mRNA_5139 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|174772
Unique NamemRNA_5139
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
[Close]
BLAST of jgi.p|Trimin1|174772 vs. uniprot
Match: A0A835ZCT2_9STRA (Kinase-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCT2_9STRA)

HSP 1 Score: 734 bits (1896), Expect = 2.470e-268
Identity = 351/351 (100.00%), Postives = 351/351 (100.00%), Query Frame = 1 
Query:    1 MSVNDYVVSGRLGAGVTAQVYECHSPQYGKAALKVIEKSTGRESLHRELMALQALKDHSNIISLFSIIDDQKSDITWLVEEMAERGSLVGVMMSGMECQRMGYEIVCGLAHMHSKGFIHRDVKPANILRAANGTSKLADFGCCVRMEEGGDTARNKHFMGTPAFMAPETFKDGVVTPAVDVWSFASTLHYVVYGTLPFDTRVRGGTKGKNAAVDDAAIEDSIMFYEPYLGTNARPRHMKNMEKRWHSDDVTKFNHFCKMGLHKNPTHRCTLGQWRQHEWLYFYYIPLVAVEMPCCRCVALFSLLDVACKACTPHPAPHITPNKAPASDCPPHTSRDTKQSCKTLPPQTDPS 1053
            MSVNDYVVSGRLGAGVTAQVYECHSPQYGKAALKVIEKSTGRESLHRELMALQALKDHSNIISLFSIIDDQKSDITWLVEEMAERGSLVGVMMSGMECQRMGYEIVCGLAHMHSKGFIHRDVKPANILRAANGTSKLADFGCCVRMEEGGDTARNKHFMGTPAFMAPETFKDGVVTPAVDVWSFASTLHYVVYGTLPFDTRVRGGTKGKNAAVDDAAIEDSIMFYEPYLGTNARPRHMKNMEKRWHSDDVTKFNHFCKMGLHKNPTHRCTLGQWRQHEWLYFYYIPLVAVEMPCCRCVALFSLLDVACKACTPHPAPHITPNKAPASDCPPHTSRDTKQSCKTLPPQTDPS
Sbjct:    1 MSVNDYVVSGRLGAGVTAQVYECHSPQYGKAALKVIEKSTGRESLHRELMALQALKDHSNIISLFSIIDDQKSDITWLVEEMAERGSLVGVMMSGMECQRMGYEIVCGLAHMHSKGFIHRDVKPANILRAANGTSKLADFGCCVRMEEGGDTARNKHFMGTPAFMAPETFKDGVVTPAVDVWSFASTLHYVVYGTLPFDTRVRGGTKGKNAAVDDAAIEDSIMFYEPYLGTNARPRHMKNMEKRWHSDDVTKFNHFCKMGLHKNPTHRCTLGQWRQHEWLYFYYIPLVAVEMPCCRCVALFSLLDVACKACTPHPAPHITPNKAPASDCPPHTSRDTKQSCKTLPPQTDPS 351
[Close]
BLAST of jgi.p|Trimin1|174772 vs. uniprot
Match: A0A836CFM8_9STRA (Kinase-like domain-containing protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFM8_9STRA)

HSP 1 Score: 429 bits (1102), Expect = 1.080e-147
Identity = 202/282 (71.63%), Postives = 239/282 (84.75%), Query Frame = 1 
Query:    1 MSVNDYVVSGRLGAGVTAQVYECHSPQYGKAALKVIEKSTGRESLHRELMALQALKDHSNIISLFSIIDDQKSDITWLVEEMAERGSLVGVMMSGMECQRMGYEIVCGLAHMHSKGFIHRDVKPANILRAANGTSKLADFGCCVRMEEGGDTARNKHFMGTPAFMAPETFKDGVVTPAVDVWSFASTLHYVVYGTLPFDTRVRGGTKGKNAAVDDAAIEDSIMFYEPYLGTNARPRHMKNMEKRWHSDDVTKFNHFCKMGLHKNPTHRCTLGQWRQHEWLYF 846
            + VN++V+SGRLG G TAQV+ECHSPQ+GKAALK++EK+TG ESLHRE+MALQALK+HSNIISL++IIDD  SDIT LV EMAERGSLVGVM+SG+ECQR+  +IV GL HMHSKGF+H DVKPANI+R A G SKLADFGCCVRM EGG  A++++FMGTPAFMAPE FKDG+VTPAVDVWS ASTLHYVVYGTLPF++ +RGG+  +    ++  IEDSIM+ EP LG N R R++ N+E  WHSDDVTKFNHFCK GL K+P  R TLGQWRQHEWLY+
