mRNA_520 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|157470
Unique NamemRNA_520
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|157470 vs. uniprot
Match: A0A835Z7X2_9STRA (Ubiquitin-related domain-containing protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7X2_9STRA)

HSP 1 Score: 248 bits (634), Expect = 4.360e-83
Identity = 122/126 (96.83%), Postives = 122/126 (96.83%), Query Frame = 1 
Query:    1 MLQQPGVAYRNVQSTGDLSSAPQQGSALSKALRLRGGMQLFVKTLTGKTVSVDVDPGDSIETLKHKIQEKEGTPPDQQRIIFGGKQLQGGEKTLGDFDLEDGSTLHLVLRLRGGPRRQWRNHWVQK 378
            MLQQPGVAYR VQS GDLSSAPQQGSALSK LRLRGGMQLFVKTLTGKTVSVDVDPGDSIETLKHKIQEKEG PPDQQRIIFGGKQLQGGEKTLGDFDLEDGSTLHLVLRLRGGPRRQWRNHWVQK
Sbjct:   24 MLQQPGVAYRKVQSMGDLSSAPQQGSALSKTLRLRGGMQLFVKTLTGKTVSVDVDPGDSIETLKHKIQEKEGIPPDQQRIIFGGKQLQGGEKTLGDFDLEDGSTLHLVLRLRGGPRRQWRNHWVQK 149
[Close]
BLAST of jgi.p|Trimin1|157470 vs. uniprot
Match: A0A6H5L3W0_9PHAE (Ubiquitin-like domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L3W0_9PHAE)

HSP 1 Score: 152 bits (385), Expect = 9.140e-45
Identity = 73/94 (77.66%), Postives = 83/94 (88.30%), Query Frame = 1 
Query:   64 PQQGSALSKALRLRGGMQLFVKTLTGKTVSVDVDPGDSIETLKHKIQEKEGTPPDQQRIIFGGKQLQGGEKTLGDFDLEDGSTLHLVLRLRGGP 345
            P+  S L + +RLRGGMQLFVKTLTGKTV+VDV+PGDSIETLKHKIQEKEG P +QQRIIFGGKQL G +K L DF+LE+G+TLHLVLRLRGGP
Sbjct:   55 PRHESVLDRVVRLRGGMQLFVKTLTGKTVTVDVEPGDSIETLKHKIQEKEGIPAEQQRIIFGGKQLSGADKQLSDFELEEGNTLHLVLRLRGGP 148
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BLAST of jgi.p|Trimin1|157470 vs. uniprot
Match: A0A7S2V0I9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V0I9_9STRA)

HSP 1 Score: 129 bits (323), Expect = 8.200e-36
Identity = 63/92 (68.48%), Postives = 75/92 (81.52%), Query Frame = 1 
Query:   67 QQGSALSKALRLRGGMQLFVKTLTGKTVSVDVDPGDSIETLKHKIQEKEGTPPDQQRIIFGGKQLQGGEKTLGDFDLEDGSTLHLVLRLRGG 342
            + G  +   LRLRGGMQ+FVKTL GKTVSV+V+PGD I+TLK KI EKEG P DQQR+IF GKQL+G  +TL D+D+EDG T+HLVLRLRGG
Sbjct:   36 EDGGTVHLVLRLRGGMQVFVKTLNGKTVSVEVEPGDDIDTLKKKIAEKEGVPVDQQRLIFAGKQLEG--QTLADYDIEDGGTVHLVLRLRGG 125
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BLAST of jgi.p|Trimin1|157470 vs. uniprot
Match: A0A7S3H4Z7_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H4Z7_9STRA)

HSP 1 Score: 128 bits (321), Expect = 1.700e-35
Identity = 64/96 (66.67%), Postives = 79/96 (82.29%), Query Frame = 1 
Query:   64 PQQGSALSKALRLRGGMQLFVKTLTGKTVSVDVDPGDSIETLKHKIQEKEGTPPDQQRIIFGGKQLQGGEKTLGDFDLEDGSTLHLVLRLRGGPRR 351
            P   S+L K L +RGGMQ+FVKTLTGKT+SV+V+P +SIE+LK KIQEKEG PP +QRIIFGGKQL    K+L D+D+++ STLHLVLRLRGG +R
Sbjct:   41 PSIKSSLGKTLEIRGGMQVFVKTLTGKTISVEVEPDESIESLKAKIQEKEGIPPGEQRIIFGGKQLDA-LKSLSDYDIDEDSTLHLVLRLRGGLKR 135
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BLAST of jgi.p|Trimin1|157470 vs. uniprot
Match: A0A0C2JX55_THEKT (Polyubiquitin n=1 Tax=Thelohanellus kitauei TaxID=669202 RepID=A0A0C2JX55_THEKT)

