mRNA_5225 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|164642
Unique NamemRNA_5225
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|164642 vs. uniprot
Match: A0A835Z543_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z543_9STRA)

HSP 1 Score: 165 bits (418), Expect = 6.780e-52
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 1 
Query:    1 YVGDSVTDMLAMLSADVGIVIGDSATFRDVAYAFGGGAEGGAWMGVQGENRGKSPGRVYAAASWADIEELLFGTCCQTPLG 243
            YVGDSVTDMLAMLSADVGIVIGDSATFRDVAYAFGGGAEGGAWMGVQGENRGKSPGRVYAAASWADIEELLFGTCCQTPLG
Sbjct:    1 YVGDSVTDMLAMLSADVGIVIGDSATFRDVAYAFGGGAEGGAWMGVQGENRGKSPGRVYAAASWADIEELLFGTCCQTPLG 81
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BLAST of jgi.p|Trimin1|164642 vs. uniprot
Match: W7TA83_9STRA (Transcriptional regulator n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TA83_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 1.150e-11
Identity = 36/74 (48.65%), Postives = 49/74 (66.22%), Query Frame = 1 
Query:    1 YVGDSVTDMLAMLSADVGIVIGDSATFRDVAYAFGGGAEGGAWMGVQGENRGKSPGRVYAAASWADIEELLFGT 222
            ++GDSVTD+LA+++ADVGIV+G+S T R +   FG    G     V+ E RGK+   VYAA  WA+I   L+GT
Sbjct:  406 FIGDSVTDVLALMAADVGIVVGESGTLRRMLRRFGWKIRGLVAFPVKKEERGKASRVVYAAEDWAEIAAFLYGT 479
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BLAST of jgi.p|Trimin1|164642 vs. uniprot
Match: A0A835YSP8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSP8_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 2.280e-11
Identity = 46/87 (52.87%), Postives = 54/87 (62.07%), Query Frame = 1 
Query:    1 YVGDSVTDMLAMLSADVGIVIGDSATFRDVAYAFG------GGAEGGAW------MGVQGENRGKSP-GR-VYAAASWADIEELLFG 219
            Y+GDSVTD+L MLSAD+GIV+G+S TF++VA AFG      G    GA        G  G   G SP GR VY A SW +IE LLFG
Sbjct:  236 YIGDSVTDLLPMLSADIGIVLGNSGTFKEVAAAFGIDIVPLGRVLDGAAPVQIAPAGDDGVGSGTSPLGRTVYHAESWLEIEHLLFG 322
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BLAST of jgi.p|Trimin1|164642 vs. uniprot
Match: A0A4D9CVH8_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CVH8_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 7.650e-11
Identity = 35/73 (47.95%), Postives = 48/73 (65.75%), Query Frame = 1 
Query:    1 YVGDSVTDMLAMLSADVGIVIGDSATFRDVAYAFGGGAEGGAWMGVQGENRGKSPGRVYAAASWADIEELLFG 219
            ++GDSVTD+LA+++ADVGIV+G+S T R +   FG    G     V+ E RGK+   VYAA  WA+I   L+G
Sbjct:  642 FIGDSVTDVLALMAADVGIVVGESRTLRRMLRRFGWKIRGLVAFPVKKEERGKASRVVYAAEDWAEIAAFLYG 714
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BLAST of jgi.p|Trimin1|164642 vs. uniprot
Match: A0A6H5J5C1_9PHAE (TENA_THI-4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J5C1_9PHAE)

HSP 1 Score: 61.2 bits (147), Expect = 4.390e-9
Identity = 39/82 (47.56%), Postives = 49/82 (59.76%), Query Frame = 1 
Query:    1 YVGDSVTDMLAMLSADVGIVIGDSATFRDVAYAFGGGAEGGAWMGVQGENRGKSPG---------RVYAAASWADIEELLFG 219
            YVGDSVTD+LAML ADVGIV+G+S +F  VA AFG      A +    + RG+ P          RVY A+ W +I+  LFG
Sbjct:  525 YVGDSVTDLLAMLDADVGIVVGNSGSFERVARAFGIDILPLASVYEAMDGRGELPTTGAPLGSGQRVYRASQWTEIDVFLFG 606
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BLAST of jgi.p|Trimin1|164642 vs. uniprot
Match: D8LE29_ECTSI (Thiaminase II n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LE29_ECTSI)

HSP 1 Score: 59.7 bits (143), Expect = 1.510e-8
Identity = 38/82 (46.34%), Postives = 48/82 (58.54%), Query Frame = 1 
Query:    1 YVGDSVTDMLAMLSADVGIVIGDSATFRDVAYAFGGGAEGGAWMGVQGENRGKSPGR---------VYAAASWADIEELLFG 219
            YVGDSVTD+LAML ADVGIV+G+S +F  VA AFG      A +    +  G+ P           VY A+ WA+I+  LFG
Sbjct:  428 YVGDSVTDLLAMLDADVGIVVGNSGSFEKVARAFGIDIRPLASVYEAMDGTGELPRTGAPSGSGQCVYRASQWAEIDVFLFG 509
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BLAST of jgi.p|Trimin1|164642 vs. uniprot
Match: A0A5P1F7F7_ASPOF (TENA_THI-4 domain-containing protein n=4 Tax=Asparagus officinalis TaxID=4686 RepID=A0A5P1F7F7_ASPOF)

