mRNA_5279 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|164627
Unique NamemRNA_5279
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|164627 vs. uniprot
Match: A0A836CDI2_9STRA (Galactose-binding domain-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDI2_9STRA)

HSP 1 Score: 305 bits (781), Expect = 5.370e-105
Identity = 152/152 (100.00%), Postives = 152/152 (100.00%), Query Frame = 1
Query:    1 MDLALEVEGGSLVSASSYDMRHPPENIIDGKDSTFWSTTGGFPQEAIIKLKDTAGVSIQTITTVTTNVRRLEIEKSQGPGASRWEPVYSTVLDDTEGDIQLHSQSVRGVESSHIKIKLTSGWGEHASVHRVSVLGKLTGPVSTSGRPAAYRD 456
            MDLALEVEGGSLVSASSYDMRHPPENIIDGKDSTFWSTTGGFPQEAIIKLKDTAGVSIQTITTVTTNVRRLEIEKSQGPGASRWEPVYSTVLDDTEGDIQLHSQSVRGVESSHIKIKLTSGWGEHASVHRVSVLGKLTGPVSTSGRPAAYRD
Sbjct:    1 MDLALEVEGGSLVSASSYDMRHPPENIIDGKDSTFWSTTGGFPQEAIIKLKDTAGVSIQTITTVTTNVRRLEIEKSQGPGASRWEPVYSTVLDDTEGDIQLHSQSVRGVESSHIKIKLTSGWGEHASVHRVSVLGKLTGPVSTSGRPAAYRD 152          
BLAST of jgi.p|Trimin1|164627 vs. uniprot
Match: A0A2D4BPZ1_PYTIN (F5/8 type C domain-containing protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BPZ1_PYTIN)

HSP 1 Score: 122 bits (307), Expect = 4.740e-33
Identity = 59/135 (43.70%), Postives = 88/135 (65.19%), Query Frame = 1
Query:    1 MDLALEVEGGSLVSASSYDMRHPPENIIDGKDSTFWSTTGGFPQEAIIKLKDTAGVSIQTITTVTTNVRRLEIEKSQGPGASRWEPVYSTVLDDTEGDIQLHSQSVRGVESSHIKIKLTSGWGEHASVHRVSVLG 405
            MDL L+ EG  +  A+S+D  HPP+NI+DG  ST W TTG FPQE I++L   A VS   + T +TNV+ + +E   GP   +WE ++ T + +++G +Q+ S+SVR  ++  IK K+ SGW +  ++HRVSV G
Sbjct:    1 MDLTLDEEGAQVTVATSFDPNHPPKNILDGDQSTKWVTTGSFPQEVIVQLATMASVS--RVKTWSTNVKEVAVEVCSGPTPVKWERLFETKIPESDGGLQITSESVRPGDAVFIKFKILSGWNDFVALHRVSVEG 133          
BLAST of jgi.p|Trimin1|164627 vs. uniprot
Match: A0A024UG56_9STRA (XRCC1_N domain-containing protein n=2 Tax=Aphanomyces TaxID=100860 RepID=A0A024UG56_9STRA)

HSP 1 Score: 117 bits (293), Expect = 6.230e-31
Identity = 57/136 (41.91%), Postives = 91/136 (66.91%), Query Frame = 1
Query:    1 MDLALEVEGGSLVSASSYDMRHPPENIIDGKDSTFWSTTGGFPQEAIIKLKDTAGVSIQTITTVTTNVRRLEIEKSQGPGASRWEPVYSTVLDDTEGDIQLHSQSVRGVESSHIKIKLTSGWGEHASVHRVSVLGK 408
            MDLAL+VEG  + SA+S+D + PP N++DG+ ST W+T G +PQE I++L  T+ +S   + T TTN + + +E   GP  ++WE V  T L + +G++Q+ +Q V   ++S +K K+ SG+ +  +VHR+SV GK
Sbjct:    1 MDLALDVEGAQVTSATSFDPKFPPSNVLDGETSTKWATCGLYPQEIIVQLATTSVIS--KVKTWTTNAKHVVVEVCAGPVPTKWEKVADTNLGENDGNLQIETQVVSRDDASFVKFKVLSGYHDFITVHRISVEGK 134          
BLAST of jgi.p|Trimin1|164627 vs. uniprot
Match: A0A3B5QXR2_XIPMA (F5/8 type C domain-containing protein n=8 Tax=Poeciliinae TaxID=586240 RepID=A0A3B5QXR2_XIPMA)