Sbjct:   48 VGVNEHVISGRLGRGATAQVFECHSPQFGKAALKILEKTTGCESLHREIMALQALKNHSNIISLYTIIDDPTSDITCLVVEMAERGSLVGVMVSGLECQRVTSDIVSGLMHMHSKGFLHCDVKPANIVRTAEGVSKLADFGCCVRMAEGGSEAQHRYFMGTPAFMAPEMFKDGIVTPAVDVWSLASTLHYVVYGTLPFNSHLRGGSARR--VREEGDIEDSIMYCEPSLGNNVRSRYLTNIESNWHSDDVTKFNHFCKTGLQKSPARRSTLGQWRQHEWLYY 327
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BLAST of jgi.p|Trimin1|174772 vs. uniprot
Match: A0A835Z3R1_9STRA (Kinase-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3R1_9STRA)

HSP 1 Score: 275 bits (704), Expect = 2.790e-88
Identity = 131/279 (46.95%), Postives = 189/279 (67.74%), Query Frame = 1 
Query:    7 VNDYVVSGRLGAGVTAQVYECHSPQYGKAALKVIEKSTGRESLHRELMALQALKDHSNIISLFSIIDDQKSDITWLVEEMAERGSLVGVMM-SGMECQRMGYEIVCGLAHMHSKGFIHRDVKPANILRAANGTSKLADFGCCVRMEEGGDTARNKHFMGTPAFMAPETFKDGVVTPAVDVWSFASTLHYVVYGTLPFDTRVRGGTKGKNAAVDDAAIEDSIMFYEPYLGTNARPRHMKNMEKRWHSDDVTKFNHFCKMGLHKNPTHRCTLGQWRQHEWL 840
            VN++ ++G +G G TA+V+EC S  +GK A+K++ KS  +ESLHRE+MALQ LK H NI++L  +I+D + D+ +LVEE+A +GSLVGV+M + ++CQ +  + +  L +MHS+G++HRDVKPANIL  ++G +KL DFGC +R+    D      FMGTPAFMAPE F  G++T A+DVWS   T+H+VVYG+LPF      G +G         +  S+M+  P +GT   PR +K M + W +DD+++F HFCK G  K+P  R TL +  QH+WL
Sbjct:    7 VNEFSITGHMGTGSTARVFECSSDVHGKVAMKMVYKSKAKESLHREIMALQDLK-HKNIVNLLVVINDPRLDVAFLVEELATKGSLVGVVMKTSLQCQHVASDTMSALTYMHSRGYVHRDVKPANILIMSDGKAKLTDFGCAIRVS---DCLTRAKFMGTPAFMAPELFSTGIITTAIDVWSLVGTMHHVVYGSLPF------GAEG-------LVLSQSVMYSSPAMGTTMSPRCLKMMNENWTNDDISRFKHFCKEGFRKDPDKRITLEKLAQHDWL 268
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BLAST of jgi.p|Trimin1|174772 vs. uniprot
Match: A0A836CE44_9STRA (Kinase-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CE44_9STRA)

HSP 1 Score: 135 bits (341), Expect = 2.460e-33
Identity = 100/278 (35.97%), Postives = 129/278 (46.40%), Query Frame = 1 
Query:   16 YVVSGRLGAGVTAQVYECHSPQYGKAALKVIEKSTGRESLHRELMALQALKDHSNIISLFSIIDDQKSDITWL-VEEMAERGSLVGVMMSGMECQRMGYEIVCGLAHMHSKGFIHRDVKPANILRAANGTSKLADFGCCVRMEEGGDTARNKHFMGTPAFMAPETFKD--GVVTPAVDVWSFASTLHYVVYGTLPFDTRVRGGTKGKNAAVDDAAIEDSIMFYEPYLGTNARPRHMKNMEKRWHSDDVTKFNHFCKMGLHKNPTHRCTLGQWRQHEWL 840
            Y V  R+G G T  VY          ALKV+       +  RE+ ALQAL+ H NI+ +      Q+    +L V E+AE GSL GV++   E      E+   L  +H +G+ H DVKP NILR A+GT KL DFGCC R E   +T       GTPAFM PE F+      T AVD W  A+T   +V G  PF    RG             + DSI++    L            E+   +DD     +F   GL K P  R ++ Q  QH WL
