mRNA_5295 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|164582
Unique NamemRNA_5295
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|164582 vs. uniprot
Match: A0A836CDI7_9STRA (Homeodomain-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDI7_9STRA)

HSP 1 Score: 151 bits (382), Expect = 1.040e-46
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 1 
Query:    1 KWPAVAELLARHNARRCRDRWLQHLNPTLERTKSSWTTAEENVLWDAQQRLGNKWVAIAKLLKGRTDNDVK 213
            KWPAVAELLARHNARRCRDRWLQHLNPTLERTKSSWTTAEENVLWDAQQRLGNKWVAIAKLLKGRTDNDVK
Sbjct:    1 KWPAVAELLARHNARRCRDRWLQHLNPTLERTKSSWTTAEENVLWDAQQRLGNKWVAIAKLLKGRTDNDVK 71
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BLAST of jgi.p|Trimin1|164582 vs. uniprot
Match: A0A836CJ16_9STRA (Homeodomain-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJ16_9STRA)

HSP 1 Score: 130 bits (328), Expect = 5.230e-38
Identity = 60/71 (84.51%), Postives = 65/71 (91.55%), Query Frame = 1 
Query:    1 KWPAVAELLARHNARRCRDRWLQHLNPTLERTKSSWTTAEENVLWDAQQRLGNKWVAIAKLLKGRTDNDVK 213
            KWPAVAELL RHNA+ C++RW+QHLNPTLE TKSSWTTAEENVLWDAQQRLGN+WV IAKLL GRTDN VK
Sbjct:   23 KWPAVAELLPRHNAKSCQERWVQHLNPTLEITKSSWTTAEENVLWDAQQRLGNQWVEIAKLLPGRTDNQVK 93
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BLAST of jgi.p|Trimin1|164582 vs. uniprot
Match: A0A835YZB3_9STRA (Homeodomain-like protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZB3_9STRA)

HSP 1 Score: 114 bits (286), Expect = 1.100e-31
Identity = 55/71 (77.46%), Postives = 61/71 (85.92%), Query Frame = 1 
Query:    1 KWPAVAELLARHNARRCRDRWLQHLNPTLERTKSSWTTAEENVLWDAQQRLGNKWVAIAKLLKGRTDNDVK 213
            KWPAVAELL RHNA RCR+RW+QHL+P +  TK SWT AEE+VL DAQQRLGN W AIAKLLKGRTDN+VK
Sbjct:   25 KWPAVAELLPRHNATRCRERWVQHLSPEI--TKRSWTPAEEDVLRDAQQRLGNSWAAIAKLLKGRTDNEVK 93
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BLAST of jgi.p|Trimin1|164582 vs. uniprot
Match: A0A672GPH3_SALFA (Uncharacterized protein n=1 Tax=Salarias fasciatus TaxID=181472 RepID=A0A672GPH3_SALFA)

HSP 1 Score: 84.0 bits (206), Expect = 3.680e-18
Identity = 33/70 (47.14%), Postives = 53/70 (75.71%), Query Frame = 1 
Query:    4 WPAVAELLARHNARRCRDRWLQHLNPTLERTKSSWTTAEENVLWDAQQRLGNKWVAIAKLLKGRTDNDVK 213
            W  +A+ ++  N ++CR+RW  HLNP +  TK +WT AE++++  AQ+RLGN+W AI+K+L+GR+DN +K
Sbjct:  115 WTTIAKHMSTRNGKQCRERWCNHLNPAI--TKGNWTQAEDSIITKAQRRLGNRWAAISKMLRGRSDNSIK 182
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BLAST of jgi.p|Trimin1|164582 vs. uniprot
Match: A0A835YS16_9STRA (Homeodomain-like protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YS16_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 2.760e-17
Identity = 39/77 (50.65%), Postives = 51/77 (66.23%), Query Frame = 1 
Query:    1 KWPAVAELLARH------NARRCRDRWLQHLNPTLERTKSSWTTAEENVLWDAQQRLGNKWVAIAKLLKGRTDNDVK 213
            +W  VA+ L         + ++CR RWL HL+P+L   K  WT+ EE V++DAQ+RLGNKW  IAKLL GRTDN +K
Sbjct:   24 RWSLVAQHLNMEIVGVVRSGKQCRTRWLNHLDPSLR--KEPWTSEEEQVIYDAQRRLGNKWAEIAKLLTGRTDNAIK 98
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BLAST of jgi.p|Trimin1|164582 vs. uniprot
Match: A0A835ZPI2_9STRA (Homeodomain-like protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZPI2_9STRA)