HSP 1 Score: 115 bits (289), Expect = 1.990e-30
Identity = 55/129 (42.64%), Postives = 85/129 (65.89%), Query Frame = 1
Query:   13 LEVEGGSLVSASSYDMRHPPENIIDGKDSTFWSTTGGFPQEAIIKLKDTAGVSIQTITTVTTNVRRLEIEKSQGPGASRWEPVYSTVLDDTEGDIQLHSQSVRGVESSHIKIKLTSGWGEHASVHRVSV 399
            ++  G  +V ASS D  HPPENI DG + TFW +TG FPQE II+  +T  +S  T+T  + N++ L+IE++  P A+ +EPV    ++ TEG +QL+S S++G  ++H++  +T G+    SVHR+SV
Sbjct:    2 IDSSGAHVVLASSSDENHPPENITDGNNKTFWMSTGMFPQEFIIRFPETTNIS--TVTMDSYNIKHLKIERNTSPNAANFEPVTQEEIEQTEGHLQLNSISLKGCRATHLRFIVTEGYDHFVSVHRISV 128          
BLAST of jgi.p|Trimin1|164627 vs. uniprot
Match: A0A7S0USI0_9CHLO (Hypothetical protein n=1 Tax=Polytomella parva TaxID=51329 RepID=A0A7S0USI0_9CHLO)

HSP 1 Score: 104 bits (259), Expect = 1.030e-25
Identity = 58/136 (42.65%), Postives = 86/136 (63.24%), Query Frame = 1
Query:    4 DLALEVEGGSLVSASSYDMRHPPENIIDGKDSTFWSTTGGFPQEAIIKLKDTAGVSIQTITTVTTNVRRLEIEKSQGPGASRWEPVYSTVLDDTEGDIQLHSQSVRGVESSHIKIKLTSGWGEHASVHRVSVLGKL 411
            D A    GG +V AS  D R PP+NI+DGKD TFW TTG FPQ+ IIKL++   V I  ITT++ +++R+ +EKS+   A+ +E V+ T L      +Q     V  +++  ++  + SG GE A+V+RVSV+G+L
Sbjct:    3 DYARAENGGQIVMASCGDERFPPDNILDGKDDTFWMTTGMFPQDFIIKLENL--VKISKITTLSFSIKRICVEKSEQENAASFEKVFETDLTARGDRMQTEVHQVN-IKARFLRFSILSGHGEFATVNRVSVVGEL 135          
BLAST of jgi.p|Trimin1|164627 vs. uniprot
Match: A0A3Q1BXN5_AMPOC (Heat shock protein family B (small) member 11 n=4 Tax=Pomacentridae TaxID=30863 RepID=A0A3Q1BXN5_AMPOC)

HSP 1 Score: 103 bits (257), Expect = 1.570e-25
Identity = 54/133 (40.60%), Postives = 81/133 (60.90%), Query Frame = 1
Query:    1 MDLALEVEGGSLVSASSYDMRHPPENIIDGKDSTFWSTTGGFPQEAIIKLKDTAGVSIQTITTVTTNVRRLEIEKSQGPGASRWEPVYSTVLDDTEGDIQLHSQSVRGVESSHIKIKLTSGWGEHASVHRVSV 399
            +D  L   G  +V A+S D  HPPENIIDG  STFW +TG FPQE +I+  +   V+  T+   + NV+ L+IEK+    A ++EPV     + TEG +Q ++ S+ G  ++H++  + SG+    SVHRV+V
Sbjct:    3 IDSTLSSLGAKVVLAASSDENHPPENIIDGNTSTFWMSTGMFPQEFVIRFAEPTTVA--TVAMDSYNVKHLKIEKNTSQNAFQFEPVTEKEFEHTEGHLQSNAISLNGSSATHLRFLIISGYDHFVSVHRVTV 133          
BLAST of jgi.p|Trimin1|164627 vs. uniprot
Match: A0A3S2UD91_ORYJA (F5/8 type C domain-containing protein n=4 Tax=Oryzias TaxID=8089 RepID=A0A3S2UD91_ORYJA)