Sbjct:   53 YRVVRRIGGGGTGSVYAARDEYGADVALKVVANDAA--AYGREVRALQALQ-HRNIVQMVDTQGGQEGKGPYLIVMELAEWGSLAGVVLRSAEAAAYVAEVASALQFIHERGYAHGDVKPGNILRFADGTVKLCDFGCCERPEAAAETRGRPR--GTPAFMPPEAFQGTGSGWTAAVDSWGLAATSFCLVRGRPPFSVAGRG-------------LFDSILYGRANLTACQG-------ERGNDADDEADLANFVAWGLTKAPRGRPSMEQVLQHPWL 305
[Close]
BLAST of jgi.p|Trimin1|174772 vs. uniprot
Match: A0A835YXT3_9STRA (Kinase-like domain-containing protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXT3_9STRA)

HSP 1 Score: 127 bits (318), Expect = 3.420e-30
Identity = 75/200 (37.50%), Postives = 114/200 (57.00%), Query Frame = 1 
Query:    4 SVNDYVVSGRLGAGVTAQVYECHSPQYGKAALKVIEKSTGRESLHRELMALQALKDHSNIISLFSIIDDQ---KSDITWLVEEMAERGSLVGVMMSGMECQRMGYEIVCGLAHMHSKGFIHRDVKPANILRAANGTSKLADFGCCVRMEEGGDTARNKHFMGTPAFMAPETFKDGVVTPAVDVWSFASTLHYVVYGTLPF 594
            +V  + +  RLG+G TA VYE  + +    ALKV+ +   R +  REL  L+ ++ H  I+ LF   +++   K+    +V E+   GSL G+++ G E  +   ++   L ++H KG+IH D+KPAN+LR   G  K+ DFGCC ++    DT   +   GTPAFM+PE ++    T A DVWS A+T+  VV G  PF
Sbjct:   13 TVRGFGIIKRLGSGATATVYEACTEKNEVVALKVVMRD--RNTYMRELRVLKEMR-HDRIVKLFRSEENESYRKTGPFLIVMELEPWGSLSGLVLWGSEAAQCMRDVAIALQYIHRKGYIHGDIKPANLLRDGCGRIKVCDFGCCKKIATDDDTVFRRP-QGTPAFMSPEAYRGHGGTTACDVWSLAATIFCVVRGHPPF 208
[Close]
BLAST of jgi.p|Trimin1|174772 vs. uniprot
Match: A0A1Y1YIT7_9FUNG (Kinase-like protein n=1 Tax=Basidiobolus meristosporus CBS 931.73 TaxID=1314790 RepID=A0A1Y1YIT7_9FUNG)

HSP 1 Score: 117 bits (294), Expect = 3.090e-26
Identity = 81/261 (31.03%), Postives = 125/261 (47.89%), Query Frame = 1 
Query:   88 KAALKVIEKSTGRESLHRELMALQALKDHSNIISLFSIIDDQKSDITWLVEEMAERGSLVGVMMSGM-------ECQRMGYEIVCGLAHMHSKGFIHRDVKPANILRAANGTSKLADFGCCVRMEEGGDTARNKHFMGTPAFMAPETFK---DGVVTPAVDVWSFASTLHYVVYGTLPFDTRVRGGTKGKNAAVDDAAIEDSIMFYEPYLGTNARPRHMKNMEKRWHSDDVTKFNHFCKMGLHKNPTHRCTLGQWRQHEWL 840
            KAA K+ E++     L R  +A+     H NI++L  ++D++  D  ++V EM ++G+++ V +          +C+    ++V G  ++H  G +HRD+KP N+L AA+ T K+ DFG      +G D  R K   G+PAFMAPE      +G+   A D+WS   TL+ + +GTLPF           N+ V+   I DS+   E  +   A P     +EK                 L KNP  R  +   R H WL
Sbjct:   91 KAAQKLEEENGNPLDLVRSEVAILKKLSHPNIVNLREVLDNKNDDAIYMVFEMCKKGAVMDVQLGKTVEPYTEDKCRHYFRQMVLGFEYLHENGIVHRDIKPDNLLIAADDTLKIVDFGVSEMFVKGDD--RMKKSAGSPAFMAPELCSGSSNGISGRATDIWSMGVTLYCLAFGTLPFSA---------NSIVE---IYDSVKNQELKIPDTASPELKDLLEKL----------------LDKNPETRIHMDAIRIHPWL 321