HSP 1 Score: 128 bits (322), Expect = 5.030e-35
Identity = 62/92 (67.39%), Postives = 78/92 (84.78%), Query Frame = 1 
Query:   67 QQGSALSKALRLRGGMQLFVKTLTGKTVSVDVDPGDSIETLKHKIQEKEGTPPDQQRIIFGGKQLQGGEKTLGDFDLEDGSTLHLVLRLRGG 342
            Q+ S L   LRLRGGMQ+FVKTLTGKT+++DV+P DS+ET+K KIQ+KEG PPDQQR+IF GKQL+ G +TL D++++  STLHLVLRLRGG
Sbjct:   62 QKESTLHLVLRLRGGMQIFVKTLTGKTITLDVEPNDSVETVKSKIQDKEGIPPDQQRLIFAGKQLEDG-RTLSDYNIQKESTLHLVLRLRGG 152
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BLAST of jgi.p|Trimin1|157470 vs. uniprot
Match: A0A0G4HF80_9ALVE (Uncharacterized protein n=2 Tax=Eukaryota TaxID=2759 RepID=A0A0G4HF80_9ALVE)

HSP 1 Score: 126 bits (317), Expect = 8.690e-35
Identity = 62/92 (67.39%), Postives = 77/92 (83.70%), Query Frame = 1 
Query:   67 QQGSALSKALRLRGGMQLFVKTLTGKTVSVDVDPGDSIETLKHKIQEKEGTPPDQQRIIFGGKQLQGGEKTLGDFDLEDGSTLHLVLRLRGG 342
            Q+ S L   LRLRGGMQ+FVKTLTGKT+++DV+P DSIE +K KIQ+KEG PPDQQR+IF GKQL+ G +TL D++++  STLHLVLRLRGG
Sbjct:   62 QKESTLHLVLRLRGGMQIFVKTLTGKTITLDVEPSDSIENVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLSDYNIQKESTLHLVLRLRGG 152
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BLAST of jgi.p|Trimin1|157470 vs. uniprot
Match: A0A2K5QKH5_CEBIM (Uncharacterized protein n=2 Tax=Cebus imitator TaxID=2715852 RepID=A0A2K5QKH5_CEBIM)

HSP 1 Score: 126 bits (316), Expect = 1.100e-34
Identity = 60/92 (65.22%), Postives = 79/92 (85.87%), Query Frame = 1 
Query:   67 QQGSALSKALRLRGGMQLFVKTLTGKTVSVDVDPGDSIETLKHKIQEKEGTPPDQQRIIFGGKQLQGGEKTLGDFDLEDGSTLHLVLRLRGG 342
            Q+ S L   LRLRGGMQ+F+KTLTGKT++++V+P D+IE +K KIQ+KEGTPPDQQR+IF GKQL+ G +TL D+++++ STLHLVLRLRGG
Sbjct:   58 QKESTLHLVLRLRGGMQIFLKTLTGKTITLEVEPSDTIENVKAKIQDKEGTPPDQQRLIFAGKQLEDG-RTLSDYNIQEESTLHLVLRLRGG 148
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BLAST of jgi.p|Trimin1|157470 vs. uniprot
Match: A0A7S1UFV6_9STRA (Hypothetical protein n=2 Tax=Ochrophyta TaxID=2696291 RepID=A0A7S1UFV6_9STRA)

HSP 1 Score: 125 bits (313), Expect = 1.210e-34
Identity = 60/92 (65.22%), Postives = 77/92 (83.70%), Query Frame = 1 
Query:   67 QQGSALSKALRLRGGMQLFVKTLTGKTVSVDVDPGDSIETLKHKIQEKEGTPPDQQRIIFGGKQLQGGEKTLGDFDLEDGSTLHLVLRLRGG 342
            Q+ S L   LRLRGGMQ+FVKTLTGKT+++DV+P D+I+ +K KIQ+KEG PPDQQR+IF GKQL+ G +TL D++++  STLHLVLRLRGG
Sbjct:   26 QKESTLHLVLRLRGGMQIFVKTLTGKTITLDVEPSDTIDNVKQKIQDKEGIPPDQQRLIFAGKQLEDG-RTLSDYNIQKESTLHLVLRLRGG 116
[Close]
BLAST of jgi.p|Trimin1|157470 vs. uniprot
Match: F0YA14_AURAN (Ubiquitin n=2 Tax=Sar TaxID=2698737 RepID=F0YA14_AURAN)