HSP 1 Score: 52.8 bits (125), Expect = 4.190e-6
Identity = 31/86 (36.05%), Postives = 44/86 (51.16%), Query Frame = 1 
Query:    1 YVGDSVTDMLAMLSADVGIVIGDSATFRDVAYAFGGG------------AEGGAWMGVQGENRGKSPGRVYAAASWADIEELLFGT 222
            Y+G SV D+L +L ADVGIV+G S + R V   FG               EG AW G+         G +Y A++W++I+  + GT
Sbjct:  410 YIGGSVGDLLCLLKADVGIVVGSSGSLRRVGKQFGVSFVPLFPGVVAKQREGSAWRGLS--------GTLYTASNWSEIQAFVLGT 487
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BLAST of jgi.p|Trimin1|164642 vs. uniprot
Match: A0A061SA06_9CHLO (Thiamine phosphate synthase n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061SA06_9CHLO)

HSP 1 Score: 52.4 bits (124), Expect = 5.900e-6
Identity = 35/83 (42.17%), Postives = 42/83 (50.60%), Query Frame = 1 
Query:    1 YVGDSVTDMLAMLSADVGIVIGDSATFRDVA----------YAFGGGAEGGAWMGVQGENRGKSPGRVYAAASWADIEELLFG 219
            YVGDS TD+ A+L ADVGIV+GD+   R  A           A    A GGA          ++ G VY A SW DI +LL G
Sbjct:  305 YVGDSATDLGALLDADVGIVVGDNGMLRPAAEAASASVRPLVALAAAARGGASP--------RAAGTVYRANSWWDIAQLLLG 379
[Close]
BLAST of jgi.p|Trimin1|164642 vs. uniprot
Match: A0A3M6UP90_POCDA (Uncharacterized protein n=1 Tax=Pocillopora damicornis TaxID=46731 RepID=A0A3M6UP90_POCDA)

HSP 1 Score: 52.0 bits (123), Expect = 7.570e-6
Identity = 36/80 (45.00%), Postives = 44/80 (55.00%), Query Frame = 1 
Query:    1 YVGDSVTDMLAMLSADVGIVIGDSATFRDVAYAFG------GGAEGGAWMGVQGENRGKSPGRVYAAASWADIEELLFGT 222
            +VGDS+ D+LAML ADVGIV+G S T R VA AFG         +     G Q     K  G ++ A SW +I   LFGT
Sbjct:  268 FVGDSIGDILAMLKADVGIVVGKSHTLRKVAKAFGIKLLPLQEIQKMTGNGCQEFATPKERGILFEAPSWNEIGFTLFGT 347
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BLAST of jgi.p|Trimin1|164642 vs. uniprot
Match: A0A7J7LPJ5_9MAGN (Uncharacterized protein n=1 Tax=Kingdonia uniflora TaxID=39325 RepID=A0A7J7LPJ5_9MAGN)

