mRNA_5200 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|164594 vs. uniprot
Match: A0A836CEN6_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEN6_9STRA) HSP 1 Score: 751 bits (1939), Expect = 3.860e-274 Identity = 373/373 (100.00%), Postives = 373/373 (100.00%), Query Frame = 1 Query: 1 FWRALSSASVDADGCLKLPAGTWFMGNRDFGSAIYIRDCYCNLMEQINKLVAARRVQRVVITGTPGIGKTCYAFYWLWHLRQTGRTVVYQLGPGWYRFCGATAVQGSRKAFLAAGYLDDPAAXXXXXXXXXFGGITLVFVTPRWVRYHEFLKAPAATKRFMPVWSEEELLRCAELLFSGQDLERDVPQARVRELFRRWGGVPRYVLQYAHDDERQGTLTAAIHHCSVGDLHAAIRSTGEGTGTTVVLSDKLVHIHTCGAFTSKRLMWASDYVFDEFCSAQEKSLRLQLAAFLVRYLFWLCAACSISLWCTGCLARVGSSLARSSVVSLVRPSHMRGQFTRPSASPSWLMLKCNGACTTTQQLALALLQRTRSH 1119 FWRALSSASVDADGCLKLPAGTWFMGNRDFGSAIYIRDCYCNLMEQINKLVAARRVQRVVITGTPGIGKTCYAFYWLWHLRQTGRTVVYQLGPGWYRFCGATAVQGSRKAFLAAGYLDDPAAXXXXXXXXXFGGITLVFVTPRWVRYHEFLKAPAATKRFMPVWSEEELLRCAELLFSGQDLERDVPQARVRELFRRWGGVPRYVLQYAHDDERQGTLTAAIHHCSVGDLHAAIRSTGEGTGTTVVLSDKLVHIHTCGAFTSKRLMWASDYVFDEFCSAQEKSLRLQLAAFLVRYLFWLCAACSISLWCTGCLARVGSSLARSSVVSLVRPSHMRGQFTRPSASPSWLMLKCNGACTTTQQLALALLQRTRSH Sbjct: 1 FWRALSSASVDADGCLKLPAGTWFMGNRDFGSAIYIRDCYCNLMEQINKLVAARRVQRVVITGTPGIGKTCYAFYWLWHLRQTGRTVVYQLGPGWYRFCGATAVQGSRKAFLAAGYLDDPAAXXXXXXXXXFGGITLVFVTPRWVRYHEFLKAPAATKRFMPVWSEEELLRCAELLFSGQDLERDVPQARVRELFRRWGGVPRYVLQYAHDDERQGTLTAAIHHCSVGDLHAAIRSTGEGTGTTVVLSDKLVHIHTCGAFTSKRLMWASDYVFDEFCSAQEKSLRLQLAAFLVRYLFWLCAACSISLWCTGCLARVGSSLARSSVVSLVRPSHMRGQFTRPSASPSWLMLKCNGACTTTQQLALALLQRTRSH 373
BLAST of jgi.p|Trimin1|164594 vs. uniprot
Match: A0A835Z6Q5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6Q5_9STRA) HSP 1 Score: 273 bits (698), Expect = 1.630e-83 Identity = 151/301 (50.17%), Postives = 186/301 (61.79%), Query Frame = 1 Query: 1 FWRALSSASVDADGCLKLPAGTWFMGNRDFGSAIYIRDCYCNLMEQINKLVAARRVQRVVITGTPGIGKTCYAFYWLWHLRQTGRTVVYQLGPGWYRFCGATAVQGSR-KAFLAAG--------YLDDPAAXXXXXXXXXFGGITLVFVTPRWVRYHEFLKAPAATKRFMPVWSEEELLRCAELLFSGQDLERDVPQARVRELFRRWGGVPRYVLQYAHDDERQGTLTAAIHHCSVGDLHAAIRSTGEGTGTTVVLSDKLVHIHTCGAFTSKRLMWASDYVFDEFCSAQEKSLRLQLAAFL 876 FWRALS AS D D CL L GTWFMG+ G+ IYIR CY LM+ I +V + +RVVITGTPGIGK+CYA