mRNA_5197 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|164537
Unique NamemRNA_5197
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|164537 vs. uniprot
Match: A0A835YZN4_9STRA (Deoxycytidylate deaminase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZN4_9STRA)

HSP 1 Score: 423 bits (1087), Expect = 8.270e-150
Identity = 208/208 (100.00%), Postives = 208/208 (100.00%), Query Frame = 1
Query:    1 MLTGEEATDELQQQEAKLEPQAVPAPTWAVGGARKDYLHWDDYFMSVAFLSAMRSKDPSTQVGACIVNPDKRIVGIGYNGFPAGCSDERLPWARAAPNELDTKYPYVCHAEMNAILNKNAADVRGCTIYVALFPCADCAKLIIQSGIAHVVYVSDKYRDAPAFVASRRMLDLAGVRCRRHVSARRRVTIDFGAADAATAEEAGTDGTL 624
            MLTGEEATDELQQQEAKLEPQAVPAPTWAVGGARKDYLHWDDYFMSVAFLSAMRSKDPSTQVGACIVNPDKRIVGIGYNGFPAGCSDERLPWARAAPNELDTKYPYVCHAEMNAILNKNAADVRGCTIYVALFPCADCAKLIIQSGIAHVVYVSDKYRDAPAFVASRRMLDLAGVRCRRHVSARRRVTIDFGAADAATAEEAGTDGTL
Sbjct:    1 MLTGEEATDELQQQEAKLEPQAVPAPTWAVGGARKDYLHWDDYFMSVAFLSAMRSKDPSTQVGACIVNPDKRIVGIGYNGFPAGCSDERLPWARAAPNELDTKYPYVCHAEMNAILNKNAADVRGCTIYVALFPCADCAKLIIQSGIAHVVYVSDKYRDAPAFVASRRMLDLAGVRCRRHVSARRRVTIDFGAADAATAEEAGTDGTL 208          
BLAST of jgi.p|Trimin1|164537 vs. uniprot
Match: D8LJR7_ECTSI (CMP/dCMP-type deaminase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJR7_ECTSI)

HSP 1 Score: 263 bits (673), Expect = 1.190e-85
Identity = 123/158 (77.85%), Postives = 139/158 (87.97%), Query Frame = 1
Query:  100 RKDYLHWDDYFMSVAFLSAMRSKDPSTQVGACIVNPDKRIVGIGYNGFPAGCSDERLPWARAAPNELDTKYPYVCHAEMNAILNKNAADVRGCTIYVALFPCADCAKLIIQSGIAHVVYVSDKYRDAPAFVASRRMLDLAGVRCRRHVSARRRVTIDF 573
            R DYL WDDYFMSVAFLSAMRSKDPSTQVGACIVN DKRIVGIGYNGFP GCSD+ LPWAR A +ELDTKYPYVCHAEMNAILNKN+ADV+GC IYVALFPC +CAKLIIQSGI  VVY+SDKYR+  +  ASRR+ DL+GV+CR+H+  + ++TIDF
Sbjct:  122 RTDYLVWDDYFMSVAFLSAMRSKDPSTQVGACIVNEDKRIVGIGYNGFPMGCSDDDLPWARQADDELDTKYPYVCHAEMNAILNKNSADVKGCLIYVALFPCNECAKLIIQSGIREVVYLSDKYRETNSMKASRRLFDLSGVKCRQHIPKQDKITIDF 279          
BLAST of jgi.p|Trimin1|164537 vs. uniprot
Match: A0A7S2WUA8_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WUA8_9STRA)

HSP 1 Score: 259 bits (662), Expect = 1.200e-83
Identity = 128/192 (66.67%), Postives = 151/192 (78.65%), Query Frame = 1
Query:   25 DELQQQEAKLEPQAVPAPTWAVGGARK-DYLHWDDYFMSVAFLSAMRSKDPSTQVGACIVNPDKRIVGIGYNGFPAGCSDERLPWARAAPNELDTKYPYVCHAEMNAILNKNAADVRGCTIYVALFPCADCAKLIIQSGIAHVVYVSDKYRDAPAFVASRRMLDLAGVRCRRHVSARRRVTIDFGAADAATA 597
            DE  ++ A+++P A  A   +  G ++ DYL WDDYFMSVAFLSAMRSKDPSTQVGACIVNPD RIVGIGYNGFP GCSD++LPW+R   ++LDTKY YV HAE+NAILNKN+A V GC +YVALFPC +CAKLIIQSGI  V+Y+SDKY D P FVASRRML+LAGV+ R+H    R+V IDFG     TA