[Close]
BLAST of jgi.p|Trimin1|174772 vs. uniprot
Match: A0A497E989_9BACT (Non-specific serine/threonine protein kinase n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A497E989_9BACT)

HSP 1 Score: 117 bits (292), Expect = 3.900e-25
Identity = 71/204 (34.80%), Postives = 112/204 (54.90%), Query Frame = 1 
Query:   16 YVVSGRLGAGVTAQVYECHSPQYG-KAALKVIE----KSTGRESLHRELMALQALKDHSNIISLFSIIDDQKSDITWLVEEMAERGSLVGV-----MMSGMECQRMGYEIVCGLAHMHSKGFIHRDVKPANILRAANGTSKLADFGCCVRMEEGGDTARNKHFMGTPAFMAPETFKDGVVTPAVDVWSFASTLHYVVYGTLPFD 597
            ++++ RLG+G T  V+       G K A+K++     +   RE L RE+ A  A   H+N++++F + +D  S   +L  E+ E   L         +   E   +G ++  GLAH+H+KG +HRDVKP NIL A +GT+K+ D G    + +GG        +GTPA+MAPE  + G +TPA DV++   TL   + G +PF+
Sbjct:   38 FLINKRLGSGATGTVFSALDTTVGQKVAVKLLRPDLSEEISRERLRREVRA--ARPGHNNVVTVFDLHED--SGRVFLSMELVEGRCLRDERGRRDQLPWHEVVGIGRQVAAGLAHLHNKGLVHRDVKPGNILIANDGTAKVCDMGLARPVRQGGTVTETAMVVGTPAYMAPEQARAGDLTPASDVYALGLTLFRSLTGHVPFE 237
[Close]
BLAST of jgi.p|Trimin1|174772 vs. uniprot
Match: A0A523VB14_9CHLR (Non-specific serine/threonine protein kinase n=1 Tax=Anaerolineales bacterium TaxID=2073117 RepID=A0A523VB14_9CHLR)

HSP 1 Score: 113 bits (282), Expect = 8.980e-25
Identity = 67/206 (32.52%), Postives = 108/206 (52.43%), Query Frame = 1 
Query:    4 SVNDYVVSGRLGAGVTAQVYECHSPQYGK-AALKVIEKSTGRESLHRELMALQALK----DHSNIISLFSIIDDQKSDITWLVEEMAERGSLVGVMMSGMECQ---RMGYEIVCGLAHMHSKGFIHRDVKPANILRAANGTSKLADFGCCVRMEEGGDTARNKHFMGTPAFMAPETFKDGVVTPAVDVWSFASTLHYVVYGTLPFD 597
            ++ +Y +   +  G TA VY+ + P+  +  A+KV+     +E   RE  A +A      DH NI+ ++    D++ D+ ++V +  + GSL  +M   M      ++  ++   L+H HS+G IHRDVKPANIL        LADFG    +EE     +    MGTPA++APE      V    D++S A+TL  ++ G +PF+
Sbjct:    9 TLGEYRIVEHIARGATANVYKAYQPKLNRNVAIKVLSPLYAKEEDFRERFAREAKAIAQLDHPNIVPVYDF--DRQGDLVYIVVQYVDTGSLADLMGERMPLDLAVKILDQVASALSHAHSRGIIHRDVKPANILLGQEDWVLLADFGLAKMLEESATITQPGSGMGTPAYIAPEQATGESVDARSDIYSLAATLFQMITGRVPFE 212
[Close]
BLAST of jgi.p|Trimin1|174772 vs. uniprot
Match: A0A835ZIS8_9STRA (Uncharacterized protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZIS8_9STRA)

HSP 1 Score: 110 bits (276), Expect = 3.090e-24
Identity = 50/50 (100.00%), Postives = 50/50 (100.00%), Query Frame = -1 
Query:  907 LRRVCLWGESLAALFGIPASMWGTVACGCFVGGDVGGGVWRASFACYIQE 1056
            LRRVCLWGESLAALFGIPASMWGTVACGCFVGGDVGGGVWRASFACYIQE