HSP 1 Score: 126 bits (316), Expect = 1.230e-34
Identity = 61/92 (66.30%), Postives = 77/92 (83.70%), Query Frame = 1 
Query:   67 QQGSALSKALRLRGGMQLFVKTLTGKTVSVDVDPGDSIETLKHKIQEKEGTPPDQQRIIFGGKQLQGGEKTLGDFDLEDGSTLHLVLRLRGG 342
            Q+ S L   LRLRGGMQ+FVKTLTGKT+++DV+P DSI+ +K KIQ+KEG PPDQQR+IF GKQL+ G +TL D++++  STLHLVLRLRGG
Sbjct:   62 QKESTLHLVLRLRGGMQIFVKTLTGKTITLDVEPSDSIDNVKQKIQDKEGIPPDQQRLIFAGKQLEDG-RTLSDYNIQKESTLHLVLRLRGG 152
[Close]
BLAST of jgi.p|Trimin1|157470 vs. uniprot
Match: A0A7S3UFL9_9CHLO (Hypothetical protein n=1 Tax=Picocystis salinarum TaxID=88271 RepID=A0A7S3UFL9_9CHLO)

HSP 1 Score: 127 bits (318), Expect = 1.260e-34
Identity = 62/92 (67.39%), Postives = 77/92 (83.70%), Query Frame = 1 
Query:   67 QQGSALSKALRLRGGMQLFVKTLTGKTVSVDVDPGDSIETLKHKIQEKEGTPPDQQRIIFGGKQLQGGEKTLGDFDLEDGSTLHLVLRLRGG 342
            Q+ S L   LRLRGGMQ+FVKTLTGKT+++DVDP DSI+ +K KIQ+KEG PPDQQR+IF GKQL+ G +TL D++++  STLHLVLRLRGG
Sbjct:   34 QKESTLHLVLRLRGGMQIFVKTLTGKTITLDVDPSDSIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLADYNIQKESTLHLVLRLRGG 124
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|157470 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z7X2_9STRA4.360e-8396.83Ubiquitin-related domain-containing protein n=2 Ta... [more]
A0A6H5L3W0_9PHAE9.140e-4577.66Ubiquitin-like domain-containing protein n=2 Tax=E... [more]
A0A7S2V0I9_9STRA8.200e-3668.48Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A7S3H4Z7_9STRA1.700e-3566.67Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A0C2JX55_THEKT5.030e-3567.39Polyubiquitin n=1 Tax=Thelohanellus kitauei TaxID=... [more]
A0A0G4HF80_9ALVE8.690e-3567.39Uncharacterized protein n=2 Tax=Eukaryota TaxID=27... [more]
A0A2K5QKH5_CEBIM1.100e-3465.22Uncharacterized protein n=2 Tax=Cebus imitator Tax... [more]
A0A7S1UFV6_9STRA1.210e-3465.22Hypothetical protein n=2 Tax=Ochrophyta TaxID=2696... [more]
F0YA14_AURAN1.230e-3466.30Ubiquitin n=2 Tax=Sar TaxID=2698737 RepID=F0YA14_A... [more]
A0A7S3UFL9_9CHLO1.260e-3467.39Hypothetical protein n=1 Tax=Picocystis salinarum ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_3contigContig_3:2094334..2095773 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|157470|e_gw1.3.536.1
BRITEbr01610,ko00000,ko00001,ko00002,ko03011,ko04121,ko04147
KEGG ModuleM00177,M00179
KEGG Pathwayko03010,ko03320,ko04137,ko04144,ko05012,ko05167,map03010,map03320,map04137,map04144,map05012,map05167
KEGG koko:K02927,ko:K02977,ko:K04551,ko:K08770
GOsGO:0000122,GO:0000165,GO:0000187,GO:0000209,GO:0000715,GO:0000731,GO:0000902,GO:0001666,GO:0001932,GO:0001934,GO:0002218,GO:0002221,GO:0002224,GO:0002253,GO:0002376,GO:0002682,GO:0002684,GO:0002753,GO:0002755,GO:0002756,GO:0002757,GO:0002758,GO:0002764,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005739,GO:0005740,GO:0005741,GO:0005768,GO:0005783,GO:0005789,GO:0005829,GO:0005886,GO:0006139,GO:0006259,GO:0006281,GO:0006283,GO:0006289,GO:0006294,GO:0006296,GO:0006297,GO:0006301,GO:0006355,GO:0