YWLWHLR+ G TVVYQ+G +YRF G AF AG +L DPA G+TLVFV+P RY FLK P AT R+MPVWS+EE+ RC +LLF VPQ+RV++L +WGGVPR+VLQ+A DD +Q L AI C+ L A I + GE G+T LSDK++H+ T F RLMWAS Y FD C AQ ++ + +L AF+ Sbjct: 86 FWRALSRASDDDD-CLALKDGTWFMGDYVRGNRIYIRSCYRELMDTIKAMVTSG-TRRVVITGTPGIGKSCYALYWLWHLRRAGNTVVYQIGADFYRFSGELVQHADTIGAFKNAGGLWHPDVWFLCDPARDHEPYGGCL--GVTLVFVSPSTERYKAFLKEPRATTRYMPVWSQEEVQRCRQLLFDH------VPQSRVQDLLEQWGGVPRFVLQFADDDTQQAKLQQAIRKCATAGLRATILNAGEDAGSTAALSDKVLHMCTAD-FVHVRLMWASQYAFDALCEAQGEASKGELRAFI 375
BLAST of jgi.p|Trimin1|164594 vs. uniprot
Match: A0A836CG71_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CG71_9STRA) HSP 1 Score: 181 bits (460), Expect = 3.800e-47 Identity = 110/296 (37.16%), Postives = 162/296 (54.73%), Query Frame = 1 Query: 1 FWRALSSASVDADGCLKLPAGTWFMGNRDFG-SAIYIRDCYCNLMEQINKLV--AARRVQRVVITGTPGIGKTCYAFYWLWHLRQTGRTVVYQLGPGWYRFCGATAVQGSRKAFLAAGYLDDPAAXXXXXXXXXFG-------GITLVFVTPRWVRYHEFLKAPAATKRFMPVWSEEELLRCAELLFSGQDLERDVPQARVRELFRRWGGVPRYVLQYAHDDERQGTLTAAIHHCSVGDLHAAI-RSTGEGTGTTVVLSDKLVHIHTCGAFTSKRLMWASDYVFDEFCSAQEKSLR 855 FWR L A D G L+L GT F GN++ AIY+R Y +L E++ + + ++++ITG PG GK+ +A YWLW L+ G+TV+YQ +YRF G T +GS + F G+ DDP G GITL F++P+ RY+EFLKAP AT +M W+ EL C + LF +++ VR L+ RWGG PRYVLQYA + +Q L +I + + AA+ S GE +G +SD+++ I +F++ + + S YVF E +++ LR Sbjct: 205 FWRCLVDAREDEHGFLRLTEGTHFPGNKNQRVKAIYVRQWYKDLQEEVLSMTEPGPQHARKILITGRPGTGKSLFALYWLWLLKLAGKTVIYQANKWFYRFSGDTVWRGSERHFADMGFFDDPDCWYLSDPPAPAGTPWLDCEGITLAFMSPKKWRYNEFLKAPLATGVYMTPWTLSELQHCRQHLFPNLSVKQ------VRRLYIRWGGSPRYVLQYARNAFQQNKLQRSIVAATQPNRLAAVFASQGESSGDVDDVSDQVLEIVPT-SFSTCTVRFTSPYVFAEIYKKEQQVLR 493
BLAST of jgi.p|Trimin1|164594 vs. uniprot
Match: A0A836CIP4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIP4_9STRA) HSP 1 Score: 162 bits (409), Expect = 2.210e-41 Identity = 105/291 (36.08%), Postives = 133/291 (45.70%), Query Frame = 1 Query: 1 FWRALSSASVDADGCLKLPAGTWFMGNRDFGSAIYIRDCYCNLMEQINKLVAARRVQRVVITGTPGIGKTCYAFYWLWHLRQTGRTVVYQLGPGWYRFCGATAVQGSRKAFLAAGYLDDPAAXXXXXXXXX----FGGITLVFVTPRWVRYHEFLKAPAATKRFMPVWSEEELLRCAELLFSGQDLERDVPQARVRELFRRWGGVPRYVLQYAHDDERQGTLTAAIHHCSVGDLHAAIRSTGEGTGTTVVLSDKLVHIHTCGAFTSKRLMWASDYVFDEFCSAQEKSLRLQ 