HSP 1 Score: 103 bits (256), Expect = 2.160e-25
Identity = 55/133 (41.35%), Postives = 81/133 (60.90%), Query Frame = 1
Query:    1 MDLALEVEGGSLVSASSYDMRHPPENIIDGKDSTFWSTTGGFPQEAIIKLKDTAGVSIQTITTVTTNVRRLEIEKSQGPGASRWEPVYSTVLDDTEGDIQLHSQSVRGVESSHIKIKLTSGWGEHASVHRVSV 399
            +D +    G  +V ASS D RHPPENI+DG  STFW +TG FPQE II+  +   VS  T+ +   NV+ L+IEK+    AS++E V     + TEG +Q ++ S+    + H++  +TSG+    SVH+VS+
Sbjct:    2 IDSSFSSFGAKVVLASSSDERHPPENIVDGNMSTFWMSTGMFPQEFIIRFPEPTTVSAVTVDSY--NVKNLKIEKNASQSASQFESVTEKEFEYTEGHLQTNAISLNPSSAIHLRFIITSGYDHFVSVHKVSI 132          
BLAST of jgi.p|Trimin1|164627 vs. uniprot
Match: A0A2J7ZW71_9CHLO (Heat shock protein beta-11 n=3 Tax=Chlamydomonadales TaxID=3042 RepID=A0A2J7ZW71_9CHLO)

HSP 1 Score: 104 bits (259), Expect = 3.950e-25
Identity = 56/134 (41.79%), Postives = 83/134 (61.94%), Query Frame = 1
Query:    4 DLALEVEGGSLVSASSYDMRHPPENIIDGKDSTFWSTTGGFPQEAIIKLKDTAGVSIQTITTVTTNVRRLEIEKSQGPGASRWEPVYSTVLDDTEGDIQLHSQSVRGVESSHIKIKLTSGWGEHASVHRVSVLG 405
            D A E  GG +V AS  D R PPEN++DGKDSTFW TTG FPQE ++KL+  + + +  ITT++ NVR+L +EK       ++E V+   L +    +Q     V  +++ ++K  +  G GE A+V+RVSV+G
Sbjct:    3 DYAREENGGLIVMASCSDERFPPENMLDGKDSTFWVTTGMFPQEFVLKLE--SAIRVSKITTLSLNVRKLAVEKCDQEKPDQFEKVFEVELANRGDRLQTEVHQVN-IKAKYLKFMVLQGHGEFATVNRVSVVG 133          
BLAST of jgi.p|Trimin1|164627 vs. uniprot
Match: A0A836BXG0_9CHLO (Uncharacterized protein n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A836BXG0_9CHLO)

HSP 1 Score: 102 bits (255), Expect = 1.080e-24
Identity = 56/134 (41.79%), Postives = 81/134 (60.45%), Query Frame = 1
Query:    4 DLALEVEGGSLVSASSYDMRHPPENIIDGKDSTFWSTTGGFPQEAIIKLKDTAGVSIQTITTVTTNVRRLEIEKSQGPGASRWEPVYSTVLDDTEGDIQLHSQSVRGVESSHIKIKLTSGWGEHASVHRVSVLG 405
            D A E  GG +V AS  D R PPEN++DGKD+TFW TTG FPQE ++KL   A + +  ITT++ NVR+L +EK       ++E V+   L +    +Q     V  + + ++K  +  G GE A+V+RVSV+G
Sbjct:    3 DYAREENGGQVVMASCGDERFPPENMLDGKDNTFWVTTGMFPQEFVLKLD--APIRVSKITTLSLNVRKLAVEKCDQEKPDQFEKVFEVELANRGDRLQTEVHQVN-IRAKYLKFMILQGHGEFATVNRVSVVG 133          
BLAST of jgi.p|Trimin1|164627 vs. uniprot
Match: A0A7S0SY50_9CHLO (Hypothetical protein n=1 Tax=Mantoniella antarctica TaxID=81844 RepID=A0A7S0SY50_9CHLO)

