mRNA_5197 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|164537 vs. uniprot
Match: A0A835YZN4_9STRA (Deoxycytidylate deaminase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZN4_9STRA) HSP 1 Score: 423 bits (1087), Expect = 8.270e-150 Identity = 208/208 (100.00%), Postives = 208/208 (100.00%), Query Frame = 1 Query: 1 MLTGEEATDELQQQEAKLEPQAVPAPTWAVGGARKDYLHWDDYFMSVAFLSAMRSKDPSTQVGACIVNPDKRIVGIGYNGFPAGCSDERLPWARAAPNELDTKYPYVCHAEMNAILNKNAADVRGCTIYVALFPCADCAKLIIQSGIAHVVYVSDKYRDAPAFVASRRMLDLAGVRCRRHVSARRRVTIDFGAADAATAEEAGTDGTL 624 MLTGEEATDELQQQEAKLEPQAVPAPTWAVGGARKDYLHWDDYFMSVAFLSAMRSKDPSTQVGACIVNPDKRIVGIGYNGFPAGCSDERLPWARAAPNELDTKYPYVCHAEMNAILNKNAADVRGCTIYVALFPCADCAKLIIQSGIAHVVYVSDKYRDAPAFVASRRMLDLAGVRCRRHVSARRRVTIDFGAADAATAEEAGTDGTL Sbjct: 1 MLTGEEATDELQQQEAKLEPQAVPAPTWAVGGARKDYLHWDDYFMSVAFLSAMRSKDPSTQVGACIVNPDKRIVGIGYNGFPAGCSDERLPWARAAPNELDTKYPYVCHAEMNAILNKNAADVRGCTIYVALFPCADCAKLIIQSGIAHVVYVSDKYRDAPAFVASRRMLDLAGVRCRRHVSARRRVTIDFGAADAATAEEAGTDGTL 208
BLAST of jgi.p|Trimin1|164537 vs. uniprot
Match: D8LJR7_ECTSI (CMP/dCMP-type deaminase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJR7_ECTSI) HSP 1 Score: 263 bits (673), Expect = 1.190e-85 Identity = 123/158 (77.85%), Postives = 139/158 (87.97%), Query Frame = 1 Query: 100 RKDYLHWDDYFMSVAFLSAMRSKDPSTQVGACIVNPDKRIVGIGYNGFPAGCSDERLPWARAAPNELDTKYPYVCHAEMNAILNKNAADVRGCTIYVALFPCADCAKLIIQSGIAHVVYVSDKYRDAPAFVASRRMLDLAGVRCRRHVSARRRVTIDF 573 R DYL WDDYFMSVAFLSAMRSKDPSTQVGACIVN DKRIVGIGYNGFP GCSD+ LPWAR A +ELDTKYPYVCHAEMNAILNKN+ADV+GC IYVALFPC +CAKLIIQSGI VVY+SDKYR+ + ASRR+ DL+GV+CR+H+ + ++TIDF Sbjct: 122 RTDYLVWDDYFMSVAFLSAMRSKDPSTQVGACIVNEDKRIVGIGYNGFPMGCSDDDLPWARQADDELDTKYPYVCHAEMNAILNKNSADVKGCLIYVALFPCNECAKLIIQSGIREVVYLSDKYRETNSMKASRRLFDLSGVKCRQHIPKQDKITIDF 279
BLAST of jgi.p|Trimin1|164537 vs. uniprot
Match: A0A7S2WUA8_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WUA8_9STRA) HSP 1 Score: 259 bits (662), Expect = 1.200e-83 Identity = 128/192 (66.67%), Postives = 151/192 (78.65%), Query Frame = 1 Query: 25 DELQQQEAKLEPQAVPAPTWAVGGARK-DYLHWDDYFMSVAFLSAMRSKDPSTQVGACIVNPDKRIVGIGYNGFPAGCSDERLPWARAAPNELDTKYPYVCHAEMNAILNKNAADVRGCTIYVALFPCADCAKLIIQSGIAHVVYVSDKYRDAPAFVASRRMLDLAGVRCRRHVSARRRVTIDFGAADAATA 597 DE ++ A+++P A A + G ++ DYL WDDYFMSVAFLSAMRSKDPSTQVGACIVNPD RIVGIGYNGFP GCSD++LPW+R ++LDTKY YV HAE+NAILNKN+A V GC +YVALFPC +CAKLIIQSGI V+Y+SDKY D P FVASRRML+LAGV+ R+H R+V IDFG TA Sbjct: 56 DEAGRKRARVQPAAGAAAGGSSAGTKRPDYLSWDDYFMSVAFLSAMRSKDPSTQVGACIVNPDNRIVGIGYNGFPTGCSDDKLPWSREGGSKLDTKYMYVVHAEVNAILNKNSASVTGCRMYVALFPCNECAKLIIQSGITEVIYLSDKYHDLPEFVASRRMLNLAGVKFRQHSPKSRQVVIDFGVDKVVTA 247