Sbjct:   56 DEAGRKRARVQPAAGAAAGGSSAGTKRPDYLSWDDYFMSVAFLSAMRSKDPSTQVGACIVNPDNRIVGIGYNGFPTGCSDDKLPWSREGGSKLDTKYMYVVHAEVNAILNKNSASVTGCRMYVALFPCNECAKLIIQSGITEVIYLSDKYHDLPEFVASRRMLNLAGVKFRQHSPKSRQVVIDFGVDKVVTA 247          
BLAST of jgi.p|Trimin1|164537 vs. uniprot
Match: A0A0D2VZ05_CAPO3 (Deoxycytidylate deaminase n=2 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2VZ05_CAPO3)

HSP 1 Score: 248 bits (634), Expect = 4.790e-81
Identity = 116/182 (63.74%), Postives = 141/182 (77.47%), Query Frame = 1
Query:   31 LQQQEAKLEPQAVPAPTWAVGGARKDYLHWDDYFMSVAFLSAMRSKDPSTQVGACIVNPDKRIVGIGYNGFPAGCSDERLPWARAAPNELDTKYPYVCHAEMNAILNKNAADVRGCTIYVALFPCADCAKLIIQSGIAHVVYVSDKYRDAPAFVASRRMLDLAGVRCRRHVSARRRVTIDFG 576
            L  Q +  EP  V     A    R+DYL W DYFM+VAFLSA RSKDPS+QVGACIVN + +IVGIGYNG P GC+D+ LPWAR A + LDTKY YVCHAE+NA+LNKNA+DV+GCTIYVALFPC +CAK+IIQSGI  V+Y SDKY D P FV SRR+ D+AG++ R+H+   +++TIDFG
Sbjct:    8 LNHQTSTFEPATVSDNAPAAVKKRQDYLPWADYFMAVAFLSAQRSKDPSSQVGACIVNQENKIVGIGYNGMPNGCNDDLLPWARTAESPLDTKYMYVCHAELNAVLNKNASDVKGCTIYVALFPCNECAKIIIQSGIKEVIYKSDKYHDRPEFVVSRRLFDMAGIKYRQHIPKMKQITIDFG 189          
BLAST of jgi.p|Trimin1|164537 vs. uniprot
Match: A0A8K1CQ50_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CQ50_PYTOL)

HSP 1 Score: 253 bits (646), Expect = 1.030e-80
Identity = 118/162 (72.84%), Postives = 138/162 (85.19%), Query Frame = 1
Query:  100 RKDYLHWDDYFMSVAFLSAMRSKDPSTQVGACIVNPDKRIVGIGYNGFPAGCSDERLPWARAAPNE--LDTKYPYVCHAEMNAILNKNAADVRGCTIYVALFPCADCAKLIIQSGIAHVVYVSDKYRDAPAFVASRRMLDLAGVRCRRHVSARRRVTIDFGA 579
            RKDY+ WDDYFMSVAFLSAMRSKDPSTQVGACIVNPDK+IVGIGYNGFP GCSD+ LPWAR +     L+TKYPYVCHAEMNAILNKN ++++GCTIY+ALFPC +CAKLI+QSGI H+VY+SDKY D   F+ASRR+LDLAGV  R+H   + ++ IDF A
Sbjct:  183 RKDYISWDDYFMSVAFLSAMRSKDPSTQVGACIVNPDKKIVGIGYNGFPNGCSDDILPWARESKTNDPLETKYPYVCHAEMNAILNKNTSELKGCTIYIALFPCNECAKLIVQSGIRHIVYLSDKYHDDWKFIASRRLLDLAGVEYRQHRMEKNKLIIDFNA 344          
BLAST of jgi.p|Trimin1|164537 vs. uniprot
Match: A0A833THJ4_PHYIN (Cytidine and deoxycytidylate deaminase zinc-binding region n=1 Tax=Phytophthora infestans TaxID=4787 RepID=A0A833THJ4_PHYIN)

HSP 1 Score: 251 bits (641), Expect = 2.060e-80
Identity = 126/192 (65.62%), Postives = 145/192 (75.52%), Query Frame = 1
Query:    4 LTGEEATDELQQQEAKLEPQAVPAPTWAVGGARKDYLHWDDYFMSVAFLSAMRSKDPSTQVGACIVNPDKRIVGIGYNGFPAGCSDERLPWAR--AAPNELDTKYPYVCHAEMNAILNKNAADVRGCTIYVALFPCADCAKLIIQSGIAHVVYVSDKYRDAPAFVASRRMLDLAGVRCRRHVSARRRVTIDF 573