HSP 1 Score: 100 bits (249), Expect = 2.390e-24
Identity = 53/133 (39.85%), Postives = 79/133 (59.40%), Query Frame = 1
Query:    4 DLALEVEGGSLVSASSYDMRHPPENIIDGKDSTFWSTTGGFPQEAIIKLKDTAGVSIQTITTVTTNVRRLEIEKSQGPGASRWEPVYSTVLDDTEGDIQLHSQSVRGVESSHIKIKLTSGWGEHASVHRVSVL 402
            DLA    G S++ A+  D RHPPE+I++  D +FW+TTG +PQE +IKL  TA V+   + T+T+NV+R  +E        +++PV+   L D    +Q     V   ++  +K  + SGWG+ ASVHRVSV 
Sbjct:    4 DLATGAAGASVIMATCGDERHPPEHILEPNDGSFWATTGLYPQEFVIKLSGTAQVN--KVRTLTSNVKRFVLEYCDSDRPDKFKPVFEVELADKNQRLQTEVHQVN-CQAKFLKFTIGSGWGDFASVHRVSVF 133          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|164627 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CDI2_9STRA5.370e-105100.00Galactose-binding domain-like protein n=1 Tax=Trib... [more]
A0A2D4BPZ1_PYTIN4.740e-3343.70F5/8 type C domain-containing protein n=1 Tax=Pyth... [more]
A0A024UG56_9STRA6.230e-3141.91XRCC1_N domain-containing protein n=2 Tax=Aphanomy... [more]
A0A3B5QXR2_XIPMA1.990e-3042.64F5/8 type C domain-containing protein n=8 Tax=Poec... [more]
A0A7S0USI0_9CHLO1.030e-2542.65Hypothetical protein n=1 Tax=Polytomella parva Tax... [more]
A0A3Q1BXN5_AMPOC1.570e-2540.60Heat shock protein family B (small) member 11 n=4 ... [more]
A0A3S2UD91_ORYJA2.160e-2541.35F5/8 type C domain-containing protein n=4 Tax=Oryz... [more]
A0A2J7ZW71_9CHLO3.950e-2541.79Heat shock protein beta-11 n=3 Tax=Chlamydomonadal... [more]
A0A836BXG0_9CHLO1.080e-2441.79Uncharacterized protein n=1 Tax=Edaphochlamys deba... [more]
A0A7S0SY50_9CHLO2.390e-2439.85Hypothetical protein n=1 Tax=Mantoniella antarctic... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_32contigContig_32:899199..900033 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|164627|e_gw1.32.186.1
DescriptionIntraflagellar transport protein 25. Source PGD
COG categoryDO
Max annot lvl121069|Pythiales
EggNOG OGsCOG5156@1|root,KOG3437@2759|Eukaryota,1MH0U@121069|Pythiales
Evalue7.27e-37
Seed ortholog42099.EPrPV00000019869
Hectar predicted targeting categoryother localisation
TranscriptId164949
TrackFilteredModels1
ProteinId164627
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|164627gene_5279Tribonema minus UTEX_B_3156 geneContig_32 899199..900033 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_5279_1exon_5279_1Tribonema minus UTEX_B_3156 exonContig_32 899199..899400 +
exon_5279_2exon_5279_2Tribonema minus UTEX_B_3156 exonContig_32 899777..900033 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_5279CDS_5279Tribonema minus UTEX_B_3156 CDSContig_32 899199..899400 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|164627Trimin1|164627|e_gw1.32.186.1Tribonema minus UTEX_B_3156 polypeptideContig_32 899199..900033 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_5279 ID=mRNA_5279|Name=jgi.p|Trimin1|164627|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=459bp|location=Sequence derived from alignment at Contig_32:899199..900033+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGATTTGGCGTTGGAAGTAGAAGGCGGTAGCCTGGTCTCAGCCTCGTC
CTACGACATGCGGCATCCTCCAGAGAACATCATCGATGGCAAAGACAGCA
CTTTCTGGAGCACCACGGGTGGCTTCCCTCAAGAAGCTATCATCAAGCTC
AAGGATACCGCTGGAGTGTCGATACAGACCATTACGACAGTGACCACCAA
TGTCCGCCGCCTGGAAATCGAGAAGTCCCAGGGGCCCGGCGCCTCGCGCT
GGGAGCCCGTCTACTCCACAGTGCTCGACGACACGGAGGGCGACATACAG
CTGCACTCGCAGAGCGTGCGCGGCGTTGAGAGCTCGCACATTAAGATCAA
GCTCACCAGCGGGTGGGGCGAGCACGCGTCGGTGCACCGCGTGTCAGTGC
TCGGCAAGTTGACGGGCCCCGTCAGCACCTCCGGCCGGCCCGCAGCGTAC
CGAGACTAA
back to top

