mRNA_5200 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|164594
Unique NamemRNA_5200
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|164594 vs. uniprot
Match: A0A836CEN6_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEN6_9STRA)

HSP 1 Score: 751 bits (1939), Expect = 3.860e-274
Identity = 373/373 (100.00%), Postives = 373/373 (100.00%), Query Frame = 1
Query:    1 FWRALSSASVDADGCLKLPAGTWFMGNRDFGSAIYIRDCYCNLMEQINKLVAARRVQRVVITGTPGIGKTCYAFYWLWHLRQTGRTVVYQLGPGWYRFCGATAVQGSRKAFLAAGYLDDPAAXXXXXXXXXFGGITLVFVTPRWVRYHEFLKAPAATKRFMPVWSEEELLRCAELLFSGQDLERDVPQARVRELFRRWGGVPRYVLQYAHDDERQGTLTAAIHHCSVGDLHAAIRSTGEGTGTTVVLSDKLVHIHTCGAFTSKRLMWASDYVFDEFCSAQEKSLRLQLAAFLVRYLFWLCAACSISLWCTGCLARVGSSLARSSVVSLVRPSHMRGQFTRPSASPSWLMLKCNGACTTTQQLALALLQRTRSH 1119
            FWRALSSASVDADGCLKLPAGTWFMGNRDFGSAIYIRDCYCNLMEQINKLVAARRVQRVVITGTPGIGKTCYAFYWLWHLRQTGRTVVYQLGPGWYRFCGATAVQGSRKAFLAAGYLDDPAAXXXXXXXXXFGGITLVFVTPRWVRYHEFLKAPAATKRFMPVWSEEELLRCAELLFSGQDLERDVPQARVRELFRRWGGVPRYVLQYAHDDERQGTLTAAIHHCSVGDLHAAIRSTGEGTGTTVVLSDKLVHIHTCGAFTSKRLMWASDYVFDEFCSAQEKSLRLQLAAFLVRYLFWLCAACSISLWCTGCLARVGSSLARSSVVSLVRPSHMRGQFTRPSASPSWLMLKCNGACTTTQQLALALLQRTRSH
Sbjct:    1 FWRALSSASVDADGCLKLPAGTWFMGNRDFGSAIYIRDCYCNLMEQINKLVAARRVQRVVITGTPGIGKTCYAFYWLWHLRQTGRTVVYQLGPGWYRFCGATAVQGSRKAFLAAGYLDDPAAXXXXXXXXXFGGITLVFVTPRWVRYHEFLKAPAATKRFMPVWSEEELLRCAELLFSGQDLERDVPQARVRELFRRWGGVPRYVLQYAHDDERQGTLTAAIHHCSVGDLHAAIRSTGEGTGTTVVLSDKLVHIHTCGAFTSKRLMWASDYVFDEFCSAQEKSLRLQLAAFLVRYLFWLCAACSISLWCTGCLARVGSSLARSSVVSLVRPSHMRGQFTRPSASPSWLMLKCNGACTTTQQLALALLQRTRSH 373          
BLAST of jgi.p|Trimin1|164594 vs. uniprot
Match: A0A835Z6Q5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6Q5_9STRA)

HSP 1 Score: 273 bits (698), Expect = 1.630e-83
Identity = 151/301 (50.17%), Postives = 186/301 (61.79%), Query Frame = 1
Query:    1 FWRALSSASVDADGCLKLPAGTWFMGNRDFGSAIYIRDCYCNLMEQINKLVAARRVQRVVITGTPGIGKTCYAFYWLWHLRQTGRTVVYQLGPGWYRFCGATAVQGSR-KAFLAAG--------YLDDPAAXXXXXXXXXFGGITLVFVTPRWVRYHEFLKAPAATKRFMPVWSEEELLRCAELLFSGQDLERDVPQARVRELFRRWGGVPRYVLQYAHDDERQGTLTAAIHHCSVGDLHAAIRSTGEGTGTTVVLSDKLVHIHTCGAFTSKRLMWASDYVFDEFCSAQEKSLRLQLAAFL 876
            FWRALS AS D D CL L  GTWFMG+   G+ IYIR CY  LM+ I  +V +   +RVVITGTPGIGK+CYA YWLWHLR+ G TVVYQ+G  +YRF G          AF  AG        +L DPA            G+TLVFV+P   RY  FLK P AT R+MPVWS+EE+ RC +LLF        VPQ+RV++L  +WGGVPR+VLQ+A DD +Q  L  AI  C+   L A I + GE  G+T  LSDK++H+ T   F   RLMWAS Y FD  C AQ ++ + +L AF+
Sbjct:   86 FWRALSRASDDDD-CLALKDGTWFMGDYVRGNRIYIRSCYRELMDTIKAMVTSG-TRRVVITGTPGIGKSCYALYWLWHLRRAGNTVVYQIGADFYRFSGELVQHADTIGAFKNAGGLWHPDVWFLCDPARDHEPYGGCL--GVTLVFVSPSTERYKAFLKEPRATTRYMPVWSQEEVQRCRQLLFDH------VPQSRVQDLLEQWGGVPRFVLQFADDDTQQAKLQQAIRKCATAGLRATILNAGEDAGSTAALSDKVLHMCTAD-FVHVRLMWASQYAFDALCEAQGEASKGELRAFI 375          
BLAST of jgi.p|Trimin1|164594 vs. uniprot
Match: A0A836CG71_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CG71_9STRA)

