mRNA_5279 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|164627 vs. uniprot
Match: A0A836CDI2_9STRA (Galactose-binding domain-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDI2_9STRA) HSP 1 Score: 305 bits (781), Expect = 5.370e-105 Identity = 152/152 (100.00%), Postives = 152/152 (100.00%), Query Frame = 1 Query: 1 MDLALEVEGGSLVSASSYDMRHPPENIIDGKDSTFWSTTGGFPQEAIIKLKDTAGVSIQTITTVTTNVRRLEIEKSQGPGASRWEPVYSTVLDDTEGDIQLHSQSVRGVESSHIKIKLTSGWGEHASVHRVSVLGKLTGPVSTSGRPAAYRD 456 MDLALEVEGGSLVSASSYDMRHPPENIIDGKDSTFWSTTGGFPQEAIIKLKDTAGVSIQTITTVTTNVRRLEIEKSQGPGASRWEPVYSTVLDDTEGDIQLHSQSVRGVESSHIKIKLTSGWGEHASVHRVSVLGKLTGPVSTSGRPAAYRD Sbjct: 1 MDLALEVEGGSLVSASSYDMRHPPENIIDGKDSTFWSTTGGFPQEAIIKLKDTAGVSIQTITTVTTNVRRLEIEKSQGPGASRWEPVYSTVLDDTEGDIQLHSQSVRGVESSHIKIKLTSGWGEHASVHRVSVLGKLTGPVSTSGRPAAYRD 152
BLAST of jgi.p|Trimin1|164627 vs. uniprot
Match: A0A2D4BPZ1_PYTIN (F5/8 type C domain-containing protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BPZ1_PYTIN) HSP 1 Score: 122 bits (307), Expect = 4.740e-33 Identity = 59/135 (43.70%), Postives = 88/135 (65.19%), Query Frame = 1 Query: 1 MDLALEVEGGSLVSASSYDMRHPPENIIDGKDSTFWSTTGGFPQEAIIKLKDTAGVSIQTITTVTTNVRRLEIEKSQGPGASRWEPVYSTVLDDTEGDIQLHSQSVRGVESSHIKIKLTSGWGEHASVHRVSVLG 405 MDL L+ EG + A+S+D HPP+NI+DG ST W TTG FPQE I++L A VS + T +TNV+ + +E GP +WE ++ T + +++G +Q+ S+SVR ++ IK K+ SGW + ++HRVSV G Sbjct: 1 MDLTLDEEGAQVTVATSFDPNHPPKNILDGDQSTKWVTTGSFPQEVIVQLATMASVS--RVKTWSTNVKEVAVEVCSGPTPVKWERLFETKIPESDGGLQITSESVRPGDAVFIKFKILSGWNDFVALHRVSVEG 133
BLAST of jgi.p|Trimin1|164627 vs. uniprot
Match: A0A024UG56_9STRA (XRCC1_N domain-containing protein n=2 Tax=Aphanomyces TaxID=100860 RepID=A0A024UG56_9STRA) HSP 1 Score: 117 bits (293), Expect = 6.230e-31 Identity = 57/136 (41.91%), Postives = 91/136 (66.91%), Query Frame = 1 Query: 1 MDLALEVEGGSLVSASSYDMRHPPENIIDGKDSTFWSTTGGFPQEAIIKLKDTAGVSIQTITTVTTNVRRLEIEKSQGPGASRWEPVYSTVLDDTEGDIQLHSQSVRGVESSHIKIKLTSGWGEHASVHRVSVLGK 408 MDLAL+VEG + SA+S+D + PP N++DG+ ST W+T G +PQE I++L T+ +S + T TTN + + +E GP ++WE V T L + +G++Q+ +Q V ++S +K K+ SG+ + +VHR+SV GK Sbjct: 1 MDLALDVEGAQVTSATSFDPKFPPSNVLDGETSTKWATCGLYPQEIIVQLATTSVIS--KVKTWTTNAKHVVVEVCAGPVPTKWEKVADTNLGENDGNLQIETQVVSRDDASFVKFKVLSGYHDFITVHRISVEGK 134
BLAST of jgi.p|Trimin1|164627 vs. uniprot
Match: A0A3B5QXR2_XIPMA (F5/8 type C domain-containing protein n=8 Tax=Poeciliinae TaxID=586240 RepID=A0A3B5QXR2_XIPMA) HSP 1 Score: 115 bits (289), Expect = 1.990e-30 Identity = 55/129 (42.64%), Postives = 85/129 (65.89%), Query Frame = 1 Query: 13 LEVEGGSLVSASSYDMRHPPENIIDGKDSTFWSTTGGFPQEAIIKLKDTAGVSIQTITTVTTNVRRLEIEKSQGPGASRWEPVYSTVLDDTEGDIQLHSQSVRGVESSHIKIKLTSGWGEHASVHRVSV 399 ++ G +V ASS D HPPENI DG + TFW +TG FPQE II+ +T +S T+T + N++ L+IE++ P A+ +EPV ++ TEG +QL+S S++G ++H++ +T G+ SVHR+SV Sbjct: 2 IDSSGAHVVLASSSDENHPPENITDGNNKTFWMSTGMFPQEFIIRFPETTNIS--TVTMDSYNIKHLKIERNTSPNAANFEPVTQEEIEQTEGHLQLNSISLKGCRATHLRFIVTEGYDHFVSVHRISV 128