HSP 1 Score: 77.4 bits (189), Expect = 8.960e-17
Identity = 37/77 (48.05%), Postives = 52/77 (67.53%), Query Frame = 1 
Query:    1 KWPAVAELLARH------NARRCRDRWLQHLNPTLERTKSSWTTAEENVLWDAQQRLGNKWVAIAKLLKGRTDNDVK 213
            +W  +A+ L++       + ++CR RWL HL+P+L R    WT  EE V+++AQ+RLGNKW  IAKLL GRTDN +K
Sbjct:   24 RWSLIAQNLSKEVEGAVRSGKQCRTRWLNHLDPSLRR--DPWTDEEEQVIYNAQRRLGNKWAEIAKLLTGRTDNAIK 98
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BLAST of jgi.p|Trimin1|164582 vs. uniprot
Match: F0XZ12_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XZ12_AURAN)

HSP 1 Score: 76.6 bits (187), Expect = 2.050e-16
Identity = 38/79 (48.10%), Postives = 51/79 (64.56%), Query Frame = 1 
Query:   10 AVAELLARHNARR-----------CRDRWLQHLNPTLERTKSSWTTAEENVLWDAQQRLGNKWVAIAKLLKGRTDNDVK 213
            A+  L+++H  +R           CR RWL HL+P ++R    W+  EENV+++AQQRLGNKW  IAKLL GRTDN +K
Sbjct:   34 AIMRLVSKHGTKRWAVSGFRSGKQCRTRWLNHLDPGIKR--EPWSEHEENVIYEAQQRLGNKWAEIAKLLPGRTDNAIK 110
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BLAST of jgi.p|Trimin1|164582 vs. uniprot
Match: MYBA_CHICK (Myb-related protein A n=32 Tax=Galloanserae TaxID=1549675 RepID=MYBA_CHICK)

HSP 1 Score: 81.3 bits (199), Expect = 2.660e-16
Identity = 36/71 (50.70%), Postives = 51/71 (71.83%), Query Frame = 1 
Query:    1 KWPAVAELLARHNARRCRDRWLQHLNPTLERTKSSWTTAEENVLWDAQQRLGNKWVAIAKLLKGRTDNDVK 213
            +W  +A+ L     ++CR+RW  HLNP ++  KSSWT AE+ V+++A +RLGN+W  IAKLL GRTDN +K
Sbjct:  109 RWSLIAKHLKGRIGKQCRERWHNHLNPEVK--KSSWTEAEDRVIYEAHKRLGNRWAEIAKLLPGRTDNSIK 177
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BLAST of jgi.p|Trimin1|164582 vs. uniprot
Match: A0A3Q4HJ67_NEOBR (Uncharacterized protein n=1 Tax=Neolamprologus brichardi TaxID=32507 RepID=A0A3Q4HJ67_NEOBR)

HSP 1 Score: 78.6 bits (192), Expect = 3.260e-16
Identity = 36/71 (50.70%), Postives = 49/71 (69.01%), Query Frame = 1 
Query:    1 KWPAVAELLARHNARRCRDRWLQHLNPTLERTKSSWTTAEENVLWDAQQRLGNKWVAIAKLLKGRTDNDVK 213
            +W  VA+ L   N ++CR+RW  HLNPT++  KSSWT  E+ V+  A + LGN+W  I+KLL GRTDN +K
Sbjct:  117 RWSLVAKHLHTRNGKQCRERWHNHLNPTVK--KSSWTLDEDRVICQAHRLLGNRWADISKLLPGRTDNSIK 185
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BLAST of jgi.p|Trimin1|164582 vs. uniprot
Match: UPI001C4BD3B9 (transcriptional activator Myb-like n=1 Tax=Plectropomus leopardus TaxID=160734 RepID=UPI001C4BD3B9)

