mRNA_5222 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|164607
Unique NamemRNA_5222
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|164607 vs. uniprot
Match: A0A835YVZ3_9STRA (30S ribosomal protein S15 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVZ3_9STRA)

HSP 1 Score: 178 bits (451), Expect = 1.110e-56
Identity = 89/89 (100.00%), Postives = 89/89 (100.00%), Query Frame = 1 
Query:    1 MAAWARRPGDSGSTEVQVAILTVRINNLHRHFKKHTKDKHTRRGLEALTVQRRKLLQYMKRVDFPMYRRIVLTLGLQPVRDSKKPKLAR 267
            MAAWARRPGDSGSTEVQVAILTVRINNLHRHFKKHTKDKHTRRGLEALTVQRRKLLQYMKRVDFPMYRRIVLTLGLQPVRDSKKPKLAR
Sbjct:    1 MAAWARRPGDSGSTEVQVAILTVRINNLHRHFKKHTKDKHTRRGLEALTVQRRKLLQYMKRVDFPMYRRIVLTLGLQPVRDSKKPKLAR 89
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BLAST of jgi.p|Trimin1|164607 vs. uniprot
Match: A0A7C1BDR7_9BACT (30S ribosomal protein S15 n=2 Tax=Bacteria candidate phyla TaxID=1783234 RepID=A0A7C1BDR7_9BACT)

HSP 1 Score: 90.1 bits (222), Expect = 9.010e-22
Identity = 44/77 (57.14%), Postives = 54/77 (70.13%), Query Frame = 1 
Query:    1 MAAWARRPGDSGSTEVQVAILTVRINNLHRHFKKHTKDKHTRRGLEALTVQRRKLLQYMKRVDFPMYRRIVLTLGLQ 231
            M  WAR PGDSGS EVQ+AILT RI  L  H K+H KD H+R GL  +  +RR+LL Y++RVDF  YR +V  LGL+
Sbjct:   12 MEQWARHPGDSGSPEVQIAILTARIKQLTEHLKRHKKDVHSRYGLIKMVGKRRRLLNYLRRVDFGRYREVVTKLGLR 88
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BLAST of jgi.p|Trimin1|164607 vs. uniprot
Match: F8AAY3_THEID (30S ribosomal protein S15 n=4 Tax=Thermodesulfatator TaxID=241192 RepID=F8AAY3_THEID)

HSP 1 Score: 87.8 bits (216), Expect = 7.370e-21
Identity = 43/74 (58.11%), Postives = 53/74 (71.62%), Query Frame = 1 
Query:   10 WARRPGDSGSTEVQVAILTVRINNLHRHFKKHTKDKHTRRGLEALTVQRRKLLQYMKRVDFPMYRRIVLTLGLQ 231
            +AR P D+GS EVQ+A+LT RI +L  HFK H KD H+RRGL  L  QRR+LL Y+K+ DF  YR IV  LGL+
Sbjct:   15 FARHPNDTGSPEVQIALLTARIKHLENHFKIHKKDHHSRRGLLKLVGQRRRLLNYLKKTDFERYRNIVKALGLR 88
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BLAST of jgi.p|Trimin1|164607 vs. uniprot
Match: A0A6G7PVF4_9BACT (30S ribosomal protein S15 n=1 Tax=Thermosulfuriphilus ammonigenes TaxID=1936021 RepID=A0A6G7PVF4_9BACT)

HSP 1 Score: 87.0 bits (214), Expect = 1.480e-20
Identity = 43/68 (63.24%), Postives = 52/68 (76.47%), Query Frame = 1 
Query:   28 DSGSTEVQVAILTVRINNLHRHFKKHTKDKHTRRGLEALTVQRRKLLQYMKRVDFPMYRRIVLTLGLQ 231
            D+GS EVQ+A+LT RIN+L  HFK H KD H+RRGL  +  QRR+LLQY+KR DF  YRRIV  LGL+
Sbjct:   21 DTGSPEVQIALLTARINHLTEHFKVHKKDHHSRRGLLKMVGQRRRLLQYLKRTDFDRYRRIVKELGLR 88
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BLAST of jgi.p|Trimin1|164607 vs. uniprot
Match: A0A660ZFV2_9BACT (30S ribosomal protein S15 n=1 Tax=Candidatus Hydrothermae bacterium TaxID=2250085 RepID=A0A660ZFV2_9BACT)