HSP 1 Score: 181 bits (460), Expect = 3.800e-47
Identity = 110/296 (37.16%), Postives = 162/296 (54.73%), Query Frame = 1
Query:    1 FWRALSSASVDADGCLKLPAGTWFMGNRDFG-SAIYIRDCYCNLMEQINKLV--AARRVQRVVITGTPGIGKTCYAFYWLWHLRQTGRTVVYQLGPGWYRFCGATAVQGSRKAFLAAGYLDDPAAXXXXXXXXXFG-------GITLVFVTPRWVRYHEFLKAPAATKRFMPVWSEEELLRCAELLFSGQDLERDVPQARVRELFRRWGGVPRYVLQYAHDDERQGTLTAAIHHCSVGDLHAAI-RSTGEGTGTTVVLSDKLVHIHTCGAFTSKRLMWASDYVFDEFCSAQEKSLR 855
            FWR L  A  D  G L+L  GT F GN++    AIY+R  Y +L E++  +     +  ++++ITG PG GK+ +A YWLW L+  G+TV+YQ    +YRF G T  +GS + F   G+ DDP            G       GITL F++P+  RY+EFLKAP AT  +M  W+  EL  C + LF    +++      VR L+ RWGG PRYVLQYA +  +Q  L  +I   +  +  AA+  S GE +G    +SD+++ I    +F++  + + S YVF E    +++ LR
Sbjct:  205 FWRCLVDAREDEHGFLRLTEGTHFPGNKNQRVKAIYVRQWYKDLQEEVLSMTEPGPQHARKILITGRPGTGKSLFALYWLWLLKLAGKTVIYQANKWFYRFSGDTVWRGSERHFADMGFFDDPDCWYLSDPPAPAGTPWLDCEGITLAFMSPKKWRYNEFLKAPLATGVYMTPWTLSELQHCRQHLFPNLSVKQ------VRRLYIRWGGSPRYVLQYARNAFQQNKLQRSIVAATQPNRLAAVFASQGESSGDVDDVSDQVLEIVPT-SFSTCTVRFTSPYVFAEIYKKEQQVLR 493          
BLAST of jgi.p|Trimin1|164594 vs. uniprot
Match: A0A836CIP4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIP4_9STRA)

HSP 1 Score: 162 bits (409), Expect = 2.210e-41
Identity = 105/291 (36.08%), Postives = 133/291 (45.70%), Query Frame = 1
Query:    1 FWRALSSASVDADGCLKLPAGTWFMGNRDFGSAIYIRDCYCNLMEQINKLVAARRVQRVVITGTPGIGKTCYAFYWLWHLRQTGRTVVYQLGPGWYRFCGATAVQGSRKAFLAAGYLDDPAAXXXXXXXXX----FGGITLVFVTPRWVRYHEFLKAPAATKRFMPVWSEEELLRCAELLFSGQDLERDVPQARVRELFRRWGGVPRYVLQYAHDDERQGTLTAAIHHCSVGDLHAAIRSTGEGTGTTVVLSDKLVHIHTCGAFTSKRLMWASDYVFDEFCSAQEKSLRLQ 861
            FW ALS A+ + DG L L  GT+FMG+   G+ IY+R CY +L E I +L+A    +RVV+TGTPGIGK+ YAFYWLW L Q G+TVVYQ    +YRFCG    QG+R  F  AGYL D  A             F G+T+ F++    RY +FL  P AT R MPVW                                                                         GEGTG T   +D ++H  T   F   RLMWAS Y+FD+ C   ++ L+ Q
Sbjct:  153 FWHALSEATEE-DGWLILVDGTFFMGDPTRGTCIYVRSCYRDLTEHIEQLLAIG-TRRVVVTGTPGIGKSVYAFYWLWRLCQAGKTVVYQSDNDFYRFCGQDVRQGNRSEFFRAGYLQDANAGFLCDPDMELYSCFQGVTIAFMSSCKKRYSKFLNTPRATARCMPVW-------------------------------------------------------------------------GEGTGLTGNAADMVLHSFT-EKFVDARLMWASQYIFDDICKPPDEVLQRQ 367          
BLAST of jgi.p|Trimin1|164594 vs. uniprot
Match: A0A835YLJ8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLJ8_9STRA)