            L G + + +  + E KLE Q            R DYL WDDYFMSVAFLSAMRSKDPSTQVGACIVNP+++IVGIGYNGFP GC D+ LPWAR  A  + LDTKYPYVCHAEMNAILNKN+ DV+GC+IYVALFPC +CAKLIIQSGIA VVY SDKY+    FVASRR+LD+AGV+  +H     +V IDF
Sbjct:  117 LDGNDVSWDASEDENKLETQKAVTTLPLAVQKRSDYLSWDDYFMSVAFLSAMRSKDPSTQVGACIVNPERKIVGIGYNGFPNGCGDDELPWARETATNSPLDTKYPYVCHAEMNAILNKNSTDVKGCSIYVALFPCNECAKLIIQSGIARVVYYSDKYKSDWKFVASRRLLDMAGVQYTQHKLQLSKVVIDF 308          
BLAST of jgi.p|Trimin1|164537 vs. uniprot
Match: H3G722_PHYRM (CMP/dCMP-type deaminase domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3G722_PHYRM)

HSP 1 Score: 245 bits (625), Expect = 4.520e-80
Identity = 118/160 (73.75%), Postives = 133/160 (83.12%), Query Frame = 1
Query:  100 RKDYLHWDDYFMSVAFLSAMRSKDPSTQVGACIVNPDKRIVGIGYNGFPAGCSDERLPWAR--AAPNELDTKYPYVCHAEMNAILNKNAADVRGCTIYVALFPCADCAKLIIQSGIAHVVYVSDKYRDAPAFVASRRMLDLAGVRCRRHVSARRRVTIDF 573
            R DYL WDDYFMSVAFLSAMRSKDPSTQVGACIV+P+++IVGIGYNGFP GC D+ LPWAR  A  + LDTKYPYVCHAEMNAILNKN+ DV+GCTIYVALFPC +CAKLIIQSGI+ VVY SDKY     FVASRR+LD+AGV+  +H     +V IDF
Sbjct:    3 RSDYLSWDDYFMSVAFLSAMRSKDPSTQVGACIVSPERKIVGIGYNGFPNGCGDDELPWARESATDSPLDTKYPYVCHAEMNAILNKNSTDVKGCTIYVALFPCNECAKLIIQSGISRVVYCSDKYNHDWKFVASRRLLDMAGVKYSQHKLQSAKVVIDF 162          
BLAST of jgi.p|Trimin1|164537 vs. uniprot
Match: A0A6G0JC42_LARCR (Deoxycytidylate deaminase n=2 Tax=Larimichthys crocea TaxID=215358 RepID=A0A6G0JC42_LARCR)

HSP 1 Score: 245 bits (626), Expect = 7.380e-80
Identity = 114/171 (66.67%), Postives = 136/171 (79.53%), Query Frame = 1
Query:   70 PAPTWAVGGA---RKDYLHWDDYFMSVAFLSAMRSKDPSTQVGACIVNPDKRIVGIGYNGFPAGCSDERLPWARAAPNELDTKYPYVCHAEMNAILNKNAADVRGCTIYVALFPCADCAKLIIQSGIAHVVYVSDKYRDAPAFVASRRMLDLAGVRCRRHVSARRRVTIDF 573
            P P    GG    R+DYL W DYFM+VAFLSA RSKDPS+QVGACIVN + +IVGIGYNG P GC D+ LPW+R A + LDTKYPYVCHAE+NAI+NKN+ADV+GCTIYVALFPC +CAKLIIQ+GI  VVY+SDKY D P  VASRR+L +AG++CR+    R ++ IDF
Sbjct:    6 PRPAHLNGGTTRKREDYLEWPDYFMAVAFLSAQRSKDPSSQVGACIVNQENKIVGIGYNGMPNGCDDDLLPWSRCAEDRLDTKYPYVCHAELNAIMNKNSADVKGCTIYVALFPCNECAKLIIQAGIKEVVYLSDKYHDTPEMVASRRLLSMAGIQCRQFNPKRTKIVIDF 176          
BLAST of jgi.p|Trimin1|164537 vs. uniprot
Match: W2PPZ7_PHYPN (CMP/dCMP-type deaminase domain-containing protein n=10 Tax=Phytophthora TaxID=4783 RepID=W2PPZ7_PHYPN)

HSP 1 Score: 249 bits (637), Expect = 9.100e-80
Identity = 127/191 (66.49%), Postives = 147/191 (76.96%), Query Frame = 1
Query:   10 GEEATDELQQQEAKLEPQAVPAPTWAVGGA-RKDYLHWDDYFMSVAFLSAMRSKDPSTQVGACIVNPDKRIVGIGYNGFPAGCSDERLPWAR--AAPNELDTKYPYVCHAEMNAILNKNAADVRGCTIYVALFPCADCAKLIIQSGIAHVVYVSDKYRDAPAFVASRRMLDLAGVRCRRHVSARRRVTIDF 573