HSP 1 Score: 86.7 bits (213), Expect = 2.050e-20
Identity = 42/74 (56.76%), Postives = 52/74 (70.27%), Query Frame = 1 
Query:   10 WARRPGDSGSTEVQVAILTVRINNLHRHFKKHTKDKHTRRGLEALTVQRRKLLQYMKRVDFPMYRRIVLTLGLQ 231
            WAR PGD+GS EVQ+A+LT RI  L  H K+H KD HTR GL  L  QR+ LL+Y+KR +F  YR +V  LGL+
Sbjct:   14 WARHPGDTGSPEVQIALLTARIKYLTEHLKRHRKDVHTRYGLTKLVGQRKALLRYLKRENFARYREVVKKLGLR 87
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BLAST of jgi.p|Trimin1|164607 vs. uniprot
Match: A0A431HU73_9PROT (30S ribosomal protein S15 n=3 Tax=Proteobacteria TaxID=1224 RepID=A0A431HU73_9PROT)

HSP 1 Score: 86.7 bits (213), Expect = 2.110e-20
Identity = 43/77 (55.84%), Postives = 56/77 (72.73%), Query Frame = 1 
Query:    1 MAAWARRPGDSGSTEVQVAILTVRINNLHRHFKKHTKDKHTRRGLEALTVQRRKLLQYMKRVDFPMYRRIVLTLGLQ 231
            +A + R  GD+GS+EVQVA+LT RIN+L  HFK H KD H+RRGL  L  QRR+LL Y+KR DF  Y +++  LGL+
Sbjct:   12 VAKFQREAGDTGSSEVQVALLTARINDLTGHFKTHMKDHHSRRGLLKLVSQRRRLLDYLKRTDFAKYAQLIKDLGLR 88
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BLAST of jgi.p|Trimin1|164607 vs. uniprot
Match: UPI00036659E5 (30S ribosomal protein S15 n=2 Tax=Leeia TaxID=650341 RepID=UPI00036659E5)

HSP 1 Score: 86.7 bits (213), Expect = 2.110e-20
Identity = 41/74 (55.41%), Postives = 56/74 (75.68%), Query Frame = 1 
Query:   10 WARRPGDSGSTEVQVAILTVRINNLHRHFKKHTKDKHTRRGLEALTVQRRKLLQYMKRVDFPMYRRIVLTLGLQ 231
            + R+ GD+GS+EVQVA+LT RIN+L  HFK+H KD H+RRGL  +  +RRKLL Y+KR D  +YR ++  LGL+
Sbjct:   15 YQRKEGDTGSSEVQVALLTARINDLTGHFKEHKKDHHSRRGLLRMVSRRRKLLDYLKRTDLDLYRSLIERLGLR 88
[Close]
BLAST of jgi.p|Trimin1|164607 vs. uniprot
Match: UPI00123C960C (30S ribosomal protein S15 n=3 Tax=Azonexaceae TaxID=2008795 RepID=UPI00123C960C)

HSP 1 Score: 86.7 bits (213), Expect = 2.110e-20
Identity = 44/77 (57.14%), Postives = 56/77 (72.73%), Query Frame = 1 
Query:    1 MAAWARRPGDSGSTEVQVAILTVRINNLHRHFKKHTKDKHTRRGLEALTVQRRKLLQYMKRVDFPMYRRIVLTLGLQ 231
            +A +A+  GD+GS EVQVA+LT RIN+L  HFK+HTKD H+RRGL  L  QRRKLL Y+K  D   YR ++  LGL+
Sbjct:   12 VAEFAQAKGDTGSPEVQVALLTARINDLQPHFKEHTKDHHSRRGLLRLVSQRRKLLDYLKGKDVERYRTLITKLGLR 88
[Close]
BLAST of jgi.p|Trimin1|164607 vs. uniprot
Match: UPI0018AF7AD3 (30S ribosomal protein S15 n=1 Tax=Microvirga alba TaxID=2791025 RepID=UPI0018AF7AD3)

HSP 1 Score: 86.7 bits (213), Expect = 2.110e-20
Identity = 43/74 (58.11%), Postives = 55/74 (74.32%), Query Frame = 1 
Query:   10 WARRPGDSGSTEVQVAILTVRINNLHRHFKKHTKDKHTRRGLEALTVQRRKLLQYMKRVDFPMYRRIVLTLGLQ 231
            +A++PGD+GS EVQ+AILT RINNL  HFK HTKD H+RRGL  L  QRR LL Y+KR +   Y+ I+  LG++
Sbjct:   15 FAQKPGDTGSPEVQIAILTERINNLTGHFKTHTKDNHSRRGLLKLVSQRRSLLDYVKRKEESRYKAIIEKLGIR 88
[Close]
BLAST of jgi.p|Trimin1|164607 vs. uniprot
Match: A0A7S2FKX4_9STRA (30S ribosomal protein S15 n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FKX4_9STRA)