HSP 1 Score: 152 bits (383), Expect = 2.730e-37
Identity = 99/290 (34.14%), Postives = 144/290 (49.66%), Query Frame = 1
Query:    1 FWRALSSASVDADGCLKLPAGTWFMGNRDFGSAIYIRDCYCNLMEQINKLVAA--RRVQRVVITGTPGIGKTCYAFYWLWHLRQTGRTVVYQLGPGWYRFCG--ATAVQGSRKAFLAAGYLDDPAAXXXXXXXXXFG-GITLVFVTPRWVRYHEFLKAPA---ATKRFMPVWSEEELLRCAELLFSGQDLERDVPQARVRELFRRWGGVPRYVLQYAHDDERQGTLTAAIHHCSVGDLHAAIRSTGEGTGTTVVLSDKLVHIHTCGAFTSKRLMWASDYVFDEFCSAQEK 846
            FW +L  A +D  G LKLP    F+G+      +Y+R CY  L ++I +L AA   R  RVVITGTPG GK+ +AFY LW L Q G+TV+ Q+   +Y F G       GS +A     +L++PA+            G T+ F++P   R+  F K      A +R+MP+WS  E++RC   L   +   R +   R+ E    WG +PRYVLQYA   E+Q  L  A    +   +   +++ G   G    + DK+ H+     +    L W S+YV  E    Q +
Sbjct:  155 FWLSLPQAQIDKHGILKLPGNMTFLGDPGRKDRLYVRSCYTELYDEIKELNAAGVNRDPRVVITGTPGAGKSQFAFYCLWRLSQEGKTVLLQVANKYYYFSGNIVEVAVGSPRA----SWLENPASPEGTALWQEDSIGTTVCFMSPNIKRFQGFEKGGGDRNAARRYMPIWSVNEIIRCYARLPHFRRHSRRLVLQRLAE----WGPLPRYVLQYADKPEQQSKLADACRDVARSGVLEMLQAAGPKPGNKRFV-DKVFHMRVDSDYRQYVLQWTSEYVEFEVTQGQRR 435          
BLAST of jgi.p|Trimin1|164594 vs. uniprot
Match: A0A8A1V4H4_PHYCP (CRN125_11 protein (Fragment) n=1 Tax=Phytophthora capsici TaxID=4784 RepID=A0A8A1V4H4_PHYCP)

HSP 1 Score: 146 bits (368), Expect = 6.360e-36
Identity = 98/281 (34.88%), Postives = 140/281 (49.82%), Query Frame = 1
Query:    1 FWRALSSASVD--ADGCLKLPAGTWFMGNRDFGSAIYIRDCYCNLMEQINKLV--AARRVQRVVITGTPGIGKTCYAFYWLWHLRQTGRTVVYQLGPGWYRFCGAT--AVQGSRKAFLAAGYLDDPAAXXXXXXXXXFGGITLVFVTPRWVRYHEFLKAPAATKRFMPVWSEEELLRCAELLFSGQDLERDVPQARVRELFRRWGGVPRYVLQYAHDDERQGTLTAAIHHCSVGDLHAAIRSTGEGTGTTVVLSDKLVHIHTCGAFTSKRLMWASDYVFDE 825
            FWRAL     +  AD  L LP GT+ +GN   GS IYIR CY  L +   K++   A     +VI G PGIGKT + +  LW L ++G TVVY+      RF  +    VQGS+K F+                   +   T++  +P+   ++EF K    +  +MPVWS +E+L C EL++S      D+P++ V++ FRRWGG+PRYVL YA    RQ  L  A+ + ++  L  A     E        S  L+H      F +    +AS YV +E
Sbjct:  148 FWRALQGDRTEFKADAVLTLPEGTFLLGNPMLGSRIYIRHCYPRLWQVCLKMINDEAMNTPHLVILGNPGIGKTYFGYVILWLLARSGNTVVYESRVCHRRFLFSQDMVVQGSKKDFIEILEQTTTYYVVDGVEPRYYSAKTILLTSPQREVWYEFNKDDCRSC-YMPVWSRDEVLTCRELMYS------DIPESVVQDCFRRWGGIPRYVLHYATAGGRQQWLEKAMENITLDSLMDACGDLYENPSEE---SLHLLHYRVTKEFNTDYFDFASQYVLEE 418          
BLAST of jgi.p|Trimin1|164594 vs. uniprot
Match: M4C1F8_HYAAE (RxLR effector candidate protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4C1F8_HYAAE)