Sbjct:  272 LRRVCLWGESLAALFGIPASMWGTVACGCFVGGDVGGGVWRASFACYIQE 321
[Close]
BLAST of jgi.p|Trimin1|174772 vs. uniprot
Match: A0A0K2TEJ3_LEPSM (Protein kinase domain-containing protein n=3 Tax=Lepeophtheirus salmonis TaxID=72036 RepID=A0A0K2TEJ3_LEPSM)

HSP 1 Score: 110 bits (276), Expect = 4.510e-23
Identity = 79/262 (30.15%), Postives = 123/262 (46.95%), Query Frame = 1 
Query:  127 ESLHRELMALQALKDHSNIISLFSIIDDQKSDITWLVEEMAERGSLVGVMMSGMECQRMGY----EIVCGLAHMHSKGFIHRDVKPANILRAANGTSKLADFGCCVRMEEGGDTARNKHFMGTPAFMAPETFK-----DGVVTPAVDVWSFASTLHYVVYGTLPFDTRVRGGTKGKNAAVDDAAIEDSIMFYEPYLGTNARPRHMKNMEKRWHSDDVTKFNHFCKMGLHKNPTHRCTLGQWRQHEWLYFYYI-PLVAVEMPC 882
            + ++RE+  ++ L DH N+  L  ++DD + +  ++V E+ ERG ++ V       +   +    +I  GL ++H +  IHRD+KP+N+LRA NG+ K+AD G C   +  G  A   +  GTPAF  PE+       +     A D+WS   TL+ +VYG +PF          K         EDS +     L         K++ KR                L K+P  R TL + +QH+W+  Y I PL+  E  C
Sbjct:  323 QKVYREIATMKKL-DHPNVTKLVEVLDDPEDENMYMVFELLERGEILEVPTDSPLTEEQAWLAFRDITLGLEYLHYQKIIHRDIKPSNLLRADNGSIKIADLGVCNEFD--GHDAFLTNTAGTPAFTPPESLSHKPGDEPFSGKAADIWSMGVTLYSIVYGKVPFHDENILALYNKIRTQPLVFDEDSDISISEEL---------KDIIKRM---------------LVKDPNERITLQELKQHDWVTGYGIYPLLTEEENC 557
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|174772 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZCT2_9STRA2.470e-268100.00Kinase-like domain-containing protein n=1 Tax=Trib... [more]
A0A836CFM8_9STRA1.080e-14771.63Kinase-like domain-containing protein n=2 Tax=Trib... [more]
A0A835Z3R1_9STRA2.790e-8846.95Kinase-like domain-containing protein n=1 Tax=Trib... [more]
A0A836CE44_9STRA2.460e-3335.97Kinase-like domain-containing protein n=1 Tax=Trib... [more]
A0A835YXT3_9STRA3.420e-3037.50Kinase-like domain-containing protein n=2 Tax=Trib... [more]
A0A1Y1YIT7_9FUNG3.090e-2631.03Kinase-like protein n=1 Tax=Basidiobolus meristosp... [more]
A0A497E989_9BACT3.900e-2534.80Non-specific serine/threonine protein kinase n=1 T... [more]
A0A523VB14_9CHLR8.980e-2532.52Non-specific serine/threonine protein kinase n=1 T... [more]
A0A835ZIS8_9STRA3.090e-24100.00Uncharacterized protein n=2 Tax=Tribonema minus Ta... [more]
A0A0K2TEJ3_LEPSM4.510e-2330.15Protein kinase domain-containing protein n=3 Tax=L... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_117contigContig_117:433526..434581 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|174772|e_gw1.117.31.1
BRITEko00000,ko00001,ko01000,ko01001,ko01009,ko03009