006357,GO:0006464,GO:0006468,GO:0006508,GO:0006511,GO:0006605,GO:0006625,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006886,GO:0006928,GO:0006950,GO:0006974,GO:0006996,GO:0007017,GO:0007018,GO:0007031,GO:0007154,GO:0007165,GO:0007166,GO:0007167,GO:0007178,GO:0007179,GO:0007249,GO:0007254,GO:0007267,GO:0007275,GO:0007399,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009628,GO:0009653,GO:0009719,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009894,GO:0009966,GO:0009967,GO:0009968,GO:0009987,GO:0010008,GO:0010033,GO:0010468,GO:0010498,GO:0010556,GO:0010557,GO:0010558,GO:0010562,GO:0010604,GO:0010605,GO:0010608,GO:0010628,GO:0010629,GO:0010646,GO:0010647,GO:0010648,GO:0010941,GO:0010942,GO:0010970,GO:0012505,GO:0012506,GO:0015031,GO:0015833,GO:0016020,GO:0016032,GO:0016043,GO:0016055,GO:0016192,GO:0016197,GO:0016310,GO:0016567,GO:0016579,GO:0017015,GO:0018130,GO:0019058,GO:0019068,GO:0019219,GO:0019220,GO:0019221,GO:0019222,GO:0019438,GO:0019538,GO:0019867,GO:0019941,GO:0019985,GO:0022008,GO:0022607,GO:0023014,GO:0023051,GO:0023052,GO:0023056,GO:0023057,GO:0030030,GO:0030139,GO:0030154,GO:0030162,GO:0030163,GO:0030182,GO:0030512,GO:0030522,GO:0030659,GO:0030666,GO:0030705,GO:0031090,GO:0031098,GO:0031145,GO:0031175,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031329,GO:0031347,GO:0031349,GO:0031396,GO:0031398,GO:0031399,GO:0031401,GO:0031410,GO:0031966,GO:0031967,GO:0031968,GO:0031974,GO:0031975,GO:0031981,GO:0031982,GO:0031984,GO:0032147,GO:0032268,GO:0032270,GO:0032446,GO:0032501,GO:0032502,GO:0032989,GO:0032990,GO:0033036,GO:0033365,GO:0033554,GO:0033674,GO:0033683,GO:0034097,GO:0034613,GO:0034622,GO:0034641,GO:0034643,GO:0034645,GO:0034654,GO:0035556,GO:0035666,GO:0035872,GO:0036211,GO:0036293,GO:0036294,GO:0036297,GO:0036477,GO:0042175,GO:0042176,GO:0042221,GO:0042276,GO:0042325,GO:0042327,GO:0042391,GO:0042769,GO:0042886,GO:0042981,GO:0042995,GO:0043005,GO:0043025,GO:0043065,GO:0043066,GO:0043067,GO:0043068,GO:0043069,GO:0043085,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043405,GO:0043406,GO:0043408,GO:0043410,GO:0043412,GO:0043487,GO:0043488,GO:0043549,GO:0043574,GO:0043618,GO:0043620,GO:0043632,GO:0043933,GO:0044085,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044271,GO:0044297,GO:0044403,GO:0044419,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044429,GO:0044432,GO:0044433,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0044766,GO:0045088,GO:0045089,GO:0045184,GO:0045859,GO:0045860,GO:0045892,GO:0045893,GO:0045934,GO:0045935,GO:0045937,GO:0045944,GO:0046483,GO:0046794,GO:0046907,GO:0047497,GO:0048468,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048585,GO:0048666,GO:0048699,GO:0048731,GO:0048812,GO:0048856,GO:0048858,GO:0048869,GO:0050776,GO:0050778,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051090,GO:0051091,GO:0051092,GO:0051171,GO:0051172,GO:0051173,GO:0051174,GO:0051179,GO:0051234,GO:0051246,GO:0051247,GO:0051252,GO:0051253,GO:0