HSP 1 Score: 141 bits (356), Expect = 1.480e-34
Identity = 96/284 (33.80%), Postives = 139/284 (48.94%), Query Frame = 1
Query:    1 FWRALSSAS--VDADGCLKLPAGTWFMGNRDFGSAIYIRDCYCNL----MEQINKLVAARRVQRVVITGTPGIGKTCYAFYWLWHLRQTGRTVVYQLGPG-WYR--FCGATAVQGSRKAFLAAGYLDDPAAXXXXXXXXXFGGITLVFVTPRWVRYHEFLKAPAATKRFMPVWSEEELLRCAELLFSGQDLERDVPQARVRELFRRWGGVPRYVLQYAHDDERQGTLTAAIHHCSVGDLHAAIRSTGEGTGTTVVLSDKLVHIHTCGAFTSKRLMWASDYVFDE 825
            FW++    S  V AD  + LP GT+ +G +  GS IYIR CY  L    ++ +N    A     VVI GTPGIGKT + +  L+HL  TG TVVY+     W R  F G   VQG    F       +                T++  +PR   +H++ +   A   FMPVW+EEE+ RC +LL+S      D P   V + F +WG V RYVL+YA D  +Q  L  AI      DL   + ++ E +G    +S +L+H      F  +   +A++Y+ ++
Sbjct:  147 FWKSFREMSPKVVADAVIALPEGTFILGVQKLGSVIYIRHCYSQLWKLCLDTLNHAAIANHC--VVILGTPGIGKTHFGYLVLFHLAHTGATVVYETREDKWTRTLFSGDKVVQGLWTDFNQVHAQPETFYVVDGVEPSRCDAKTILVTSPRKRIWHKYSQRNGAKVLFMPVWTEEEIYRCRDLLYS------DTPVETVEKRFCKWGDVARYVLRYAKDKAKQKVLKEAIGQA---DLKVIVSASVESSGVECDVSHRLLHFRVTRDFGYEGFDFATNYIAEK 419          
BLAST of jgi.p|Trimin1|164594 vs. uniprot
Match: M4C004_HYAAE (RxLR effector candidate protein n=3 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4C004_HYAAE)

HSP 1 Score: 142 bits (357), Expect = 1.200e-33
Identity = 91/298 (30.54%), Postives = 152/298 (51.01%), Query Frame = 1
Query:    1 FWRAL----SSASVDADGCLKLPAGTWFMGNRDFGSAIYIRDCYCNLMEQINKLVAARRVQRVVITGTPGIGKTCYAFYWLWHLRQTGRTVVYQLGPGWYRF--CGATAVQGSRKAFLAAGYLDDPAAXXXXXXXXXFGGITLVFVTPRWVRYHEFLKAPAATKRFMPVWSEEELLRCAELLFSGQDLERDVPQARVRELFRRWGGVPRYVLQYAHDDERQGTLTAAIHHCSVGDLHAAIRSTGEGTGTTVVLSDKLVHIHTCGAFTSKRLMWASDYVFDEFCSAQEKSLRLQLAAFL 876
            FW+A     +   + A   + LP  T+ +G    GS +Y+R CY  L       +    ++ +VI G PGIGKT + ++ L HL ++  TVVY+   G  RF  CG TAV GS   F     L +            +   T++  +PR   + ++ K     + +MPVW+E+E+L+C +L++S      D P  RV E +R+WGG+ RYVL++A  + +Q  L  AI+  +   L A + S G+ +   +++S +++HI     F ++  ++AS +V +   +      R +L AFL
Sbjct:  147 FWKAFQKDYTKFDLVAGKLIALPEDTFILGQEKCGSRMYVRHCYPQLWNVCLGALNRPGIRNLVILGNPGIGKTVFGYFILLHLARSNETVVYEPARGEDRFLFCGETAVAGSNTDFKDILNLSETYYVVDAIAPINYAAKTILLTSPRPKVWKDYYKDDCE-RFYMPVWTEQEILQCRDLMYS------DRPLGRVMECYRKWGGIARYVLRFAMVERQQSLLGEAINEVN---LEAIVNSNGQMSAKDIMISHRVLHILVEDDFNNEGYVFASRHVLNMVYNKVFAENRGRLLAFL 434          
BLAST of jgi.p|Trimin1|164594 vs. uniprot
Match: G5A7B9_PHYSP (Crinkler domain-containing protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G5A7B9_PHYSP)