HSP 1 Score: 78.6 bits (192), Expect = 3.680e-16
Identity = 35/71 (49.30%), Postives = 49/71 (69.01%), Query Frame = 1 
Query:    1 KWPAVAELLARHNARRCRDRWLQHLNPTLERTKSSWTTAEENVLWDAQQRLGNKWVAIAKLLKGRTDNDVK 213
            +W  +A+ L   N ++CR+RW  HLNPT++  KSSWT  E+ V+  A + LGN+W  I+KLL GRTDN +K
Sbjct:  105 RWSLIAKHLLSRNGKQCRERWHNHLNPTVK--KSSWTLDEDRVICQAHRLLGNRWADISKLLPGRTDNSIK 173
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|164582 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CDI7_9STRA1.040e-46100.00Homeodomain-like protein n=1 Tax=Tribonema minus T... [more]
A0A836CJ16_9STRA5.230e-3884.51Homeodomain-like protein n=1 Tax=Tribonema minus T... [more]
A0A835YZB3_9STRA1.100e-3177.46Homeodomain-like protein (Fragment) n=1 Tax=Tribon... [more]
A0A672GPH3_SALFA3.680e-1847.14Uncharacterized protein n=1 Tax=Salarias fasciatus... [more]
A0A835YS16_9STRA2.760e-1750.65Homeodomain-like protein (Fragment) n=1 Tax=Tribon... [more]
A0A835ZPI2_9STRA8.960e-1748.05Homeodomain-like protein (Fragment) n=1 Tax=Tribon... [more]
F0XZ12_AURAN2.050e-1648.10Uncharacterized protein (Fragment) n=1 Tax=Aureoco... [more]
MYBA_CHICK2.660e-1650.70Myb-related protein A n=32 Tax=Galloanserae TaxID=... [more]
A0A3Q4HJ67_NEOBR3.260e-1650.70Uncharacterized protein n=1 Tax=Neolamprologus bri... [more]
UPI001C4BD3B93.680e-1649.30transcriptional activator Myb-like n=1 Tax=Plectro... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_32contigContig_32:997408..997623 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|164582|e_gw1.32.11.1
BRITEko00000,ko00001,ko03000
KEGG Pathwayko04151,ko05166,map04151,map05166
KEGG koko:K09420,ko:K09421
GOsGO:0000003,GO:0000086,GO:0000117,GO:0000226,GO:0000228,GO:0000278,GO:0000280,GO:0000281,GO:0000785,GO:0000790,GO:0000791,GO:0000910,GO:0000976,GO:0000977,GO:0000978,GO:0000981,GO:0000982,GO:0000987,GO:0000988,GO:0000989,GO:0001012,GO:0001067,GO:0001076,GO:0001077,GO:0001134,GO:0001135,GO:0001228,GO:0002064,GO:0002065,GO:0002066,GO:0003006,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003700,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0005700,GO:0005719,GO:0006139,GO:0006259,GO:0006277,GO:0006323,GO:0006351,GO:0006355,GO:0006357,GO:0006366,GO:0006725,GO:0006807,GO:0006996,GO:0007010,GO:0007017,GO:0007030,GO:0007049,GO:0007051,GO:0007088,GO:0007098,GO:0007099,GO:0007127,GO:0007140,GO:0007141,GO:0007276,GO:0007281,GO:0007283,GO:0007292,GO:0007304,GO:0007306,GO:0007307,GO:0007346,GO:0008150,GO:0008152,GO:0008283,GO:0008284,GO:0008361,GO:0009058,GO:0009059,GO:0009653,GO:0009888,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010256,GO:0010389,GO:0010467,GO:0010468,GO:0010528,GO:0010529,GO:0010556,GO:0010557,GO:0010564,GO:0010604,GO:0010628,GO:0010927,GO:0010971,GO:0016043,GO:0016070,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019953,GO:0022402,GO:0022412,GO:0022414,GO:0022607,GO:0030154,GO:0030261,GO:0030703,GO:0030707,GO:0030855,GO:0031023,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031523,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032504,GO:0032535,GO:0032774,GO:0032989,GO:0032991,GO:0033043,GO:0034587,GO:0034641,GO:0034645,GO:0034654,GO:0034660,GO:0042127,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043565,GO:0044085,GO:0044212,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0044703,GO:0044770,GO:0044772,GO:0044839,GO:0045787,GO:0045792,GO:0045893,GO:0045931,GO:0045935,GO:0045944,GO:0046483,GO:0048232,GO:0048285,GO:0048468,GO:0048477,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048609,GO:0048646,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0051128,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0051276,GO:0051298,GO:0051301,GO:0051321,GO:0051704,GO:0051726,GO:0051783,GO:0060255,GO:0060429,GO:0061640,GO:0061982,GO:0065007,GO:0065008,GO:0070013,GO:0070925,GO:0071103,GO:0071704,GO:0071840,GO:0071897,GO:0080090,GO:0090066,GO:0090068,GO:0090282,GO:0090304,GO:0097159,GO:0097659,GO:0098534,GO:0140013,GO:0140110,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1901987,GO:1901989,GO:1901990,GO:1901992,GO:1902680,GO:1902749,GO:1902751,GO:1903046,GO:1903047,GO:1903506,GO:1903508,GO:1990511,GO:1990837,GO:2000112,GO:2001141
Preferred nameMYBL1
DescriptionV-myb myeloblastosis viral oncogene homolog (avian)-like 1
COG categoryK
Max annot lvl33208|Metazoa
EggNOG OGsCOG5147@1|root,KOG0048@2759|Eukaryota,38EUR@33154|Opisthokonta,3BAYQ@33208|Metazoa,3CXMK@33213|Bilateria,482Q6@7711|Chordata,48WDS@7742|Vertebrata,49S4X@7898|Actinopterygii
Evalue1.52e-16
Seed ortholog69293.ENSGACP00000003879
Hectar predicted targeting categoryother localisation
TranscriptId164904
TrackFilteredModels1
ProteinId164582
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|164582gene_5295Tribonema minus UTEX_B_3156 geneContig_32 997408..997623 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_5295_1exon_5295_1Tribonema minus UTEX_B_3156 exonContig_32 997408..997623 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_5295CDS_5295Tribonema minus UTEX_B_3156 CDSContig_32 997408..997623 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|164582Trimin1|164582|e_gw1.32.11.1Tribonema minus UTEX_B_3156 polypeptideContig_32 997408..997623 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_5295 ID=mRNA_5295|Name=jgi.p|Trimin1|164582|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=216bp|location=Sequence derived from alignment at Contig_32:997408..997623+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
AAGTGGCCGGCCGTTGCGGAGCTCTTGGCACGGCACAACGCCAGGCGCTG
CCGAGACCGCTGGCTTCAACACCTAAACCCCACGCTGGAGCGCACAAAGA
GTTCCTGGACGACGGCGGAGGAGAACGTGCTCTGGGATGCTCAACAGCGC
CTTGGCAACAAATGGGTTGCCATTGCCAAGCTTCTGAAGGGGCGAACGGA
TAATGATGTAAAATAA
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protein sequence of jgi.p|Trimin1|164582