051254,GO:0051276,GO:0051338,GO:0051347,GO:0051403,GO:0051603,GO:0051606,GO:0051640,GO:0051641,GO:0051646,GO:0051649,GO:0051654,GO:0051656,GO:0051704,GO:0051716,GO:0051881,GO:0055085,GO:0060255,GO:0060548,GO:0061013,GO:0061024,GO:0061136,GO:0061418,GO:0065003,GO:0065004,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070423,GO:0070482,GO:0070498,GO:0070555,GO:0070646,GO:0070647,GO:0070727,GO:0070848,GO:0070887,GO:0070911,GO:0070987,GO:0071310,GO:0071345,GO:0071347,GO:0071363,GO:0071453,GO:0071456,GO:0071495,GO:0071559,GO:0071560,GO:0071702,GO:0071704,GO:0071705,GO:0071824,GO:0071840,GO:0071897,GO:0071900,GO:0071902,GO:0071944,GO:0072384,GO:0072594,GO:0072662,GO:0072663,GO:0075733,GO:0080090,GO:0080134,GO:0090092,GO:0090101,GO:0090287,GO:0090288,GO:0090304,GO:0090305,GO:0097458,GO:0097708,GO:0098588,GO:0098805,GO:0098827,GO:0099111,GO:0120025,GO:0120036,GO:0120039,GO:0198738,GO:1901214,GO:1901360,GO:1901362,GO:1901564,GO:1901565,GO:1901575,GO:1901576,GO:1901796,GO:1901798,GO:1902253,GO:1902255,GO:1902525,GO:1902527,GO:1902531,GO:1902533,GO:1902579,GO:1902679,GO:1902680,GO:1903050,GO:1903311,GO:1903320,GO:1903322,GO:1903362,GO:1903506,GO:1903507,GO:1903508,GO:1903844,GO:1903845,GO:1905114,GO:2000112,GO:2000113,GO:2001141,GO:2001233,GO:2001235,GO:2001242,GO:2001244
Preferred nameUBB
Descriptioncellular macromolecule catabolic process
COG categoryO
Max annot lvl2759|Eukaryota
EggNOG OGsCOG5272@1|root,KOG0001@2759|Eukaryota
Evalue7.23e-46
Seed ortholog2880.D8LIW2
Hectar predicted targeting categoryother localisation
TranscriptId157792
TrackFilteredModels1
ProteinId157470
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|157470gene_520Tribonema minus UTEX_B_3156 geneContig_3 2094334..2095773 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_520_1exon_520_1Tribonema minus UTEX_B_3156 exonContig_3 2094334..2094516 +
exon_520_2exon_520_2Tribonema minus UTEX_B_3156 exonContig_3 2095576..2095773 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_520CDS_520Tribonema minus UTEX_B_3156 CDSContig_3 2094334..2094516 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|157470Trimin1|157470|e_gw1.3.536.1Tribonema minus UTEX_B_3156 polypeptideContig_3 2094334..2095773 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_520 ID=mRNA_520|Name=jgi.p|Trimin1|157470|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=381bp|location=Sequence derived from alignment at Contig_3:2094334..2095773+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCTGCAGCAGCCTGGTGTTGCTTATAGGAATGTGCAGTCCACGGGAGA
CCTCTCGTCAGCACCGCAGCAGGGGTCCGCTCTCAGCAAGGCATTACGGC
TACGCGGAGGAATGCAGCTGTTCGTCAAGACGCTCACTGGAAAAACTGTG
TCGGTGGATGTGGACCCTGGAGACAGCATTGAGACTCTCAAGCACAAGAT
CCAGGAGAAGGAGGGCACCCCCCCCGACCAGCAGCGCATCATATTCGGCG
GCAAGCAGCTGCAGGGAGGCGAGAAGACGCTGGGCGACTTTGATCTGGAG
GATGGAAGCACACTGCACCTGGTGCTCAGGCTCAGGGGCGGACCCAGGCG
GCAATGGCGAAACCACTGGGTGCAGAAGTAG
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protein sequence of jgi.p|Trimin1|157470