HSP 1 Score: 140 bits (352), Expect = 5.650e-33
Identity = 97/278 (34.89%), Postives = 137/278 (49.28%), Query Frame = 1
Query:    1 FWRALSS--ASVDADGCLKLPAGTWFMGNRDFGSAIYIRDCYCNLMEQINKLV--AARRVQRVVITGTPGIGKTCYAFYWLWHLRQTGRTVVYQLGPGWYRFCGATAV--QGSRKAFLAAGYLDDPAAXXXXXXXXXFGGITLVFVTPRWVRYHEFLKAPAATKRFMPVWSEEELLRCAELLFSGQDLERDVPQARVRELFRRWGGVPRYVLQYAHDDERQGTLTAAIHHCSVGDLHAAIRSTGEGTGTTVVLSDKLVHIHTCGAFTSKRLMWASDYV 816
            FW+AL S    V A   +KLP GT+ +G+   GS IYIR CY  L +   + +     +   +VI G PGIGKT + F  L  L   G TVVY+ G    RF  +  V  QGS++ F                    F   T++   PR   ++EF K    +  +MPVWS EE+L+C EL+++      D P A V++ FRRWGG  RYVL+YA  D +Q  L  AI      DL   + + G+       +S +L+H      F ++  ++AS YV
Sbjct:  152 FWKALVSDRTEVKAGALIKLPEGTYLLGDELLGSRIYIRSCYPKLWKLCQQRIHDEVEKTPHLVILGNPGIGKTFFGFVILLLLAHAGATVVYENGILKRRFLFSRDVVAQGSQEDFAPILDRSTTYYIVDAVKPTYFKAKTILVTPPRRSIWYEFNKTNCQSC-YMPVWSIEEILQCRELMYA------DTPVAVVQDCFRRWGGTARYVLRYAQVDNQQALLGTAIDSA---DLDLLVNACGQVEAKDAEVSHRLLHYRVNKKFDNEYFVFASQYV 419          
BLAST of jgi.p|Trimin1|164594 vs. uniprot
Match: V9DU73_PHYPR (Crinkler domain-containing protein (Fragment) n=5 Tax=Phytophthora parasitica TaxID=4792 RepID=V9DU73_PHYPR)