861 FW ALS A+ + DG L L GT+FMG+ G+ IY+R CY +L E I +L+A +RVV+TGTPGIGK+ YAFYWLW L Q G+TVVYQ +YRFCG QG+R F AGYL D A F G+T+ F++ RY +FL P AT R MPVW GEGTG T +D ++H T F RLMWAS Y+FD+ C ++ L+ Q Sbjct: 153 FWHALSEATEE-DGWLILVDGTFFMGDPTRGTCIYVRSCYRDLTEHIEQLLAIG-TRRVVVTGTPGIGKSVYAFYWLWRLCQAGKTVVYQSDNDFYRFCGQDVRQGNRSEFFRAGYLQDANAGFLCDPDMELYSCFQGVTIAFMSSCKKRYSKFLNTPRATARCMPVW-------------------------------------------------------------------------GEGTGLTGNAADMVLHSFT-EKFVDARLMWASQYIFDDICKPPDEVLQRQ 367
BLAST of jgi.p|Trimin1|164594 vs. uniprot
Match: A0A835YLJ8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLJ8_9STRA) HSP 1 Score: 152 bits (383), Expect = 2.730e-37 Identity = 99/290 (34.14%), Postives = 144/290 (49.66%), Query Frame = 1 Query: 1 FWRALSSASVDADGCLKLPAGTWFMGNRDFGSAIYIRDCYCNLMEQINKLVAA--RRVQRVVITGTPGIGKTCYAFYWLWHLRQTGRTVVYQLGPGWYRFCG--ATAVQGSRKAFLAAGYLDDPAAXXXXXXXXXFG-GITLVFVTPRWVRYHEFLKAPA---ATKRFMPVWSEEELLRCAELLFSGQDLERDVPQARVRELFRRWGGVPRYVLQYAHDDERQGTLTAAIHHCSVGDLHAAIRSTGEGTGTTVVLSDKLVHIHTCGAFTSKRLMWASDYVFDEFCSAQEK 846 FW +L A +D G LKLP F+G+ +Y+R CY L ++I +L AA R RVVITGTPG GK+ +AFY LW L Q G+TV+ Q+ +Y F G GS +A +L++PA+ G T+ F++P R+ F K A +R+MP+WS E++RC L + R + R+ E WG +PRYVLQYA E+Q L A + + +++ G G + DK+ H+ + L W S+YV E Q + Sbjct: 155 FWLSLPQAQIDKHGILKLPGNMTFLGDPGRKDRLYVRSCYTELYDEIKELNAAGVNRDPRVVITGTPGAGKSQFAFYCLWRLSQEGKTVLLQVANKYYYFSGNIVEVAVGSPRA----SWLENPASPEGTALWQEDSIGTTVCFMSPNIKRFQGFEKGGGDRNAARRYMPIWSVNEIIRCYARLPHFRRHSRRLVLQRLAE----WGPLPRYVLQYADKPEQQSKLADACRDVARSGVLEMLQAAGPKPGNKRFV-DKVFHMRVDSDYRQYVLQWTSEYVEFEVTQGQRR 435
BLAST of jgi.p|Trimin1|164594 vs. uniprot
Match: A0A8A1V4H4_PHYCP (CRN125_11 protein (Fragment) n=1 Tax=Phytophthora capsici TaxID=4784 RepID=A0A8A1V4H4_PHYCP) HSP 1 Score: 146 bits (368), Expect = 6.360e-36 Identity = 98/281 (34.88%), Postives = 140/281 (49.82%), Query Frame = 1 Query: 1 FWRALSSASVD--ADGCLKLPAGTWFMGNRDFGSAIYIRDCYCNLMEQINKLV--AARRVQRVVITGTPGIGKTCYAFYWLWHLRQTGRTVVYQLGPGWYRFCGAT--AVQGSRKAFLAAGYLDDPAAXXXXXXXXXFGGITLVFVTPRWVRYHEFLKAPAATKRFMPVWSEEELLRCAELLFSGQDLERDVPQARVRELFRRWGGVPRYVLQYAHDDERQGTLTAAIHHCSVGDLHAAIRSTGEGTGTTVVLSDKLVHIHTCGAFTSKRLMWASDYVFDE 