BLAST of jgi.p|Trimin1|164537 vs. uniprot
Match: A0A0D2VZ05_CAPO3 (Deoxycytidylate deaminase n=2 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2VZ05_CAPO3) HSP 1 Score: 248 bits (634), Expect = 4.790e-81 Identity = 116/182 (63.74%), Postives = 141/182 (77.47%), Query Frame = 1 Query: 31 LQQQEAKLEPQAVPAPTWAVGGARKDYLHWDDYFMSVAFLSAMRSKDPSTQVGACIVNPDKRIVGIGYNGFPAGCSDERLPWARAAPNELDTKYPYVCHAEMNAILNKNAADVRGCTIYVALFPCADCAKLIIQSGIAHVVYVSDKYRDAPAFVASRRMLDLAGVRCRRHVSARRRVTIDFG 576 L Q + EP V A R+DYL W DYFM+VAFLSA RSKDPS+QVGACIVN + +IVGIGYNG P GC+D+ LPWAR A + LDTKY YVCHAE+NA+LNKNA+DV+GCTIYVALFPC +CAK+IIQSGI V+Y SDKY D P FV SRR+ D+AG++ R+H+ +++TIDFG Sbjct: 8 LNHQTSTFEPATVSDNAPAAVKKRQDYLPWADYFMAVAFLSAQRSKDPSSQVGACIVNQENKIVGIGYNGMPNGCNDDLLPWARTAESPLDTKYMYVCHAELNAVLNKNASDVKGCTIYVALFPCNECAKIIIQSGIKEVIYKSDKYHDRPEFVVSRRLFDMAGIKYRQHIPKMKQITIDFG 189
BLAST of jgi.p|Trimin1|164537 vs. uniprot
Match: A0A8K1CQ50_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CQ50_PYTOL) HSP 1 Score: 253 bits (646), Expect = 1.030e-80 Identity = 118/162 (72.84%), Postives = 138/162 (85.19%), Query Frame = 1 Query: 100 RKDYLHWDDYFMSVAFLSAMRSKDPSTQVGACIVNPDKRIVGIGYNGFPAGCSDERLPWARAAPNE--LDTKYPYVCHAEMNAILNKNAADVRGCTIYVALFPCADCAKLIIQSGIAHVVYVSDKYRDAPAFVASRRMLDLAGVRCRRHVSARRRVTIDFGA 579 RKDY+ WDDYFMSVAFLSAMRSKDPSTQVGACIVNPDK+IVGIGYNGFP GCSD+ LPWAR + L+TKYPYVCHAEMNAILNKN ++++GCTIY+ALFPC +CAKLI+QSGI H+VY+SDKY D F+ASRR+LDLAGV R+H + ++ IDF A Sbjct: 183 RKDYISWDDYFMSVAFLSAMRSKDPSTQVGACIVNPDKKIVGIGYNGFPNGCSDDILPWARESKTNDPLETKYPYVCHAEMNAILNKNTSELKGCTIYIALFPCNECAKLIVQSGIRHIVYLSDKYHDDWKFIASRRLLDLAGVEYRQHRMEKNKLIIDFNA 344
BLAST of jgi.p|Trimin1|164537 vs. uniprot
Match: A0A833THJ4_PHYIN (Cytidine and deoxycytidylate deaminase zinc-binding region n=1 Tax=Phytophthora infestans TaxID=4787 RepID=A0A833THJ4_PHYIN) HSP 1 Score: 251 bits (641), Expect = 2.060e-80 Identity = 126/192 (65.62%), Postives = 145/192 (75.52%), Query Frame = 1 Query: 4 LTGEEATDELQQQEAKLEPQAVPAPTWAVGGARKDYLHWDDYFMSVAFLSAMRSKDPSTQVGACIVNPDKRIVGIGYNGFPAGCSDERLPWAR--AAPNELDTKYPYVCHAEMNAILNKNAADVRGCTIYVALFPCADCAKLIIQSGIAHVVYVSDKYRDAPAFVASRRMLDLAGVRCRRHVSARRRVTIDF 573 L G + + + + E KLE Q R DYL WDDYFMSVAFLSAMRSKDPSTQVGACIVNP+++IVGIGYNGFP GC D+ LPWAR A + LDTKYPYVCHAEMNAILNKN+ DV+GC+IYVALFPC +CAKLIIQSGIA VVY SDKY+ FVASRR+LD+AGV+ +H +V IDF Sbjct: 117 LDGNDVSWDASEDENKLETQKAVTTLPLAVQKRSDYLSWDDYFMSVAFLSAMRSKDPSTQVGACIVNPERKIVGIGYNGFPNGCGDDELPWARETATNSPLDTKYPYVCHAEMNAILNKNSTDVKGCSIYVALFPCNECAKLIIQSGIARVVYYSDKYKSDWKFVASRRLLDMAGVQYTQHKLQLSKVVIDF 308