KEGG Pathwayko04140,ko04152,ko04211,ko04910,ko04920,ko04921,ko05034,map04140,map04152,map04211,map04910,map04920,map04921,map05034
KEGG koko:K01090,ko:K04739,ko:K07359,ko:K14803,ko:K17500
EC2.7.11.17,3.1.3.16
GOsGO:0000166,GO:0000287,GO:0001101,GO:0001726,GO:0001882,GO:0001883,GO:0002682,GO:0002697,GO:0002831,GO:0003674,GO:0003824,GO:0004721,GO:0004722,GO:0005488,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006355,GO:0006357,GO:0006464,GO:0006470,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006970,GO:0008150,GO:0008152,GO:0009414,GO:0009415,GO:0009628,GO:0009651,GO:0009653,GO:0009719,GO:0009725,GO:0009737,GO:0009889,GO:0009987,GO:0010033,GO:0010035,GO:0010468,GO:0010556,GO:0016020,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0017076,GO:0019001,GO:0019219,GO:0019222,GO:0019538,GO:0030145,GO:0030154,GO:0031252,GO:0031323,GO:0031326,GO:0031347,GO:0032101,GO:0032502,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0033554,GO:0033993,GO:0035639,GO:0036094,GO:0036211,GO:0042221,GO:0042578,GO:0042995,GO:0043167,GO:0043168,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043618,GO:0043620,GO:0043900,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0046872,GO:0046914,GO:0048583,GO:0048856,GO:0048869,GO:0050688,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051252,GO:0051716,GO:0060255,GO:0061392,GO:0061416,GO:0065007,GO:0071214,GO:0071470,GO:0071472,GO:0071704,GO:0080090,GO:0080134,GO:0097159,GO:0097305,GO:0097367,GO:0104004,GO:0120025,GO:0140096,GO:1901265,GO:1901363,GO:1901564,GO:1901700,GO:1903506,GO:2000112,GO:2001141
Preferred namespnA
DescriptioncAMP-dependent protein kinase regulator activity
COG categoryT
Max annot lvl2759|Eukaryota
EggNOG OGsCOG0631@1|root,COG0664@1|root,KOG0585@1|root,KOG0585@2759|Eukaryota,KOG0698@2759|Eukaryota,KOG1113@2759|Eukaryota
Evalue1.06e-29
Seed ortholog112098.XP_008610615.1
Hectar predicted targeting categoryother localisation
TranscriptId175094
TrackFilteredModels1
ProteinId174772
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|174772gene_5139Tribonema minus UTEX_B_3156 geneContig_117 433526..434581 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_5139_1exon_5139_1Tribonema minus UTEX_B_3156 exonContig_117 433526..434581 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_5139CDS_5139Tribonema minus UTEX_B_3156 CDSContig_117 433526..434581 