825 FWRAL + AD L LP GT+ +GN GS IYIR CY L + K++ A +VI G PGIGKT + + LW L ++G TVVY+ RF + VQGS+K F+ + T++ +P+ ++EF K + +MPVWS +E+L C EL++S D+P++ V++ FRRWGG+PRYVL YA RQ L A+ + ++ L A E S L+H F + +AS YV +E Sbjct: 148 FWRALQGDRTEFKADAVLTLPEGTFLLGNPMLGSRIYIRHCYPRLWQVCLKMINDEAMNTPHLVILGNPGIGKTYFGYVILWLLARSGNTVVYESRVCHRRFLFSQDMVVQGSKKDFIEILEQTTTYYVVDGVEPRYYSAKTILLTSPQREVWYEFNKDDCRSC-YMPVWSRDEVLTCRELMYS------DIPESVVQDCFRRWGGIPRYVLHYATAGGRQQWLEKAMENITLDSLMDACGDLYENPSEE---SLHLLHYRVTKEFNTDYFDFASQYVLEE 418
BLAST of jgi.p|Trimin1|164594 vs. uniprot
Match: M4C1F8_HYAAE (RxLR effector candidate protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4C1F8_HYAAE) HSP 1 Score: 141 bits (356), Expect = 1.480e-34 Identity = 96/284 (33.80%), Postives = 139/284 (48.94%), Query Frame = 1 Query: 1 FWRALSSAS--VDADGCLKLPAGTWFMGNRDFGSAIYIRDCYCNL----MEQINKLVAARRVQRVVITGTPGIGKTCYAFYWLWHLRQTGRTVVYQLGPG-WYR--FCGATAVQGSRKAFLAAGYLDDPAAXXXXXXXXXFGGITLVFVTPRWVRYHEFLKAPAATKRFMPVWSEEELLRCAELLFSGQDLERDVPQARVRELFRRWGGVPRYVLQYAHDDERQGTLTAAIHHCSVGDLHAAIRSTGEGTGTTVVLSDKLVHIHTCGAFTSKRLMWASDYVFDE 825 FW++ S V AD + LP GT+ +G + GS IYIR CY L ++ +N A VVI GTPGIGKT + + L+HL TG TVVY+ W R F G VQG F + T++ +PR +H++ + A FMPVW+EEE+ RC +LL+S D P V + F +WG V RYVL+YA D +Q L AI DL + ++ E +G +S +L+H F + +A++Y+ ++ Sbjct: 147 FWKSFREMSPKVVADAVIALPEGTFILGVQKLGSVIYIRHCYSQLWKLCLDTLNHAAIANHC--VVILGTPGIGKTHFGYLVLFHLAHTGATVVYETREDKWTRTLFSGDKVVQGLWTDFNQVHAQPETFYVVDGVEPSRCDAKTILVTSPRKRIWHKYSQRNGAKVLFMPVWTEEEIYRCRDLLYS------DTPVETVEKRFCKWGDVARYVLRYAKDKAKQKVLKEAIGQA---DLKVIVSASVESSGVECDVSHRLLHFRVTRDFGYEGFDFATNYIAEK 419
BLAST of jgi.p|Trimin1|164594 vs. uniprot
Match: M4C004_HYAAE (RxLR effector candidate protein n=3 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4C004_HYAAE) HSP 1 Score: 142 bits (357), Expect = 1.200e-33 Identity = 91/298 (30.54%), Postives = 152/298 (51.01%), Query Frame = 1 Query: 1 