            G+ + DE + +    EP  +   T +VG   R DYL WDDYFMSVAFLSAMRSKDPSTQVGACIVNP+++IVGIGYNGFP GC D+ LPWAR  A  + LDTKYPYVCHAEMNAILNKN+ DV+GCTIYVALFPC +CAKLIIQSGIA VVY SDKY     FVASRR+LD+AGV+  +H     ++ IDF
Sbjct:  123 GDSSEDETKPE--TQEPATIQQVTASVGAQKRSDYLSWDDYFMSVAFLSAMRSKDPSTQVGACIVNPERKIVGIGYNGFPNGCGDDDLPWARESATSSPLDTKYPYVCHAEMNAILNKNSTDVKGCTIYVALFPCNECAKLIIQSGIARVVYCSDKYNSDWKFVASRRLLDMAGVQYTQHKLQLSKLVIDF 311          
BLAST of jgi.p|Trimin1|164537 vs. uniprot
Match: A0A6P8HEW5_ACTTE (deoxycytidylate deaminase-like n=1 Tax=Actinia tenebrosa TaxID=6105 RepID=A0A6P8HEW5_ACTTE)

HSP 1 Score: 246 bits (628), Expect = 9.950e-80
Identity = 110/162 (67.90%), Postives = 134/162 (82.72%), Query Frame = 1
Query:  100 RKDYLHWDDYFMSVAFLSAMRSKDPSTQVGACIVNPDKRIVGIGYNGFPAGCSDERLPWARAAPNELDTKYPYVCHAEMNAILNKNAADVRGCTIYVALFPCADCAKLIIQSGIAHVVYVSDKYRDAPAFVASRRMLDLAGVRCRRHVSARRRVTIDFGAAD 585
            R DYL WDDYFM+VAFLSA RSKDPS+QVGACIVN +K+IVGIGYNG P GC D+ LPW R A NELDTKYPYVCHAEMNAILNKN+ DV+GC++YVALFPC +C K++IQ+G+  +VYVSDKY D PA VASRRMLD+AG++ R+   ++  + +DF + D
Sbjct:   46 RTDYLPWDDYFMAVAFLSAQRSKDPSSQVGACIVNSEKKIVGIGYNGMPNGCCDDELPWDREAENELDTKYPYVCHAEMNAILNKNSTDVKGCSMYVALFPCNECTKIVIQAGLKEIVYVSDKYHDKPAMVASRRMLDMAGIKYRQFTPSKHNIVVDFTSID 207          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|164537 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YZN4_9STRA8.270e-150100.00Deoxycytidylate deaminase n=1 Tax=Tribonema minus ... [more]
D8LJR7_ECTSI1.190e-8577.85CMP/dCMP-type deaminase domain-containing protein ... [more]
A0A7S2WUA8_9STRA1.200e-8366.67Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A0D2VZ05_CAPO34.790e-8163.74Deoxycytidylate deaminase n=2 Tax=Capsaspora owcza... [more]
A0A8K1CQ50_PYTOL1.030e-8072.84Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A833THJ4_PHYIN2.060e-8065.63Cytidine and deoxycytidylate deaminase zinc-bindin... [more]
H3G722_PHYRM4.520e-8073.75CMP/dCMP-type deaminase domain-containing protein ... [more]
A0A6G0JC42_LARCR7.380e-8066.67Deoxycytidylate deaminase n=2 Tax=Larimichthys cro... [more]
W2PPZ7_PHYPN9.100e-8066.49CMP/dCMP-type deaminase domain-containing protein ... [more]
A0A6P8HEW5_ACTTE9.950e-8067.90deoxycytidylate deaminase-like n=1 Tax=Actinia ten... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_32contigContig_32:359953..362845 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|164537|e_gw1.32.122.1
BRITEko00000,ko00001,ko00002,ko01000,ko02044
KEGG rclassRC00074