HSP 1 Score: 87.8 bits (216), Expect = 2.760e-20
Identity = 43/75 (57.33%), Postives = 56/75 (74.67%), Query Frame = 1 
Query:    7 AWARRPGDSGSTEVQVAILTVRINNLHRHFKKHTKDKHTRRGLEALTVQRRKLLQYMKRVDFPMYRRIVLTLGLQ 231
            A+A RPGD+GST VQVA+LTV+I N+  H K+H KD  ++RGL  L  +RRKLL+Y+KR DF  YRR V +L L+
Sbjct:   59 AFASRPGDTGSTPVQVAVLTVKIENVRAHLKQHVKDNPSKRGLVMLVNKRRKLLKYLKRTDFDSYRRTVYSLNLE 133
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|164607 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YVZ3_9STRA1.110e-56100.0030S ribosomal protein S15 n=1 Tax=Tribonema minus ... [more]
A0A7C1BDR7_9BACT9.010e-2257.1430S ribosomal protein S15 n=2 Tax=Bacteria candida... [more]
F8AAY3_THEID7.370e-2158.1130S ribosomal protein S15 n=4 Tax=Thermodesulfatat... [more]
A0A6G7PVF4_9BACT1.480e-2063.2430S ribosomal protein S15 n=1 Tax=Thermosulfuriphi... [more]
A0A660ZFV2_9BACT2.050e-2056.7630S ribosomal protein S15 n=1 Tax=Candidatus Hydro... [more]
A0A431HU73_9PROT2.110e-2055.8430S ribosomal protein S15 n=3 Tax=Proteobacteria T... [more]
UPI00036659E52.110e-2055.4130S ribosomal protein S15 n=2 Tax=Leeia TaxID=6503... [more]
UPI00123C960C2.110e-2057.1430S ribosomal protein S15 n=3 Tax=Azonexaceae TaxI... [more]
UPI0018AF7AD32.110e-2058.1130S ribosomal protein S15 n=1 Tax=Microvirga alba ... [more]
A0A7S2FKX4_9STRA2.760e-2057.3330S ribosomal protein S15 n=1 Tax=Florenciella par... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_32contigContig_32:535736..537403 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|164607|e_gw1.32.178.1
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
KEGG ModuleM00178,M00179
KEGG Pathwayko03010,map03010
KEGG koko:K02956
Preferred namerpsO
DescriptionForms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome
COG categoryJ
Max annot lvl200940|Thermodesulfobacteria
EggNOG OGsCOG0184@1|root,COG0184@2|Bacteria,2GHY4@200940|Thermodesulfobacteria
Evalue8.51e-22
Seed ortholog1123371.ATXH01000025_gene198
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionS15/NS1, RNA-binding
Ec32 orthologEc-14_003560.1
TranscriptId164929
TrackFilteredModels1
ProteinId164607
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|164607gene_5222Tribonema minus UTEX_B_3156 geneContig_32 535736..537403 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_5222_1exon_5222_1Tribonema minus UTEX_B_3156 exonContig_32 535736..535921 +
exon_5222_2exon_5222_2Tribonema minus UTEX_B_3156 exonContig_32 537320..537403 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_5222CDS_5222Tribonema minus UTEX_B_3156 CDSContig_32 535736..535921 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|164607Trimin1|164607|e_gw1.32.178.1Tribonema minus UTEX_B_3156 polypeptideContig_32 535736..537403 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_5222 ID=mRNA_5222|Name=jgi.p|Trimin1|164607|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=270bp|location=Sequence derived from alignment at Contig_32:535736..537403+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGGCGTGGGCGCGGCGGCCGGGCGACTCGGGGTCCACGGAGGTGCA
GGTGGCGATCCTCACCGTGCGCATCAACAACCTCCACAGGCACTTCAAGA
AGCACACCAAGGACAAGCACACGCGGCGCGGGCTCGAGGCGCTCACGGTG
CAGCGCCGCAAGCTCCTGCAGTACATGAAGCGCGTGGACTTCCCCATGTA
CCGGCGCATAGTTCTCACGCTGGGGCTGCAACCCGTGAGGGACAGCAAGA
AGCCCAAGCTGGCGCGGTGA
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protein sequence of jgi.p|Trimin1|164607