FWRAL----SSASVDADGCLKLPAGTWFMGNRDFGSAIYIRDCYCNLMEQINKLVAARRVQRVVITGTPGIGKTCYAFYWLWHLRQTGRTVVYQLGPGWYRF--CGATAVQGSRKAFLAAGYLDDPAAXXXXXXXXXFGGITLVFVTPRWVRYHEFLKAPAATKRFMPVWSEEELLRCAELLFSGQDLERDVPQARVRELFRRWGGVPRYVLQYAHDDERQGTLTAAIHHCSVGDLHAAIRSTGEGTGTTVVLSDKLVHIHTCGAFTSKRLMWASDYVFDEFCSAQEKSLRLQLAAFL 876 FW+A + + A + LP T+ +G GS +Y+R CY L + ++ +VI G PGIGKT + ++ L HL ++ TVVY+ G RF CG TAV GS F L + + T++ +PR + ++ K + +MPVW+E+E+L+C +L++S D P RV E +R+WGG+ RYVL++A + +Q L AI+ + L A + S G+ + +++S +++HI F ++ ++AS +V + + R +L AFL Sbjct: 147 FWKAFQKDYTKFDLVAGKLIALPEDTFILGQEKCGSRMYVRHCYPQLWNVCLGALNRPGIRNLVILGNPGIGKTVFGYFILLHLARSNETVVYEPARGEDRFLFCGETAVAGSNTDFKDILNLSETYYVVDAIAPINYAAKTILLTSPRPKVWKDYYKDDCE-RFYMPVWTEQEILQCRDLMYS------DRPLGRVMECYRKWGGIARYVLRFAMVERQQSLLGEAINEVN---LEAIVNSNGQMSAKDIMISHRVLHILVEDDFNNEGYVFASRHVLNMVYNKVFAENRGRLLAFL 434
BLAST of jgi.p|Trimin1|164594 vs. uniprot
Match: G5A7B9_PHYSP (Crinkler domain-containing protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G5A7B9_PHYSP) HSP 1 Score: 140 bits (352), Expect = 5.650e-33 Identity = 97/278 (34.89%), Postives = 137/278 (49.28%), Query Frame = 1 Query: 1 FWRALSS--ASVDADGCLKLPAGTWFMGNRDFGSAIYIRDCYCNLMEQINKLV--AARRVQRVVITGTPGIGKTCYAFYWLWHLRQTGRTVVYQLGPGWYRFCGATAV--QGSRKAFLAAGYLDDPAAXXXXXXXXXFGGITLVFVTPRWVRYHEFLKAPAATKRFMPVWSEEELLRCAELLFSGQDLERDVPQARVRELFRRWGGVPRYVLQYAHDDERQGTLTAAIHHCSVGDLHAAIRSTGEGTGTTVVLSDKLVHIHTCGAFTSKRLMWASDYV 816 FW+AL S V A +KLP GT+ +G+ GS IYIR CY L + + + + +VI G PGIGKT + F L L G TVVY+ G RF + V QGS++ F F T++ PR ++EF K + +MPVWS EE+L+C EL+++ D P A V++ FRRWGG RYVL+YA D +Q L AI DL + + G+ +S +L+H F ++ ++AS YV Sbjct: 152 FWKALVSDRTEVKAGALIKLPEGTYLLGDELLGSRIYIRSCYPKLWKLCQQRIHDEVEKTPHLVILGNPGIGKTFFGFVILLLLAHAGATVVYENGILKRRFLFSRDVVAQGSQEDFAPILDRSTTYYIVDAVKPTYFKAKTILVTPPRRSIWYEFNKTNCQSC-YMPVWSIEEILQCRELMYA------DTPVAVVQDCFRRWGGTARYVLRYAQVDNQQALLGTAIDSA---DLDLLVNACGQVEAKDAEVSHRLLHYRVNKKFDNEYFVFASQYV 419
BLAST of jgi.p|Trimin1|164594 vs. uniprot