HSP 1 Score: 137 bits (344), Expect = 7.040e-32
Identity = 95/280 (33.93%), Postives = 142/280 (50.71%), Query Frame = 1
Query:    1 FWRAL--SSASVDADGCLKLPAGTWFMGNRDFGSAIYIRDCYCNLMEQINKLVAARRVQ--RVVITGTPGIGKTCYAFYWLWHLRQTGRTVVYQLGPGWYRFCGATAV--QGSRKAFLAAGYLDDPAAXXXXXXXXX--FGGITLVFVTPRWVRYHEFLKAPAATKRFMPVWSEEELLRCAELLFSGQDLERDVPQARVRELFRRWGGVPRYVLQYAHDDERQGTLTAAIHHCSVGDLHAAIRSTGEGTGTTVVLSDKLVHIHTCGAFTSKRLMWASDYV 816
            FW+A    S  V AD  +KLP GT+ +G+   GS IYIR CY  L E   + +   +     +VI G PGIGKT + F  L  L + G TVVY+ G    RF     V  QGS++ F+    LD P             +   T++  +PR   ++ F K    +  +MPVWS +E+L+C EL++S        P+A V++ FRRWGG+ RYVL++A    +Q  L  A+    + DL   + + G+       +S +L+H      F ++  ++AS YV
Sbjct:  153 FWQAFLDDSTDVKADALVKLPEGTYILGDSSLGSRIYIRHCYPALWELCLERIHDEKTNTPHLVILGNPGIGKTFFGFVILLLLARAGETVVYESGGLKKRFLFTHTVVAQGSQEDFVRI--LDQPTTYYIVDAVKPAYYPAKTILLTSPRRSIWYAFNKTNCQSC-YMPVWSLKEILQCRELIYST------TPEAVVQDCFRRWGGIARYVLRFAQVGNQQVLLEKAM---DIVDLDWLVNACGQLDANDAQVSRRLLHYRVSRTFDNEYFVFASKYV 420          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|164594 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CEN6_9STRA3.860e-274100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A835Z6Q5_9STRA1.630e-8350.17Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CG71_9STRA3.800e-4737.16Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CIP4_9STRA2.210e-4136.08Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YLJ8_9STRA2.730e-3734.14Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A8A1V4H4_PHYCP6.360e-3634.88CRN125_11 protein (Fragment) n=1 Tax=Phytophthora ... [more]
M4C1F8_HYAAE1.480e-3433.80RxLR effector candidate protein n=1 Tax=Hyaloperon... [more]
M4C004_HYAAE1.200e-3330.54RxLR effector candidate protein n=3 Tax=Hyaloperon... [more]
G5A7B9_PHYSP5.650e-3334.89Crinkler domain-containing protein n=1 Tax=Phytoph... [more]
V9DU73_PHYPR7.040e-3233.93Crinkler domain-containing protein (Fragment) n=5 ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_32contigContig_32:392069..394221 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|164594|e_gw1.32.200.1
Descriptionto CRN-like CRN16
COG categoryS
Max annot lvl4751|Fungi
EggNOG OGs2CQRH@1|root,2R5I5@2759|Eukaryota,3A50G@33154|Opisthokonta,3P4XS@4751|Fungi
Evalue1.8e-37
Seed ortholog109871.XP_006681943.1
Hectar predicted targeting categoryother localisation
TranscriptId164916
TrackFilteredModels1
ProteinId164594
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|164594gene_5200Tribonema minus UTEX_B_3156 geneContig_32 392069..394221 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|164594Trimin1|164594|e_gw1.32.200.1Tribonema minus UTEX_B_3156 polypeptideContig_32 392069..394221 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_5200_2exon_5200_2Tribonema minus UTEX_B_3156 exonContig_32 392069..392801 -
exon_5200_1exon_5200_1Tribonema minus UTEX_B_3156 exonContig_32 393833..394221 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_5200CDS_5200Tribonema minus UTEX_B_3156 CDSContig_32 393833..394221 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_5200 ID=mRNA_5200|Name=jgi.p|Trimin1|164594|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1122bp|location=Sequence derived from alignment at Contig_32:392069..394221- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
TTCTGGCGCGCCCTCTCAAGCGCCAGCGTGGACGCTGACGGCTGCCTGAA
GCTGCCCGCCGGCACCTGGTTCATGGGGAACCGCGACTTTGGCAGTGCCA
TCTACATCAGGGACTGCTACTGCAATCTAATGGAGCAGATCAACAAGTTG
GTGGCCGCAAGAAGGGTACAGCGGGTCGTCATCACCGGCACGCCTGGAAT
CGGCAAGACCTGCTACGCTTTCTACTGGCTGTGGCACCTGCGCCAGACGG
GGAGGACAGTGGTGTATCAACTGGGGCCCGGTTGGTACCGCTTCTGCGGT
GCCACCGCCGTGCAGGGCAGCAGAAAAGCCTTCCTTGCGGCCGGTTACTT
GGATGACCCAGCTGCCTGGTACCTGTCCGACCCTGCTGACTGGTTTGGGG
GCATCACGCTCGTCTTTGTGACACCGCGCTGGGTGCGCTACCACGAGTTT
CTGAAGGCGCCGGCCGCCACCAAACGCTTCATGCCAGTGTGGTCTGAGGA
GGAGTTGCTGCGCTGCGCTGAGCTGCTGTTCAGTGGCCAAGATCTCGAGC
GAGACGTGCCGCAGGCGCGGGTGCGAGAGCTGTTCAGGCGGTGGGGTGGG
GTGCCGCGCTACGTGCTGCAGTACGCGCATGATGACGAGCGGCAGGGCAC
GCTCACCGCCGCCATACATCACTGCAGCGTTGGCGATTTGCACGCCGCCA
TCAGAAGTACGGGAGAGGGGACGGGCACCACGGTGGTGCTGTCAGACAAA
CTGGTGCACATCCACACCTGCGGTGCTTTCACCTCGAAGCGGCTGATGTG
GGCGTCAGACTACGTGTTCGATGAGTTCTGCAGCGCTCAAGAGAAGTCGC
TGCGGCTGCAGCTGGCAGCGTTCCTGGTGAGGTACCTATTCTGGCTGTGC
GCGGCCTGCTCTATAAGCCTATGGTGCACAGGGTGTTTGGCCAGGGTGGG
AAGTTCGCTTGCAAGGAGCTCGGTGGTGAGTCTGGTGCGTCCTTCCCACA
TGCGTGGACAGTTCACACGACCGAGCGCTTCTCCAAGTTGGCTGATGTTG
AAGTGCAACGGGGCGTGTACTACTACCCAACAGCTGGCACTTGCCTTGCT
GCAGCGCACTCGTTCGCACTAG
back to top