>Trimin1|164582|e_gw1.32.11.1 ID=Trimin1|164582|e_gw1.32.11.1|Name=jgi.p|Trimin1|164582|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=72bp
KWPAVAELLARHNARRCRDRWLQHLNPTLERTKSSWTTAEENVLWDAQQR
LGNKWVAIAKLLKGRTDNDVK*
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mRNA from alignment at Contig_32:997408..997623+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5295 ID=mRNA_5295|Name=jgi.p|Trimin1|164582|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=216bp|location=Sequence derived from alignment at Contig_32:997408..997623+ (Tribonema minus UTEX_B_3156 )
AAGTGGCCGGCCGTTGCGGAGCTCTTGGCACGGCACAACGCCAGGCGCTG
CCGAGACCGCTGGCTTCAACACCTAAACCCCACGCTGGAGCGCACAAAGA
GTTCCTGGACGACGGCGGAGGAGAACGTGCTCTGGGATGCTCAACAGCGC
CTTGGCAACAAATGGGTTGCCATTGCCAAGCTTCTGAAGGGGCGAACGGA
TAATGATGTAAAATAA
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Coding sequence (CDS) from alignment at Contig_32:997408..997623+

>mRNA_5295 ID=mRNA_5295|Name=jgi.p|Trimin1|164582|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=216bp|location=Sequence derived from alignment at Contig_32:997408..997623+ (Tribonema minus UTEX_B_3156 )
AAGTGGCCGGCCGTTGCGGAGCTCTTGGCACGGCACAACGCCAGGCGCTG
CCGAGACCGCTGGCTTCAACACCTAAACCCCACGCTGGAGCGCACAAAGA
GTTCCTGGACGACGGCGGAGGAGAACGTGCTCTGGGATGCTCAACAGCGC
CTTGGCAACAAATGGGTTGCCATTGCCAAGCTTCTGAAGGGGCGAACGGA
TAATGATGTAAAATAA
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