KEGG ReactionR01663
KEGG ModuleM00429
KEGG Pathwayko00240,ko01100,map00240,map01100
KEGG koko:K01493
EC3.5.4.12
GOsGO:0003674,GO:0003824,GO:0004132,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006220,GO:0006221,GO:0006226,GO:0006231,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009129,GO:0009130,GO:0009157,GO:0009162,GO:0009165,GO:0009176,GO:0009177,GO:0009219,GO:0009221,GO:0009262,GO:0009263,GO:0009265,GO:0009394,GO:0009987,GO:0015949,GO:0016787,GO:0016810,GO:0016814,GO:0018130,GO:0019239,GO:0019438,GO:0019637,GO:0019692,GO:0034641,GO:0034654,GO:0042802,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046073,GO:0046078,GO:0046385,GO:0046483,GO:0055086,GO:0071704,GO:0072527,GO:0072528,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576
Preferred nameDCTD
DescriptiondCMP deaminase activity
COG categoryF
Max annot lvl2759|Eukaryota
EggNOG OGsCOG2131@1|root,KOG3127@2759|Eukaryota
Evalue1.95e-86
Seed ortholog2880.D8LJR7
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionDeoxycytidylate deaminase-related
Ec32 orthologEc-12_003010.1
TranscriptId164859
TrackFilteredModels1
ProteinId164537
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|164537gene_5197Tribonema minus UTEX_B_3156 geneContig_32 359953..362845 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|164537Trimin1|164537|e_gw1.32.122.1Tribonema minus UTEX_B_3156 polypeptideContig_32 359953..362845 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_5197_3exon_5197_3Tribonema minus UTEX_B_3156 exonContig_32 359953..360396 -
exon_5197_2exon_5197_2Tribonema minus UTEX_B_3156 exonContig_32 361643..361705 -
exon_5197_1exon_5197_1Tribonema minus UTEX_B_3156 exonContig_32 362726..362845 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_5197CDS_5197Tribonema minus UTEX_B_3156 CDSContig_32 362726..362845 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_5197 ID=mRNA_5197|Name=jgi.p|Trimin1|164537|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=627bp|location=Sequence derived from alignment at Contig_32:359953..362845- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCTGACAGGCGAGGAAGCGACTGACGAATTGCAGCAGCAGGAAGCGAA
GCTGGAGCCTCAGGCTGTCCCAGCACCAACCTGGGCAGTAGGTGGTGCGA
GAAAAGATTACTTGCACTGGGACGACTACTTCATGTCGGTGGCATTCCTC
AGCGCGATGCGGTCCAAGGACCCCAGCACGCAGGTCGGCGCGTGCATCGT
GAACCCCGACAAGCGCATCGTAGGCATCGGCTACAACGGCTTCCCCGCGG
GCTGCAGCGACGAGCGCCTGCCGTGGGCGCGCGCGGCGCCGAACGAGCTC
GACACCAAGTACCCGTACGTGTGCCACGCGGAGATGAACGCGATCCTCAA
CAAGAACGCCGCGGACGTGCGCGGCTGCACGATCTACGTCGCGCTGTTCC