>Trimin1|157470|e_gw1.3.536.1 ID=Trimin1|157470|e_gw1.3.536.1|Name=jgi.p|Trimin1|157470|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=127bp
MLQQPGVAYRNVQSTGDLSSAPQQGSALSKALRLRGGMQLFVKTLTGKTV
SVDVDPGDSIETLKHKIQEKEGTPPDQQRIIFGGKQLQGGEKTLGDFDLE
DGSTLHLVLRLRGGPRRQWRNHWVQK*
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mRNA from alignment at Contig_3:2094334..2095773+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_520 ID=mRNA_520|Name=jgi.p|Trimin1|157470|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1440bp|location=Sequence derived from alignment at Contig_3:2094334..2095773+ (Tribonema minus UTEX_B_3156 )
ATGCTGCAGCAGCCTGGTGTTGCTTATAGGAATGTGCAGTCCACGGGAGA
CCTCTCGTCAGCACCGCAGCAGGGGTCCGCTCTCAGCAAGGCATTACGGC
TACGCGGAGGAATGCAGCTGTTCGTCAAGACGCTCACTGGAAAAACTGTG
TCGGTGGATGTGGACCCTGGAGACAGCATTGAGGTGAGCCAGTGACTGAA
GTCCTGCGTTCGCCATGAAAAAGGCAATCATACCACCAACAATGACAGCA
TCCCCAGGAGGCAAATAGCTACCTTTGATTTCTGTAGCCTCTTTCGCTTA
GTTTGCCATCAAGTGTGGAGCACATTGCTGTGTATCAGAGTCAGCACGAG
TTTGTGGTAGTGCTGCTGTCAAGTACTGGGCAAATGAACCCGGGTGTGGC
CGTCAGAGGGGGTGCTGCAAAAAAGGGTGCCCCCGGGGCAGTGGTCGTTG
CCGTTTAGGGGGAGGGGAAGGGGATGGGGGGGAAGCTGGCTTGATGCGTG
CTGGCAAGATAAGCTTGGCGACGCCCCTACTGTTTGCCACTCACACCACT
CCATGGCACGGCATGGGGTATTTCAAACGCTCCAACGCCTTCGCTATAAC
CTGCACGCTTGTGCTGGTATGTACAAATGATGATGCGGCAGGGGGTCCAC
AGGCAGGACCTCCTGCGATGGATGAAACTCTGCAGGTGCTGCTGGTGCAG
CAGTACGCTGCTGGTATAACTAACCTGCGACCTGCAGCAGTGTCATGTAT
TGCAAGTTGCACCTTTGCATTGTGTACATGTAGCACCTCTCGGAAGCACC
CAAACGTACGTCACATATGCATGGCAAATGACATTCAGGCCTTGGTGCCG
CTTTGGGGGGACTCGTGTTTTGTTTGCTCAAAGCTGATGTGCTGCAAGCC
CCGCAGCTCGCTTACATTTCAGGTGGCGTTTGGCGGTACAGGGGGGTGCT
TACTCCTGCACACGCATATGCTATGACTAGCAACTGAGCTACCATAACAT
TGTTATATCAACCTCGTTGTTGTTACGACGACCTCAATCACTGCACTGGC
CAACTTTGAGGATACTCTATGGTTCTCAACTCCAATACTCACAGTCGCTG
GTTCAGCAGCATCAATCGCCACCTGGCCAATTTGGAGGATACTCAATGTC
CTTTACCCCAGGTACGCGCGGTACCTGGCTGAGCAGCACCAATTGCCAAC
ATGCACCTGATTTCACCGCACCGCGTGCCGTCTCCCCCGCAGACTCTCAA
GCACAAGATCCAGGAGAAGGAGGGCACCCCCCCCGACCAGCAGCGCATCA
TATTCGGCGGCAAGCAGCTGCAGGGAGGCGAGAAGACGCTGGGCGACTTT
GATCTGGAGGATGGAAGCACACTGCACCTGGTGCTCAGGCTCAGGGGCGG
ACCCAGGCGGCAATGGCGAAACCACTGGGTGCAGAAGTAG
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Coding sequence (CDS) from alignment at Contig_3:2094334..2095773+

>mRNA_520 ID=mRNA_520|Name=jgi.p|Trimin1|157470|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=381bp|location=Sequence derived from alignment at Contig_3:2094334..2095773+ (Tribonema minus UTEX_B_3156 )
ATGCTGCAGCAGCCTGGTGTTGCTTATAGGAATGTGCAGTCCACGGGAGA
CCTCTCGTCAGCACCGCAGCAGGGGTCCGCTCTCAGCAAGGCATTACGGC
TACGCGGAGGAATGCAGCTGTTCGTCAAGACGCTCACTGGAAAAACTGTG
TCGGTGGATGTGGACCCTGGAGACAGCATTGAGACTCTCAAGCACAAGAT
CCAGGAGAAGGAGGGCACCCCCCCCGACCAGCAGCGCATCATATTCGGCG
GCAAGCAGCTGCAGGGAGGCGAGAAGACGCTGGGCGACTTTGATCTGGAG
GATGGAAGCACACTGCACCTGGTGCTCAGGCTCAGGGGCGGACCCAGGCG
GCAATGGCGAAACCACTGGGTGCAGAAGTAG
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