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|174772Trimin1|174772|e_gw1.117.31.1Tribonema minus UTEX_B_3156 polypeptideContig_117 433526..434581 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_5139 ID=mRNA_5139|Name=jgi.p|Trimin1|174772|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1056bp|location=Sequence derived from alignment at Contig_117:433526..434581+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCGTTAACGATTACGTCGTCTCCGGCAGGCTGGGGGCTGGGGTGAC
CGCTCAAGTGTACGAGTGCCACAGCCCTCAGTACGGCAAGGCCGCTCTGA
AGGTCATAGAAAAGAGCACAGGTCGTGAGTCTCTCCACCGCGAGCTCATG
GCTCTGCAGGCTCTCAAGGACCACAGCAACATCATATCGCTGTTCAGCAT
AATCGACGATCAGAAATCTGATATCACTTGGCTCGTAGAGGAGATGGCGG
AGAGGGGCTCTCTGGTGGGGGTGATGATGTCCGGCATGGAGTGTCAGCGG
ATGGGGTACGAAATCGTTTGCGGATTGGCGCACATGCACTCGAAGGGATT
CATACACCGCGACGTCAAGCCGGCCAACATACTGAGGGCTGCGAACGGGA
CTTCCAAGCTGGCTGACTTCGGGTGTTGCGTCCGCATGGAAGAGGGCGGC
GACACGGCTCGCAACAAGCACTTCATGGGGACTCCGGCGTTCATGGCGCC
TGAGACATTCAAAGACGGAGTGGTCACCCCTGCAGTAGATGTGTGGTCGT
TCGCTTCGACTCTGCACTATGTGGTATACGGAACATTGCCCTTCGACACG
CGGGTGAGGGGGGGTACGAAGGGAAAGAACGCTGCGGTAGATGATGCAGC
CATTGAAGATTCCATCATGTTTTATGAGCCGTATCTGGGCACCAACGCCC
GTCCCCGGCATATGAAGAATATGGAAAAGAGATGGCACAGCGATGATGTG
ACAAAATTTAATCATTTCTGCAAGATGGGATTGCACAAGAACCCCACACA
CCGATGCACGTTGGGACAATGGCGACAGCACGAGTGGTTGTACTTTTATT
ATATTCCACTTGTGGCTGTGGAAATGCCATGTTGTAGGTGTGTCGCCTTG
TTCTCACTCTTGGATGTAGCATGCAAAGCTTGCACGCCACACCCCGCCCC
CCACATCACCCCCAACAAAGCACCCGCAAGCGACTGTCCCCCACATACTA
GCAGGGATACCAAACAAAGCTGCAAGACTCTCCCCCCACAGACAGACCCG
TCTTAG
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protein sequence of jgi.p|Trimin1|174772

>Trimin1|174772|e_gw1.117.31.1 ID=Trimin1|174772|e_gw1.117.31.1|Name=jgi.p|Trimin1|174772|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=352bp
MSVNDYVVSGRLGAGVTAQVYECHSPQYGKAALKVIEKSTGRESLHRELM
ALQALKDHSNIISLFSIIDDQKSDITWLVEEMAERGSLVGVMMSGMECQR
MGYEIVCGLAHMHSKGFIHRDVKPANILRAANGTSKLADFGCCVRMEEGG
DTARNKHFMGTPAFMAPETFKDGVVTPAVDVWSFASTLHYVVYGTLPFDT
RVRGGTKGKNAAVDDAAIEDSIMFYEPYLGTNARPRHMKNMEKRWHSDDV
TKFNHFCKMGLHKNPTHRCTLGQWRQHEWLYFYYIPLVAVEMPCCRCVAL
FSLLDVACKACTPHPAPHITPNKAPASDCPPHTSRDTKQSCKTLPPQTDP
S*
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mRNA from alignment at Contig_117:433526..434581+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5139 ID=mRNA_5139|Name=jgi.p|Trimin1|174772|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1056bp|location=Sequence derived from alignment at Contig_117:433526..434581+ (Tribonema minus UTEX_B_3156 )