CCTGCGCGGACTGCGCCAAGCTCATCATCCAGAGCGGCATCGCGCACGTC
GTGTACGTGAGCGACAAGTACCGCGACGCGCCCGCGTTCGTCGCATCGCG
CCGCATGCTCGACCTCGCCGGCGTGCGCTGCCGCCGCCACGTGTCGGCGC
GGCGGCGCGTCACGATAGACTTTGGCGCCGCGGACGCCGCCACCGCGGAG
GAGGCGGGGACCGATGGCACGCTGTAG
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protein sequence of jgi.p|Trimin1|164537

>Trimin1|164537|e_gw1.32.122.1 ID=Trimin1|164537|e_gw1.32.122.1|Name=jgi.p|Trimin1|164537|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=209bp
MLTGEEATDELQQQEAKLEPQAVPAPTWAVGGARKDYLHWDDYFMSVAFL
SAMRSKDPSTQVGACIVNPDKRIVGIGYNGFPAGCSDERLPWARAAPNEL
DTKYPYVCHAEMNAILNKNAADVRGCTIYVALFPCADCAKLIIQSGIAHV
VYVSDKYRDAPAFVASRRMLDLAGVRCRRHVSARRRVTIDFGAADAATAE
EAGTDGTL*
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mRNA from alignment at Contig_32:359953..362845-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5197 ID=mRNA_5197|Name=jgi.p|Trimin1|164537|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2893bp|location=Sequence derived from alignment at Contig_32:359953..362845- (Tribonema minus UTEX_B_3156 )
ATGCTGACAGGCGAGGAAGCGACTGACGAATTGCAGCAGCAGGAAGCGAA GCTGGAGCCTCAGGCTGTCCCAGCACCAACCTGGGCAGTAGGTGGTGCGA GAAAAGATTACTTGCACTGGGTGAGCATCAAAGGATCCGTCGGCATGCGC ACATGCTAATTGCATATTGGAATACAACCAAATATAGCCACCAAATTTAG ATTGGTGGCAGCGTCCATGCTCTCTCCTTATGGCAGGAAGAGCCATGAGA CTGTTTGTAGATTGAGTCTCAGTTTGTAGATGGTCTCTCGAAGTCCGGCT CAAGTGTTGAAGTTCATCGTCACCAGCCTTTGTTAAAGATTTGCTTGCCG GCGTTAGCACTGCTGAACTACTTACAACGTTAATGCTGAGTAGGTTAATG CAAGCACACACGTCTTATTGGAGTAATGCTGGCCTTCACATGCTTTCCGT GCCACAAAACAGGGCCGCTGTGGAGAATGAAGATGCAACGCCTCCTGTAT GTTGAGCAAGGTGAAGTTTCATTTATGACGGTGGCGTGTTCATTGGGTTC ATGCACAGACGACTGGTACACTATGCTATAAGGTGTACTGCTGTCATCGG GACCTTGTGACCTGAAAGCCACAGCCAGTTCACGATTCACTGCCCGTTGA ATGTTGTGTGAAGTGTCATCGCACCTCAGCATCGCAGCCATGCTCAAAGT GACGGAGGTGGTGTGCTGTCCCGTCCAGCATATGAAATCACAGCCACGCT CTGCGGCTGAGCACAGCGCGTGCCGCCACGGTATGCAGCGCGCGCAACAC CACACAACTGCGCGCCATGCCAAGATGCACCTCCGCAGCGACAATAGGGG CCTCAGCAGCAACGTCAACTTGATGCGTTGTGTGCCATGCTCAGCCGCCC GAAATTGGTGTTTGTAATGGTGCCATGCGCCATCTGCTTGAGTGATTCAC CAAGAGCCAGCGCGTGAGGCTGTCCGGCAGACTGTTTACTAGTAGTTATG CAAGCAACGTGGCTGTGTAAGCATGCAATGATGGGTCAACGACGGGCATG CACACTACGTTGTCGCATCCTCCGTGTAATTTATTGCCGTATACCTCATT GACCGTCGTGCACCTTGCCTCTCGCGGCGCCCCCTCGCAGGACGACTACT TCATGTCGGTGGCATTCCTCAGCGCGATGCGGTCCAAGGACCCCAGCACG CAGGTATGTCGGCGCGCGCCTGACCGTAACCCTAGCCCTAGCCCTAACCC TAACCCCAACCGTAACCCTAAGAGAGCAGCTGACACGTCACTCACAGTGC TCAGCCAGCTGCACTTGAAGTGACCGCAATTCCCCTTCAAGCCAGGTGAA CACGACTCGTGTGGACGATACACTGTAACTGTATGTAGCGAACGACACCG ATAATGACCCTCTAAGGCGGTCTTGTAGAGCGTGGGCCGTGAGTGGTGCC