>Trimin1|164607|e_gw1.32.178.1 ID=Trimin1|164607|e_gw1.32.178.1|Name=jgi.p|Trimin1|164607|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=90bp
MAAWARRPGDSGSTEVQVAILTVRINNLHRHFKKHTKDKHTRRGLEALTV
QRRKLLQYMKRVDFPMYRRIVLTLGLQPVRDSKKPKLAR*
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mRNA from alignment at Contig_32:535736..537403+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5222 ID=mRNA_5222|Name=jgi.p|Trimin1|164607|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1668bp|location=Sequence derived from alignment at Contig_32:535736..537403+ (Tribonema minus UTEX_B_3156 )
ATGGCGGCGTGGGCGCGGCGGCCGGGCGACTCGGGGTCCACGGAGGTGCA
GGTGGCGATCCTCACCGTGCGCATCAACAACCTCCACAGGCACTTCAAGA
AGCACACCAAGGACAAGCACACGCGGCGCGGGCTCGAGGCGCTCACGGTG
CAGCGCCGCAAGCTCCTGCAGTACATGAAGCGCGTGGTGAGTGCTTGCGC
TCCGGTGCTGTTTCGCAGTGCTCAGCATGGTTGCGTTGTGCGGCGGCGCT
CGTGGTGCAGCGCCGCAAGCTCCTGCAGTACATGAAGCGCGTGGTGAGTG
GGGCTGCGCGCGCCGCGGCGCTCTGTTGGTGTGTCGCACCGCTCAGTAAG
CGTTGCATCGCGGCGGCGCTCGCGGCGCAGCGCCGCAAGCTCCTGCATTA
CATGAAGCACGTGGTGAGTGAGACCGTGCACGCGCGTGTGCGTGAATAGG
CAGCAGCGGCAGCGCTCAGGAGATGTTGTATCGCGGCGGCGGCGGCGGCA
GCGCTGCGCAAGGCGGCAGCAGAACGGCGGGCGCTCGTCGACGACGCTGT
CGCGGCAGCAGTGCGTGCGGCGTACGTGCATCCTCTGCGGCCCGCCGTGC
AGCAGCAGTGCTCAATTTGTGTGTATCAGCGCTCAGCATGGTTGTGGTTT
TTCCGTGGCGGCGCTCGTGGCGCAGCGCCGTGAGCTGCTGCAGCGCACGA
AACGCGTAAGCGTGCGGCAGCGCGGAAATGCGTGGTAATCGCAACTGTGC
GCGCGCGCGTGCGGAGCGGCAGCGACAACGCTCAGTAGATGTGTTGCTGC
GACGGCAGCGCTGTTCAGCGCAGAGTCAGGACGGCGGAGCTTGTTTGGCG
GAGCTGCTGCCTCCGCTAGCGGTCCGGTCCGGCACCGTCCAACCATGCTA
TCAGGTCACGTCGTCTGACGCGCTTGTGGAAATGCAGGTGTTTGAGGCAA
GTGCTGCCTGCCCTGACCCACTCGGAAACCGCATGATCTGATAATGCACA
CGAAGACTTTGCGCCGCAGGCATGTAATGTGCTCACATGGCGCAGTCCCA
CTTGCTTTGTGTTCCTGGCAGCATCGCGGCATGTAACATGGTCACATCCA
CTTGCTTTGTCATCCTGCTCGCTTGTATTCTTTGCGACATCCGCGGTACG
TTACTCGTGGCCAATTGCTGCAGCAGCGGCAACCACGGTTATTGGTGGAA
CGCATTCAGTTTGACGGCTAACCACACCTTGTCACCTAGAGCTCTACGAT
CTTTCGATTCGTTTTCATGCAACATGCTCACATGGCGCCATTCCCGATTG
CTTTGTGGAAACGAATCAAAAGACCGTAGAGCTCTAGGTGACAAAGGATG
GTTAGCCGCAAGTGCCTTCCACCAATATTCGCGGTTGCCGCTGCTGCAGT
CATTGGCCACGAGTCGAGCAGTGCCATCATGTCCACAGTTGTCAAAAGAC
TTCTGCATGCAACCCGTGCTTTGATGTTTTCTCGTGTCACGAGTCAAACA
GTGCCATCATATCCACAGTTTTTGAAAGACTTCTGCATGCAAGCTGTGCT
TTGATGTTTTCTCGTGTCATTTGCGCTGCCGCAGGACTTCCCCATGTACC
GGCGCATAGTTCTCACGCTGGGGCTGCAACCCGTGAGGGACAGCAAGAAG
CCCAAGCTGGCGCGGTGA
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Coding sequence (CDS) from alignment at Contig_32:535736..537403+

>mRNA_5222 ID=mRNA_5222|Name=jgi.p|Trimin1|164607|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=270bp|location=Sequence derived from alignment at Contig_32:535736..537403+ (Tribonema minus UTEX_B_3156 )
ATGGCGGCGTGGGCGCGGCGGCCGGGCGACTCGGGGTCCACGGAGGTGCA
GGTGGCGATCCTCACCGTGCGCATCAACAACCTCCACAGGCACTTCAAGA
AGCACACCAAGGACAAGCACACGCGGCGCGGGCTCGAGGCGCTCACGGTG
CAGCGCCGCAAGCTCCTGCAGTACATGAAGCGCGTGGACTTCCCCATGTA
CCGGCGCATAGTTCTCACGCTGGGGCTGCAACCCGTGAGGGACAGCAAGA
AGCCCAAGCTGGCGCGGTGA
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