BLAST of jgi.p|Trimin1|164627 vs. uniprot
Match: A0A7S0USI0_9CHLO (Hypothetical protein n=1 Tax=Polytomella parva TaxID=51329 RepID=A0A7S0USI0_9CHLO) HSP 1 Score: 104 bits (259), Expect = 1.030e-25 Identity = 58/136 (42.65%), Postives = 86/136 (63.24%), Query Frame = 1 Query: 4 DLALEVEGGSLVSASSYDMRHPPENIIDGKDSTFWSTTGGFPQEAIIKLKDTAGVSIQTITTVTTNVRRLEIEKSQGPGASRWEPVYSTVLDDTEGDIQLHSQSVRGVESSHIKIKLTSGWGEHASVHRVSVLGKL 411 D A GG +V AS D R PP+NI+DGKD TFW TTG FPQ+ IIKL++ V I ITT++ +++R+ +EKS+ A+ +E V+ T L +Q V +++ ++ + SG GE A+V+RVSV+G+L Sbjct: 3 DYARAENGGQIVMASCGDERFPPDNILDGKDDTFWMTTGMFPQDFIIKLENL--VKISKITTLSFSIKRICVEKSEQENAASFEKVFETDLTARGDRMQTEVHQVN-IKARFLRFSILSGHGEFATVNRVSVVGEL 135
BLAST of jgi.p|Trimin1|164627 vs. uniprot
Match: A0A3Q1BXN5_AMPOC (Heat shock protein family B (small) member 11 n=4 Tax=Pomacentridae TaxID=30863 RepID=A0A3Q1BXN5_AMPOC) HSP 1 Score: 103 bits (257), Expect = 1.570e-25 Identity = 54/133 (40.60%), Postives = 81/133 (60.90%), Query Frame = 1 Query: 1 MDLALEVEGGSLVSASSYDMRHPPENIIDGKDSTFWSTTGGFPQEAIIKLKDTAGVSIQTITTVTTNVRRLEIEKSQGPGASRWEPVYSTVLDDTEGDIQLHSQSVRGVESSHIKIKLTSGWGEHASVHRVSV 399 +D L G +V A+S D HPPENIIDG STFW +TG FPQE +I+ + V+ T+ + NV+ L+IEK+ A ++EPV + TEG +Q ++ S+ G ++H++ + SG+ SVHRV+V Sbjct: 3 IDSTLSSLGAKVVLAASSDENHPPENIIDGNTSTFWMSTGMFPQEFVIRFAEPTTVA--TVAMDSYNVKHLKIEKNTSQNAFQFEPVTEKEFEHTEGHLQSNAISLNGSSATHLRFLIISGYDHFVSVHRVTV 133
BLAST of jgi.p|Trimin1|164627 vs. uniprot
Match: A0A3S2UD91_ORYJA (F5/8 type C domain-containing protein n=4 Tax=Oryzias TaxID=8089 RepID=A0A3S2UD91_ORYJA) HSP 1 Score: 103 bits (256), Expect = 2.160e-25 Identity = 55/133 (41.35%), Postives = 81/133 (60.90%), Query Frame = 1 Query: 1 MDLALEVEGGSLVSASSYDMRHPPENIIDGKDSTFWSTTGGFPQEAIIKLKDTAGVSIQTITTVTTNVRRLEIEKSQGPGASRWEPVYSTVLDDTEGDIQLHSQSVRGVESSHIKIKLTSGWGEHASVHRVSV 399 +D + G +V ASS D RHPPENI+DG STFW +TG FPQE II+ + VS T+ + NV+ L+IEK+ AS++E V + TEG +Q ++ S+ + H++ +TSG+ SVH+VS+ Sbjct: 2 IDSSFSSFGAKVVLASSSDERHPPENIVDGNMSTFWMSTGMFPQEFIIRFPEPTTVSAVTVDSY--NVKNLKIEKNASQSASQFESVTEKEFEYTEGHLQTNAISLNPSSAIHLRFIITSGYDHFVSVHKVSI 132
BLAST of jgi.p|Trimin1|164627 vs. uniprot
Match: A0A2J7ZW71_9CHLO (Heat shock protein beta-11 n=3 Tax=Chlamydomonadales TaxID=3042 RepID=A0A2J7ZW71_9CHLO) HSP 1 Score: 104 bits (259), Expect = 3.950e-25 Identity = 56/134 (41.79%), Postives = 83/134 (61.94%), Query Frame = 1 Query: 4 DLALEVEGGSLVSASSYDMRHPPENIIDGKDSTFWSTTGGFPQEAIIKLKDTAGVSIQTITTVTTNVRRLEIEKSQGPGASRWEPVYSTVLDDTEGDIQLHSQSVRGVESSHIKIKLTSGWGEHASVHRVSVLG 405 D A E GG +V AS D R PPEN++DGKDSTFW TTG FPQE ++KL+ + + + ITT++ NVR+L +EK ++E V+ L + +Q V +++ ++K + G GE A+V+RVSV+G Sbjct: 3 DYAREENGGLIVMASCSDERFPPENMLDGKDSTFWVTTGMFPQEFVLKLE--SAIRVSKITTLSLNVRKLAVEKCDQEKPDQFEKVFEVELANRGDRLQTEVHQVN-IKAKYLKFMVLQGHGEFATVNRVSVVG 133