protein sequence of jgi.p|Trimin1|164594

>Trimin1|164594|e_gw1.32.200.1 ID=Trimin1|164594|e_gw1.32.200.1|Name=jgi.p|Trimin1|164594|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=374bp
FWRALSSASVDADGCLKLPAGTWFMGNRDFGSAIYIRDCYCNLMEQINKL
VAARRVQRVVITGTPGIGKTCYAFYWLWHLRQTGRTVVYQLGPGWYRFCG
ATAVQGSRKAFLAAGYLDDPAAWYLSDPADWFGGITLVFVTPRWVRYHEF
LKAPAATKRFMPVWSEEELLRCAELLFSGQDLERDVPQARVRELFRRWGG
VPRYVLQYAHDDERQGTLTAAIHHCSVGDLHAAIRSTGEGTGTTVVLSDK
LVHIHTCGAFTSKRLMWASDYVFDEFCSAQEKSLRLQLAAFLVRYLFWLC
AACSISLWCTGCLARVGSSLARSSVVSLVRPSHMRGQFTRPSASPSWLML
KCNGACTTTQQLALALLQRTRSH*
back to top

mRNA from alignment at Contig_32:392069..394221-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5200 ID=mRNA_5200|Name=jgi.p|Trimin1|164594|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2153bp|location=Sequence derived from alignment at Contig_32:392069..394221- (Tribonema minus UTEX_B_3156 )
TTCTGGCGCGCCCTCTCAAGCGCCAGCGTGGACGCTGACGGCTGCCTGAA GCTGCCCGCCGGCACCTGGTTCATGGGGAACCGCGACTTTGGCAGTGCCA TCTACATCAGGGACTGCTACTGCAATCTAATGGAGCAGATCAACAAGTTG GTGGCCGCAAGAAGGGTACAGCGGGTCGTCATCACCGGCACGCCTGGAAT CGGCAAGACCTGCTACGCTTTCTACTGGCTGTGGCACCTGCGCCAGACGG GGAGGACAGTGGTGTATCAACTGGGGCCCGGTTGGTACCGCTTCTGCGGT GCCACCGCCGTGCAGGGCAGCAGAAAAGCCTTCCTTGCGGCCGGTTACTT GGATGACCCAGCTGCCTGGTACCTGTCCGACCCTGCTGAGTCGAAGAAGC CCTACAGGTAAGCTGAATGTCAGGGTGATGCGGGTGGTGTTGGCCCTACT GCGAGCTCTCACCATGAATACCAAAACAAAACGCAGCGGTAGGCATTTGT GCGGCGGCCAACGCACCTTCAACAAAAGTAACTCGCCTCACACAGCAACG GTCATGCTGCAATGCTGCACACTTAGAGTGTTTCACCAGCCACATCTGCT TTTTTCCCTCAGCAGCAGAGATCACAACCTAAGAGATTGGCGTGTCTGCT GTTTGCCTCATTGCCATACTATTCAACCTCGCTTCACGCACATGAATACA GCCATGTAACACAACGGTACAACGGCGGTATCTTCGAGAGAAAGGTGGTA TTTAGAGTCGAATATGATCACAATGACTTGCTGCATTGTCTCTGTTGGCA CCTGCGGAAGCAGTCATCAGCCATGCGGTTCATGACATAGAGTCATGAAT CATGATTGCTACAGTTAGGGCCTGAAGTCGAACTGTCAGGGTTTGGTTTG AGTTCATATCAACACTGACCTTCAAATGCTGCTCAAACCTTCCTACGCTG ATATCAGTTTCCACAGCTGTTGCTGTGCAAAGCGATCAGACGGGGTGGTG AGCCAGACATGCACTTCTAGTAGCACTTGCGCTTTTTAGAGCAGTGGGGG GGACATCCACTCAAGCGACTTTGTTCCATAGGGTTGGCATAAACCGTAGG GTTTAAGGTTAGGGTGAGGGGTAGGGTTAGGGTTAGCTACAAAATCAAGT GAGGATTTGGGTGAGGCTAGCTACCCGGTAGCTAGGGTTTGCTGTCCGCG CCATGATGTCATGACCAAGCCTGATCACAGCTGTAAGTCTGATCACAGCT GTAAGGTAATTTGCTTGACAGGGTGTATGGGTCTCACTTCAAGCACCAAG CACATAGGAGTGGTGCCACAGTCAGGGCGTTCAAGTTAGTACTCTGCATT CATGGGAGTGTCACCTAGGTGCACAGGTGTCTGACACTGTATTCCTTGTC CTCTGTTCTGCGCACACCAGCTGGTTTGGGGGCATCACGCTCGTCTTTGT GACACCGCGCTGGGTGCGCTACCACGAGTTTCTGAAGGCGCCGGCCGCCA CCAAACGCTTCATGCCAGTGTGGTCTGAGGAGGAGTTGCTGCGCTGCGCT GAGCTGCTGTTCAGTGGCCAAGATCTCGAGCGAGACGTGCCGCAGGCGCG GGTGCGAGAGCTGTTCAGGCGGTGGGGTGGGGTGCCGCGCTACGTGCTGC AGTACGCGCATGATGACGAGCGGCAGGGCACGCTCACCGCCGCCATACAT CACTGCAGCGTTGGCGATTTGCACGCCGCCATCAGAAGTACGGGAGAGGG GACGGGCACCACGGTGGTGCTGTCAGACAAACTGGTGCACATCCACACCT GCGGTGCTTTCACCTCGAAGCGGCTGATGTGGGCGTCAGACTACGTGTTC GATGAGTTCTGCAGCGCTCAAGAGAAGTCGCTGCGGCTGCAGCTGGCAGC GTTCCTGGTGAGGTACCTATTCTGGCTGTGCGCGGCCTGCTCTATAAGCC TATGGTGCACAGGGTGTTTGGCCAGGGTGGGAAGTTCGCTTGCAAGGAGC TCGGTGGTGAGTCTGGTGCGTCCTTCCCACATGCGTGGACAGTTCACACG ACCGAGCGCTTCTCCAAGTTGGCTGATGTTGAAGTGCAACGGGGCGTGTA CTACTACCCAACAGCTGGCACTTGCCTTGCTGCAGCGCACTCGTTCGCAC TAG
back to top