HSP 1 Score: 51.6 bits (122), Expect = 1.090e-5
Identity = 33/83 (39.76%), Postives = 45/83 (54.22%), Query Frame = 1 
Query:    1 YVGDSVTDMLAMLSADVGIVIGDSATFRDVAYAFG-------GGAEGGAWMGVQGE--NRGKSPGRVYAAASWADIEELLFGT 222
            Y+GDS+ DML +L AD+GIVIG S++ R +   FG        G        VQGE  N  +  G +Y  +SWA+I   + GT
Sbjct:  540 YIGDSMGDMLCLLEADIGIVIGSSSSLRRLGSEFGVSFVPLFSGLVKKQKEIVQGETFNWNRLSGTLYTVSSWAEIHAFILGT 622
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|164642 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 24
Match NameE-valueIdentityDescription
A0A835Z543_9STRA6.780e-52100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
W7TA83_9STRA1.150e-1148.65Transcriptional regulator n=2 Tax=Nannochloropsis ... [more]
A0A835YSP8_9STRA2.280e-1152.87Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A4D9CVH8_9STRA7.650e-1147.95Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A6H5J5C1_9PHAE4.390e-947.56TENA_THI-4 domain-containing protein n=1 Tax=Ectoc... [more]
D8LE29_ECTSI1.510e-846.34Thiaminase II n=1 Tax=Ectocarpus siliculosus TaxID... [more]
A0A5P1F7F7_ASPOF4.190e-636.05TENA_THI-4 domain-containing protein n=4 Tax=Aspar... [more]
A0A061SA06_9CHLO5.900e-642.17Thiamine phosphate synthase n=1 Tax=Tetraselmis sp... [more]
A0A3M6UP90_POCDA7.570e-645.00Uncharacterized protein n=1 Tax=Pocillopora damico... [more]
A0A7J7LPJ5_9MAGN1.090e-539.76Uncharacterized protein n=1 Tax=Kingdonia uniflora... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_32contigContig_32:552606..552929 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|164642|e_gw1.32.197.1
BRITEko00000,ko00001,ko01000,ko03000
KEGG rclassRC00224,RC00652,RC02832
KEGG ReactionR02133,R09993
KEGG Pathwayko00730,ko01100,map00730,map01100
KEGG koko:K03707
EC3.5.99.2
GOsGO:0003674,GO:0003824,GO:0003993,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005829,GO:0006725,GO:0006766,GO:0006767,GO:0006772,GO:0006790,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009110,GO:0009228,GO:0009987,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0017144,GO:0018130,GO:0019438,GO:0034641,GO:0042131,GO:0042364,GO:0042578,GO:0042723,GO:0042724,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044249,GO:0044271,GO:0044272,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0072527,GO:0072528,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576
DescriptionTENA/THI-4/PQQC family
COG categoryK
Max annot lvl2759|Eukaryota
EggNOG OGsCOG0819@1|root,2QQU0@2759|Eukaryota
Evalue2.48e-09
Seed ortholog2880.D8LE29
Hectar predicted targeting categoryother localisation
TranscriptId164964
TrackFilteredModels1
ProteinId164642
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|164642gene_5225Tribonema minus UTEX_B_3156 geneContig_32 552606..552929 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|164642Trimin1|164642|e_gw1.32.197.1Tribonema minus UTEX_B_3156 polypeptideContig_32 552606..552929 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_5225_2exon_5225_2Tribonema minus UTEX_B_3156 exonContig_32 552606..552746 -
exon_5225_1exon_5225_1Tribonema minus UTEX_B_3156 exonContig_32 552825..552929 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_5225CDS_5225Tribonema minus UTEX_B_3156 CDSContig_32 552825..552929 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_5225 ID=mRNA_5225|Name=jgi.p|Trimin1|164642|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=246bp|location=Sequence derived from alignment at Contig_32:552606..552929- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
TACGTCGGCGACAGCGTGACCGACATGCTCGCCATGCTGAGCGCTGACGT
TGGCATCGTCATAGGCGACAGCGCCACCTTCAGGGACGTCGCGTACGCGT
TCGGCGGGGGGGCTGAGGGGGGAGCGTGGATGGGGGTACAGGGGGAAAAC
AGGGGGAAGTCCCCCGGCCGGGTGTATGCGGCCGCGTCGTGGGCAGATAT
AGAGGAGCTGTTGTTTGGTACGTGCTGTCAGACGCCATTAGGCTAG
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protein sequence of jgi.p|Trimin1|164642

>Trimin1|164642|e_gw1.32.197.1 ID=Trimin1|164642|e_gw1.32.197.1|Name=jgi.p|Trimin1|164642|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=82bp
YVGDSVTDMLAMLSADVGIVIGDSATFRDVAYAFGGGAEGGAWMGVQGEN
RGKSPGRVYAAASWADIEELLFGTCCQTPLG*
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mRNA from alignment at Contig_32:552606..552929-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5225 ID=mRNA_5225|Name=jgi.p|Trimin1|164642|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=324bp|location=Sequence derived from alignment at Contig_32:552606..552929- (Tribonema minus UTEX_B_3156 )
TACGTCGGCGACAGCGTGACCGACATGCTCGCCATGCTGAGCGCTGACGT
TGGCATCGTCATAGGCGACAGCGCCACCTTCAGGGACGTCGCGTACGCGT
TCGGCGTCCAAATCATTCCCCTGGCGCAGTGCCGGGAAGGGCCCCATGGG
GGTCCCGAAGGGGACCCCAGCATAGAGGAAGAGGGGGGGGCTGAGGGGGG
AGCGTGGATGGGGGTACAGGGGGAAAACAGGGGGAAGTCCCCCGGCCGGG
TGTATGCGGCCGCGTCGTGGGCAGATATAGAGGAGCTGTTGTTTGGTACG
TGCTGTCAGACGCCATTAGGCTAG
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Coding sequence (CDS) from alignment at Contig_32:552606..552929-

>mRNA_5225 ID=mRNA_5225|Name=jgi.p|Trimin1|164642|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=246bp|location=Sequence derived from alignment at Contig_32:552606..552929- (Tribonema minus UTEX_B_3156 )
TACGTCGGCGACAGCGTGACCGACATGCTCGCCATGCTGAGCGCTGACGT
TGGCATCGTCATAGGCGACAGCGCCACCTTCAGGGACGTCGCGTACGCGT
TCGGCGGGGGGGCTGAGGGGGGAGCGTGGATGGGGGTACAGGGGGAAAAC
AGGGGGAAGTCCCCCGGCCGGGTGTATGCGGCCGCGTCGTGGGCAGATAT
AGAGGAGCTGTTGTTTGGTACGTGCTGTCAGACGCCATTAGGCTAG
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