BLAST of jgi.p|Trimin1|164627 vs. uniprot
Match: A0A836BXG0_9CHLO (Uncharacterized protein n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A836BXG0_9CHLO) HSP 1 Score: 102 bits (255), Expect = 1.080e-24 Identity = 56/134 (41.79%), Postives = 81/134 (60.45%), Query Frame = 1 Query: 4 DLALEVEGGSLVSASSYDMRHPPENIIDGKDSTFWSTTGGFPQEAIIKLKDTAGVSIQTITTVTTNVRRLEIEKSQGPGASRWEPVYSTVLDDTEGDIQLHSQSVRGVESSHIKIKLTSGWGEHASVHRVSVLG 405 D A E GG +V AS D R PPEN++DGKD+TFW TTG FPQE ++KL A + + ITT++ NVR+L +EK ++E V+ L + +Q V + + ++K + G GE A+V+RVSV+G Sbjct: 3 DYAREENGGQVVMASCGDERFPPENMLDGKDNTFWVTTGMFPQEFVLKLD--APIRVSKITTLSLNVRKLAVEKCDQEKPDQFEKVFEVELANRGDRLQTEVHQVN-IRAKYLKFMILQGHGEFATVNRVSVVG 133
BLAST of jgi.p|Trimin1|164627 vs. uniprot
Match: A0A7S0SY50_9CHLO (Hypothetical protein n=1 Tax=Mantoniella antarctica TaxID=81844 RepID=A0A7S0SY50_9CHLO) HSP 1 Score: 100 bits (249), Expect = 2.390e-24 Identity = 53/133 (39.85%), Postives = 79/133 (59.40%), Query Frame = 1 Query: 4 DLALEVEGGSLVSASSYDMRHPPENIIDGKDSTFWSTTGGFPQEAIIKLKDTAGVSIQTITTVTTNVRRLEIEKSQGPGASRWEPVYSTVLDDTEGDIQLHSQSVRGVESSHIKIKLTSGWGEHASVHRVSVL 402 DLA G S++ A+ D RHPPE+I++ D +FW+TTG +PQE +IKL TA V+ + T+T+NV+R +E +++PV+ L D +Q V ++ +K + SGWG+ ASVHRVSV Sbjct: 4 DLATGAAGASVIMATCGDERHPPEHILEPNDGSFWATTGLYPQEFVIKLSGTAQVN--KVRTLTSNVKRFVLEYCDSDRPDKFKPVFEVELADKNQRLQTEVHQVN-CQAKFLKFTIGSGWGDFASVHRVSVF 133 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|164627 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_5279 ID=mRNA_5279|Name=jgi.p|Trimin1|164627|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=459bp|location=Sequence derived from alignment at Contig_32:899199..900033+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGGATTTGGCGTTGGAAGTAGAAGGCGGTAGCCTGGTCTCAGCCTCGTCback to top protein sequence of jgi.p|Trimin1|164627 >Trimin1|164627|e_gw1.32.186.1 ID=Trimin1|164627|e_gw1.32.186.1|Name=jgi.p|Trimin1|164627|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=153bp MDLALEVEGGSLVSASSYDMRHPPENIIDGKDSTFWSTTGGFPQEAIIKLback to top mRNA from alignment at Contig_32:899199..900033+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_5279 ID=mRNA_5279|Name=jgi.p|Trimin1|164627|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=835bp|location=Sequence derived from alignment at Contig_32:899199..900033+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_32:899199..900033+ >mRNA_5279 ID=mRNA_5279|Name=jgi.p|Trimin1|164627|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=459bp|location=Sequence derived from alignment at Contig_32:899199..900033+ (Tribonema minus UTEX_B_3156 )back to top |