Coding sequence (CDS) from alignment at Contig_32:392069..394221-

>mRNA_5200 ID=mRNA_5200|Name=jgi.p|Trimin1|164594|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1122bp|location=Sequence derived from alignment at Contig_32:392069..394221- (Tribonema minus UTEX_B_3156 )
TTCTGGCGCGCCCTCTCAAGCGCCAGCGTGGACGCTGACGGCTGCCTGAA
GCTGCCCGCCGGCACCTGGTTCATGGGGAACCGCGACTTTGGCAGTGCCA
TCTACATCAGGGACTGCTACTGCAATCTAATGGAGCAGATCAACAAGTTG
GTGGCCGCAAGAAGGGTACAGCGGGTCGTCATCACCGGCACGCCTGGAAT
CGGCAAGACCTGCTACGCTTTCTACTGGCTGTGGCACCTGCGCCAGACGG
GGAGGACAGTGGTGTATCAACTGGGGCCCGGTTGGTACCGCTTCTGCGGT
GCCACCGCCGTGCAGGGCAGCAGAAAAGCCTTCCTTGCGGCCGGTTACTT
GGATGACCCAGCTGCCTGGTACCTGTCCGACCCTGCTGACTGGTTTGGGG
GCATCACGCTCGTCTTTGTGACACCGCGCTGGGTGCGCTACCACGAGTTT
CTGAAGGCGCCGGCCGCCACCAAACGCTTCATGCCAGTGTGGTCTGAGGA
GGAGTTGCTGCGCTGCGCTGAGCTGCTGTTCAGTGGCCAAGATCTCGAGC
GAGACGTGCCGCAGGCGCGGGTGCGAGAGCTGTTCAGGCGGTGGGGTGGG
GTGCCGCGCTACGTGCTGCAGTACGCGCATGATGACGAGCGGCAGGGCAC
GCTCACCGCCGCCATACATCACTGCAGCGTTGGCGATTTGCACGCCGCCA
TCAGAAGTACGGGAGAGGGGACGGGCACCACGGTGGTGCTGTCAGACAAA
CTGGTGCACATCCACACCTGCGGTGCTTTCACCTCGAAGCGGCTGATGTG
GGCGTCAGACTACGTGTTCGATGAGTTCTGCAGCGCTCAAGAGAAGTCGC
TGCGGCTGCAGCTGGCAGCGTTCCTGGTGAGGTACCTATTCTGGCTGTGC
GCGGCCTGCTCTATAAGCCTATGGTGCACAGGGTGTTTGGCCAGGGTGGG
AAGTTCGCTTGCAAGGAGCTCGGTGGTGAGTCTGGTGCGTCCTTCCCACA
TGCGTGGACAGTTCACACGACCGAGCGCTTCTCCAAGTTGGCTGATGTTG
AAGTGCAACGGGGCGTGTACTACTACCCAACAGCTGGCACTTGCCTTGCT
GCAGCGCACTCGTTCGCACTAG
back to top