protein sequence of jgi.p|Trimin1|164627

>Trimin1|164627|e_gw1.32.186.1 ID=Trimin1|164627|e_gw1.32.186.1|Name=jgi.p|Trimin1|164627|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=153bp
MDLALEVEGGSLVSASSYDMRHPPENIIDGKDSTFWSTTGGFPQEAIIKL
KDTAGVSIQTITTVTTNVRRLEIEKSQGPGASRWEPVYSTVLDDTEGDIQ
LHSQSVRGVESSHIKIKLTSGWGEHASVHRVSVLGKLTGPVSTSGRPAAY
RD*
back to top

mRNA from alignment at Contig_32:899199..900033+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5279 ID=mRNA_5279|Name=jgi.p|Trimin1|164627|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=835bp|location=Sequence derived from alignment at Contig_32:899199..900033+ (Tribonema minus UTEX_B_3156 )
ATGGATTTGGCGTTGGAAGTAGAAGGCGGTAGCCTGGTCTCAGCCTCGTC CTACGACATGCGGCATCCTCCAGAGAACATCATCGATGGCAAAGACAGCA CTTTCTGGAGCACCACGGGTGGCTTCCCTCAAGAAGCTATCATCAAGCTC AAGGATACCGCTGGAGTGTCGATACAGACCATTACGACAGTGACCACCAA TGGTGAGCTTTTTTGCGATTGAGATCACAGTGCTTGCAGGTGCTTCTCGC GGCCCAATAGTCTTTTTAAAATATGTCGTGCAGTTTGCATGCTGACGATG ACGGCAGATGTGGTCTAAAGGGGCGGGCAATGAACTCTAGTGCAACGAGA GACGCTTTGACCAGGAACTGAGCTTCATTGATGTGTCATGCGCTGCCATC GTGAATATGGCTTGCGTCTATTCTCTTCTACTACGCATTTGTTGAGGTCC TTCGGAATACATCACCAGGGCCTGGGCGTTGCCCAGTCCAGTTGAGCCAG CACTGCCACTAGCACACGCACACAAAGTGGCAACGCGCAGTCATCTTCAA CTCTCGTGACTCCTCCTCTCCGTGCCAGTCCGCCGCCTGGAAATCGAGAA GTCCCAGGGGCCCGGCGCCTCGCGCTGGGAGCCCGTCTACTCCACAGTGC TCGACGACACGGAGGGCGACATACAGCTGCACTCGCAGAGCGTGCGCGGC GTTGAGAGCTCGCACATTAAGATCAAGCTCACCAGCGGGTGGGGCGAGCA CGCGTCGGTGCACCGCGTGTCAGTGCTCGGCAAGTTGACGGGCCCCGTCA GCACCTCCGGCCGGCCCGCAGCGTACCGAGACTAA
back to top

Coding sequence (CDS) from alignment at Contig_32:899199..900033+

>mRNA_5279 ID=mRNA_5279|Name=jgi.p|Trimin1|164627|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=459bp|location=Sequence derived from alignment at Contig_32:899199..900033+ (Tribonema minus UTEX_B_3156 )
ATGGATTTGGCGTTGGAAGTAGAAGGCGGTAGCCTGGTCTCAGCCTCGTC
CTACGACATGCGGCATCCTCCAGAGAACATCATCGATGGCAAAGACAGCA
CTTTCTGGAGCACCACGGGTGGCTTCCCTCAAGAAGCTATCATCAAGCTC
AAGGATACCGCTGGAGTGTCGATACAGACCATTACGACAGTGACCACCAA
TGTCCGCCGCCTGGAAATCGAGAAGTCCCAGGGGCCCGGCGCCTCGCGCT
GGGAGCCCGTCTACTCCACAGTGCTCGACGACACGGAGGGCGACATACAG
CTGCACTCGCAGAGCGTGCGCGGCGTTGAGAGCTCGCACATTAAGATCAA
GCTCACCAGCGGGTGGGGCGAGCACGCGTCGGTGCACCGCGTGTCAGTGC
TCGGCAAGTTGACGGGCCCCGTCAGCACCTCCGGCCGGCCCGCAGCGTAC
CGAGACTAA
back to top