Match: V9DU73_PHYPR (Crinkler domain-containing protein (Fragment) n=5 Tax=Phytophthora parasitica TaxID=4792 RepID=V9DU73_PHYPR) HSP 1 Score: 137 bits (344), Expect = 7.040e-32 Identity = 95/280 (33.93%), Postives = 142/280 (50.71%), Query Frame = 1 Query: 1 FWRAL--SSASVDADGCLKLPAGTWFMGNRDFGSAIYIRDCYCNLMEQINKLVAARRVQ--RVVITGTPGIGKTCYAFYWLWHLRQTGRTVVYQLGPGWYRFCGATAV--QGSRKAFLAAGYLDDPAAXXXXXXXXX--FGGITLVFVTPRWVRYHEFLKAPAATKRFMPVWSEEELLRCAELLFSGQDLERDVPQARVRELFRRWGGVPRYVLQYAHDDERQGTLTAAIHHCSVGDLHAAIRSTGEGTGTTVVLSDKLVHIHTCGAFTSKRLMWASDYV 816 FW+A S V AD +KLP GT+ +G+ GS IYIR CY L E + + + +VI G PGIGKT + F L L + G TVVY+ G RF V QGS++ F+ LD P + T++ +PR ++ F K + +MPVWS +E+L+C EL++S P+A V++ FRRWGG+ RYVL++A +Q L A+ + DL + + G+ +S +L+H F ++ ++AS YV Sbjct: 153 FWQAFLDDSTDVKADALVKLPEGTYILGDSSLGSRIYIRHCYPALWELCLERIHDEKTNTPHLVILGNPGIGKTFFGFVILLLLARAGETVVYESGGLKKRFLFTHTVVAQGSQEDFVRI--LDQPTTYYIVDAVKPAYYPAKTILLTSPRRSIWYAFNKTNCQSC-YMPVWSLKEILQCRELIYST------TPEAVVQDCFRRWGGIARYVLRFAQVGNQQVLLEKAM---DIVDLDWLVNACGQLDANDAQVSRRLLHYRVSRTFDNEYFVFASKYV 420 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|164594 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_5200 ID=mRNA_5200|Name=jgi.p|Trimin1|164594|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1122bp|location=Sequence derived from alignment at Contig_32:392069..394221- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. TTCTGGCGCGCCCTCTCAAGCGCCAGCGTGGACGCTGACGGCTGCCTGAAback to top protein sequence of jgi.p|Trimin1|164594 >Trimin1|164594|e_gw1.32.200.1 ID=Trimin1|164594|e_gw1.32.200.1|Name=jgi.p|Trimin1|164594|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=374bp FWRALSSASVDADGCLKLPAGTWFMGNRDFGSAIYIRDCYCNLMEQINKLback to top mRNA from alignment at Contig_32:392069..394221- Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_5200 ID=mRNA_5200|Name=jgi.p|Trimin1|164594|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2153bp|location=Sequence derived from alignment at Contig_32:392069..394221- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_32:392069..394221- >mRNA_5200 ID=mRNA_5200|Name=jgi.p|Trimin1|164594|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1122bp|location=Sequence derived from alignment at Contig_32:392069..394221- (Tribonema minus UTEX_B_3156 )back to top |