACTTGCTGCCGCTCTCGCTGGCGGCGAGCAGC
GCGTGCGCCGTCGTTGTGATTTTGAGCACATGTAGCAGCGGCCGTCCGCG
CATTAGTTTGCTATGATGACAAATAAGCGCGCAAGCGATGTTGTGGTGGT
GGTGCCATATGGCGATTTGTAGAGAAGGCGGGTGGTGGTTGCGAGGCACA
GATGCACAACAGCATAACCACATTGTGGGCGTTAACTGCACACTGCGCTG
CAGGCATGCCAACGGCAGCAATACCAATGTACTTCACTTGCAC
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protein sequence of jgi.p|Trimin1|55500

>Trimin1|55500|CE55499_92 ID=Trimin1|55500|CE55499_92|Name=jgi.p|Trimin1|55500|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=291bp
MSLAKSTCRALPRSVFISHGGGPCFFYEAAGPFSAIDKNSRVAADFRKLS
TVLPKPKVIVICTAHWEADGPKIRVTGQPAPSLVYDYYGFPAETYKLTYP
APGDPQLAADIVALLKGAGISAELELERGFDHGVFIPLKMIYPDADVPVV
AISLSSTLDPAFHISVGKALSGLAGRGVLVFGSGMATHNLGMVRSAAAHG
EGVPVEPRAGAFIDWLKATLGDGVSAQERERRLLRWTEEAPHARHSHPRE
EHLLPLHVAAGAAGFAAGELVLDATVFGGMSMASFAFGQQ*
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mRNA from alignment at Contig_30:82206..83548+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5311 ID=mRNA_5311|Name=jgi.p|Trimin1|55500|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1343bp|location=Sequence derived from alignment at Contig_30:82206..83548+ (Tribonema minus UTEX_B_3156 )
GTTACTCATAGCATCACATCAAAGCAGCACTACCTCGAGCATCAGCTGGC TGTAGCAGTGCTATAGCGGCAGTGACAGGAGCTATCAAAGCGATCAAGTA ACCAGGAGCAAGAGCACCTGGAGTATGTCGCTTGCAAAGTCGACGTGCCG CGCGCTGCCACGGTCCGTTTTCATTAGCCACGGCGGCGGCCCCTGTTTCT TCTACGAGGCAGCCGGCCCGTTTTCAGCAATCGACAAGAACTCGCGAGTG GCGGCGGACTTTCGCAAATTGTCGACGGTGCTTCCCAAGCCCAAAGTCAT CGTGATTTGCACAGCACATTGGGAGGCAGACGGACCCAAGATTCGAGTGA CGGGGCAGCCGGCGCCATCGTTGGTCTATGACTACTATGGATTCCCCGCA GAGACCTACAAGCTGACGTACCCTGCTCCCGGCGACCCCCAGCTCGCAGC AGACATCGTCGCGCTGCTGAAGGGCGCAGGCATCTCGGCCGAGCTGGAGC TCGAGAGGGGCTTTGACCACGGCGTCTTCATCCCGCTGAAGATGATCTAC CCCGATGCCGACGTCCCCGTGGTCGCCATCAGCCTGTCCTCCACGCTGGA CCCCGCCTTCCACATCAGCGTGGGCAAGGCGCTGTCGGGGCTCGCCGGCC GCGGCGTCCTCGTCTTCGGCAGCGGCATGGCGACGCACAACCTCGGCATG GTGCGCAGCGCGGCGGCGCACGGCGAGGGCGTGCCCGTGGAGCCGCGCGC CGGCGCCTTCATCGACTGGCTCAAGGCGACGCTCGGCGACGGCGTCAGCG CTCAGGAGCGCGAGCGGCGGCTGCTGCGCTGGACGGAGGAGGCGCCGCAC GCGCGCCACTCACACCCGCGCGAGGAACATCTGCTGCCGCTGCACGTGGC GGCCGGCGCCGCGGGGTTCGCGGCGGGGGAGCTGGTGCTCGACGCCACGG TGTTTGGCGGCATGTCCATGGCGTCGTTCGCGTTTGGGCAGCAGTAGCTG CCGCTGTGCTGCCTAGGGACGGGGGTTGCTGTTGTCGTGTAGCGCGGGGC GTCGGTCGAGAGCAGAGCACTTGCTGCCGCTCTCGCTGGCGGCGAGCAGC GCGTGCGCCGTCGTTGTGATTTTGAGCACATGTAGCAGCGGCCGTCCGCG CATTAGTTTGCTATGATGACAAATAAGCGCGCAAGCGATGTTGTGGTGGT GGTGCCATATGGCGATTTGTAGAGAAGGCGGGTGGTGGTTGCGAGGCACA GATGCACAACAGCATAACCACATTGTGGGCGTTAACTGCACACTGCGCTG CAGGCATGCCAACGGCAGCAATACCAATGTACTTCACTTGCAC
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Coding sequence (CDS) from alignment at Contig_30:82206..83548+

>mRNA_5311 ID=mRNA_5311|Name=jgi.p|Trimin1|55500|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=873bp|location=Sequence derived from alignment at Contig_30:82206..83548+ (Tribonema minus UTEX_B_3156 )
ATGTCGCTTGCAAAGTCGACGTGCCGCGCGCTGCCACGGTCCGTTTTCAT
TAGCCACGGCGGCGGCCCCTGTTTCTTCTACGAGGCAGCCGGCCCGTTTT
CAGCAATCGACAAGAACTCGCGAGTGGCGGCGGACTTTCGCAAATTGTCG
ACGGTGCTTCCCAAGCCCAAAGTCATCGTGATTTGCACAGCACATTGGGA
GGCAGACGGACCCAAGATTCGAGTGACGGGGCAGCCGGCGCCATCGTTGG
TCTATGACTACTATGGATTCCCCGCAGAGACCTACAAGCTGACGTACCCT
GCTCCCGGCGACCCCCAGCTCGCAGCAGACATCGTCGCGCTGCTGAAGGG
CGCAGGCATCTCGGCCGAGCTGGAGCTCGAGAGGGGCTTTGACCACGGCG
TCTTCATCCCGCTGAAGATGATCTACCCCGATGCCGACGTCCCCGTGGTC
GCCATCAGCCTGTCCTCCACGCTGGACCCCGCCTTCCACATCAGCGTGGG
CAAGGCGCTGTCGGGGCTCGCCGGCCGCGGCGTCCTCGTCTTCGGCAGCG
GCATGGCGACGCACAACCTCGGCATGGTGCGCAGCGCGGCGGCGCACGGC
GAGGGCGTGCCCGTGGAGCCGCGCGCCGGCGCCTTCATCGACTGGCTCAA
GGCGACGCTCGGCGACGGCGTCAGCGCTCAGGAGCGCGAGCGGCGGCTGC
TGCGCTGGACGGAGGAGGCGCCGCACGCGCGCCACTCACACCCGCGCGAG
GAACATCTGCTGCCGCTGCACGTGGCGGCCGGCGCCGCGGGGTTCGCGGC
GGGGGAGCTGGTGCTCGACGCCACGGTGTTTGGCGGCATGTCCATGGCGT
CGTTCGCGTTTGGGCAGCAGTAG
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