AACGGCGGTGCTGTGCGCGCCACACGCAGCGGACAGCGCGGCAGTCAGCC ATCAAAGGCACGCCGTAGTACAGCGCCGAAGCATCAGGCAGCAGCACCTT GCCATGCCGATGTGCGTTGCTTCGGCATTTACATGCACATGCGCGCACAC GCTTGCTGCAATGTGATCAGCCAACGTTGCACTTGCAGTGGCGCGCCTAA CTTTAACTGCCTCTCGACGCACAGCAGACAAGCGCAGTGGTGTCGTACTG CAGCGGAATGTCTTGTCGGCACTGCGGCGCAGGTTGCCATGACGCCTGGC CCGGTTTCATCATGACCGGTAGACATTTGAATAAAGTGGACATGAGTGTG CAAAATACTTTTTCAACTGCGAGACAGTTGAGGAGATGAGAATGGCAACG AGACAATCCCTCAACGAACGGTAACCTATTATTTCACGGGAACGCCGGGG GCCTGTGCGCTTACGAGCACGGGTGCTGAGCACAGAAGCAGGCACAGAAC TGCTGTGTTTAATGGCAAGGCGCTGTCTGCTGTATGGCGGCCGTGCCTTT CTGCTCAGCACAGGCACAGAACTGCTGTGTTTCATGGCACGGTGCTGTCT GTTGCATGGCGACCGTGCCTCTCTGTCCATCTGATGCAACGCCATCAGTG CAAGAGCTGTTGTCAAACGCCAGCACCCTGCGGCAGATGCGGCTCTGTGT GCCATGCGGCAGCTCCACCGCGCGTATCGCATGTTCGGCACAGGCATCGT TGATATGCATTCAAGATTTTTAGACTCATGTGTGCGCCGCCGCTGCCGCT AGCACCTGCACGCAATTCAGCTCTGCGGCGGGCGCTGAACGCCGCCGGGC CCCGCTGCGTTGGGTGATGGCGCGCCGTGTTTGCGTGCAGGCCGGCACGC GCATGCGCATCTCGCACCCCACACAGCCGTGTCATGGATCGCATTTGCTC GTGCTCATGTCGCGCCCGTGACGTGGCCCGCAACCCTCGCCACGCGCAGG TCGGCGCGTGCATCGTGAACCCCGACAAGCGCATCGTAGGCATCGGCTAC AACGGCTTCCCCGCGGGCTGCAGCGACGAGCGCCTGCCGTGGGCGCGCGC GGCGCCGAACGAGCTCGACACCAAGTACCCGTACGTGTGCCACGCGGAGA TGAACGCGATCCTCAACAAGAACGCCGCGGACGTGCGCGGCTGCACGATC TACGTCGCGCTGTTCCCCTGCGCGGACTGCGCCAAGCTCATCATCCAGAG CGGCATCGCGCACGTCGTGTACGTGAGCGACAAGTACCGCGACGCGCCCG CGTTCGTCGCATCGCGCCGCATGCTCGACCTCGCCGGCGTGCGCTGCCGC CGCCACGTGTCGGCGCGGCGGCGCGTCACGATAGACTTTGGCGCCGCGGA CGCCGCCACCGCGGAGGAGGCGGGGACCGATGGCACGCTGTAG
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Coding sequence (CDS) from alignment at Contig_32:359953..362845-

>mRNA_5197 ID=mRNA_5197|Name=jgi.p|Trimin1|164537|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=627bp|location=Sequence derived from alignment at Contig_32:359953..362845- (Tribonema minus UTEX_B_3156 )
ATGCTGACAGGCGAGGAAGCGACTGACGAATTGCAGCAGCAGGAAGCGAA
GCTGGAGCCTCAGGCTGTCCCAGCACCAACCTGGGCAGTAGGTGGTGCGA
GAAAAGATTACTTGCACTGGGACGACTACTTCATGTCGGTGGCATTCCTC
AGCGCGATGCGGTCCAAGGACCCCAGCACGCAGGTCGGCGCGTGCATCGT
GAACCCCGACAAGCGCATCGTAGGCATCGGCTACAACGGCTTCCCCGCGG
GCTGCAGCGACGAGCGCCTGCCGTGGGCGCGCGCGGCGCCGAACGAGCTC
GACACCAAGTACCCGTACGTGTGCCACGCGGAGATGAACGCGATCCTCAA
CAAGAACGCCGCGGACGTGCGCGGCTGCACGATCTACGTCGCGCTGTTCC
CCTGCGCGGACTGCGCCAAGCTCATCATCCAGAGCGGCATCGCGCACGTC
GTGTACGTGAGCGACAAGTACCGCGACGCGCCCGCGTTCGTCGCATCGCG
CCGCATGCTCGACCTCGCCGGCGTGCGCTGCCGCCGCCACGTGTCGGCGC
GGCGGCGCGTCACGATAGACTTTGGCGCCGCGGACGCCGCCACCGCGGAG
GAGGCGGGGACCGATGGCACGCTGTAG
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