BLAST of jgi.p|Trimin1|164537 vs. uniprot
Match: H3G722_PHYRM (CMP/dCMP-type deaminase domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3G722_PHYRM) HSP 1 Score: 245 bits (625), Expect = 4.520e-80 Identity = 118/160 (73.75%), Postives = 133/160 (83.12%), Query Frame = 1 Query: 100 RKDYLHWDDYFMSVAFLSAMRSKDPSTQVGACIVNPDKRIVGIGYNGFPAGCSDERLPWAR--AAPNELDTKYPYVCHAEMNAILNKNAADVRGCTIYVALFPCADCAKLIIQSGIAHVVYVSDKYRDAPAFVASRRMLDLAGVRCRRHVSARRRVTIDF 573 R DYL WDDYFMSVAFLSAMRSKDPSTQVGACIV+P+++IVGIGYNGFP GC D+ LPWAR A + LDTKYPYVCHAEMNAILNKN+ DV+GCTIYVALFPC +CAKLIIQSGI+ VVY SDKY FVASRR+LD+AGV+ +H +V IDF Sbjct: 3 RSDYLSWDDYFMSVAFLSAMRSKDPSTQVGACIVSPERKIVGIGYNGFPNGCGDDELPWARESATDSPLDTKYPYVCHAEMNAILNKNSTDVKGCTIYVALFPCNECAKLIIQSGISRVVYCSDKYNHDWKFVASRRLLDMAGVKYSQHKLQSAKVVIDF 162
BLAST of jgi.p|Trimin1|164537 vs. uniprot
Match: A0A6G0JC42_LARCR (Deoxycytidylate deaminase n=2 Tax=Larimichthys crocea TaxID=215358 RepID=A0A6G0JC42_LARCR) HSP 1 Score: 245 bits (626), Expect = 7.380e-80 Identity = 114/171 (66.67%), Postives = 136/171 (79.53%), Query Frame = 1 Query: 70 PAPTWAVGGA---RKDYLHWDDYFMSVAFLSAMRSKDPSTQVGACIVNPDKRIVGIGYNGFPAGCSDERLPWARAAPNELDTKYPYVCHAEMNAILNKNAADVRGCTIYVALFPCADCAKLIIQSGIAHVVYVSDKYRDAPAFVASRRMLDLAGVRCRRHVSARRRVTIDF 573 P P GG R+DYL W DYFM+VAFLSA RSKDPS+QVGACIVN + +IVGIGYNG P GC D+ LPW+R A + LDTKYPYVCHAE+NAI+NKN+ADV+GCTIYVALFPC +CAKLIIQ+GI VVY+SDKY D P VASRR+L +AG++CR+ R ++ IDF Sbjct: 6 PRPAHLNGGTTRKREDYLEWPDYFMAVAFLSAQRSKDPSSQVGACIVNQENKIVGIGYNGMPNGCDDDLLPWSRCAEDRLDTKYPYVCHAELNAIMNKNSADVKGCTIYVALFPCNECAKLIIQAGIKEVVYLSDKYHDTPEMVASRRLLSMAGIQCRQFNPKRTKIVIDF 176
BLAST of jgi.p|Trimin1|164537 vs. uniprot
Match: W2PPZ7_PHYPN (CMP/dCMP-type deaminase domain-containing protein n=10 Tax=Phytophthora TaxID=4783 RepID=W2PPZ7_PHYPN) HSP 1 Score: 249 bits (637), Expect = 9.100e-80 Identity = 127/191 (66.49%), Postives = 147/191 (76.96%), Query Frame = 1 Query: 10 GEEATDELQQQEAKLEPQAVPAPTWAVGGA-RKDYLHWDDYFMSVAFLSAMRSKDPSTQVGACIVNPDKRIVGIGYNGFPAGCSDERLPWAR--AAPNELDTKYPYVCHAEMNAILNKNAADVRGCTIYVALFPCADCAKLIIQSGIAHVVYVSDKYRDAPAFVASRRMLDLAGVRCRRHVSARRRVTIDF 573 G+ + DE + + EP + T +VG R DYL WDDYFMSVAFLSAMRSKDPSTQVGACIVNP+++IVGIGYNGFP GC D+ LPWAR A + LDTKYPYVCHAEMNAILNKN+ DV+GCTIYVALFPC +CAKLIIQSGIA VVY SDKY FVASRR+LD+AGV+ +H ++ IDF Sbjct: 123 GDSSEDETKPE--TQEPATIQQVTASVGAQKRSDYLSWDDYFMSVAFLSAMRSKDPSTQVGACIVNPERKIVGIGYNGFPNGCGDDDLPWARESATSSPLDTKYPYVCHAEMNAILNKNSTDVKGCTIYVALFPCNECAKLIIQSGIARVVYCSDKYNSDWKFVASRRLLDMAGVQYTQHKLQLSKLVIDF 311
BLAST of jgi.p|Trimin1|164537 vs. uniprot
Match: A0A6P8HEW5_ACTTE (deoxycytidylate deaminase-like n=1 Tax=Actinia tenebrosa TaxID=6105 RepID=A0A6P8HEW5_ACTTE) HSP 1 Score: 246 bits (628), Expect = 9.950e-80 Identity = 110/162 (67.90%), Postives = 134/162 (82.72%), Query Frame = 1 Query: 100 RKDYLHWDDYFMSVAFLSAMRSKDPSTQVGACIVNPDKRIVGIGYNGFPAGCSDERLPWARAAPNELDTKYPYVCHAEMNAILNKNAADVRGCTIYVALFPCADCAKLIIQSGIAHVVYVSDKYRDAPAFVASRRMLDLAGVRCRRHVSARRRVTIDFGAAD 585 R DYL WDDYFM+VAFLSA RSKDPS+QVGACIVN +K+IVGIGYNG P GC D+ LPW R A NELDTKYPYVCHAEMNAILNKN+ DV+GC++YVALFPC +C K++IQ+G+ +VYVSDKY D PA VASRRMLD+AG++ R+ ++ + +DF + D Sbjct: 46 RTDYLPWDDYFMAVAFLSAQRSKDPSSQVGACIVNSEKKIVGIGYNGMPNGCCDDELPWDREAENELDTKYPYVCHAEMNAILNKNSTDVKGCSMYVALFPCNECTKIVIQAGLKEIVYVSDKYHDKPAMVASRRMLDMAGIKYRQFTPSKHNIVVDFTSID 207 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|164537 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_5197 ID=mRNA_5197|Name=jgi.p|Trimin1|164537|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=627bp|location=Sequence derived from alignment at Contig_32:359953..362845- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGCTGACAGGCGAGGAAGCGACTGACGAATTGCAGCAGCAGGAAGCGAAback to top protein sequence of jgi.p|Trimin1|164537 >Trimin1|164537|e_gw1.32.122.1 ID=Trimin1|164537|e_gw1.32.122.1|Name=jgi.p|Trimin1|164537|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=209bp MLTGEEATDELQQQEAKLEPQAVPAPTWAVGGARKDYLHWDDYFMSVAFLback to top mRNA from alignment at Contig_32:359953..362845- Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_5197 ID=mRNA_5197|Name=jgi.p|Trimin1|164537|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2893bp|location=Sequence derived from alignment at Contig_32:359953..362845- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_32:359953..362845- >mRNA_5197 ID=mRNA_5197|Name=jgi.p|Trimin1|164537|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=627bp|location=Sequence derived from alignment at Contig_32:359953..362845- (Tribonema minus UTEX_B_3156 )back to top |