ATGAGCGTTAACGATTACGTCGTCTCCGGCAGGCTGGGGGCTGGGGTGAC
CGCTCAAGTGTACGAGTGCCACAGCCCTCAGTACGGCAAGGCCGCTCTGA
AGGTCATAGAAAAGAGCACAGGTCGTGAGTCTCTCCACCGCGAGCTCATG
GCTCTGCAGGCTCTCAAGGACCACAGCAACATCATATCGCTGTTCAGCAT
AATCGACGATCAGAAATCTGATATCACTTGGCTCGTAGAGGAGATGGCGG
AGAGGGGCTCTCTGGTGGGGGTGATGATGTCCGGCATGGAGTGTCAGCGG
ATGGGGTACGAAATCGTTTGCGGATTGGCGCACATGCACTCGAAGGGATT
CATACACCGCGACGTCAAGCCGGCCAACATACTGAGGGCTGCGAACGGGA
CTTCCAAGCTGGCTGACTTCGGGTGTTGCGTCCGCATGGAAGAGGGCGGC
GACACGGCTCGCAACAAGCACTTCATGGGGACTCCGGCGTTCATGGCGCC
TGAGACATTCAAAGACGGAGTGGTCACCCCTGCAGTAGATGTGTGGTCGT
TCGCTTCGACTCTGCACTATGTGGTATACGGAACATTGCCCTTCGACACG
CGGGTGAGGGGGGGTACGAAGGGAAAGAACGCTGCGGTAGATGATGCAGC
CATTGAAGATTCCATCATGTTTTATGAGCCGTATCTGGGCACCAACGCCC
GTCCCCGGCATATGAAGAATATGGAAAAGAGATGGCACAGCGATGATGTG
ACAAAATTTAATCATTTCTGCAAGATGGGATTGCACAAGAACCCCACACA
CCGATGCACGTTGGGACAATGGCGACAGCACGAGTGGTTGTACTTTTATT
ATATTCCACTTGTGGCTGTGGAAATGCCATGTTGTAGGTGTGTCGCCTTG
TTCTCACTCTTGGATGTAGCATGCAAAGCTTGCACGCCACACCCCGCCCC
CCACATCACCCCCAACAAAGCACCCGCAAGCGACTGTCCCCCACATACTA
GCAGGGATACCAAACAAAGCTGCAAGACTCTCCCCCCACAGACAGACCCG
TCTTAG
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Coding sequence (CDS) from alignment at Contig_117:433526..434581+

>mRNA_5139 ID=mRNA_5139|Name=jgi.p|Trimin1|174772|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1056bp|location=Sequence derived from alignment at Contig_117:433526..434581+ (Tribonema minus UTEX_B_3156 )
ATGAGCGTTAACGATTACGTCGTCTCCGGCAGGCTGGGGGCTGGGGTGAC
CGCTCAAGTGTACGAGTGCCACAGCCCTCAGTACGGCAAGGCCGCTCTGA
AGGTCATAGAAAAGAGCACAGGTCGTGAGTCTCTCCACCGCGAGCTCATG
GCTCTGCAGGCTCTCAAGGACCACAGCAACATCATATCGCTGTTCAGCAT
AATCGACGATCAGAAATCTGATATCACTTGGCTCGTAGAGGAGATGGCGG
AGAGGGGCTCTCTGGTGGGGGTGATGATGTCCGGCATGGAGTGTCAGCGG
ATGGGGTACGAAATCGTTTGCGGATTGGCGCACATGCACTCGAAGGGATT
CATACACCGCGACGTCAAGCCGGCCAACATACTGAGGGCTGCGAACGGGA
CTTCCAAGCTGGCTGACTTCGGGTGTTGCGTCCGCATGGAAGAGGGCGGC
GACACGGCTCGCAACAAGCACTTCATGGGGACTCCGGCGTTCATGGCGCC
TGAGACATTCAAAGACGGAGTGGTCACCCCTGCAGTAGATGTGTGGTCGT
TCGCTTCGACTCTGCACTATGTGGTATACGGAACATTGCCCTTCGACACG
CGGGTGAGGGGGGGTACGAAGGGAAAGAACGCTGCGGTAGATGATGCAGC
CATTGAAGATTCCATCATGTTTTATGAGCCGTATCTGGGCACCAACGCCC
GTCCCCGGCATATGAAGAATATGGAAAAGAGATGGCACAGCGATGATGTG
ACAAAATTTAATCATTTCTGCAAGATGGGATTGCACAAGAACCCCACACA
CCGATGCACGTTGGGACAATGGCGACAGCACGAGTGGTTGTACTTTTATT
ATATTCCACTTGTGGCTGTGGAAATGCCATGTTGTAGGTGTGTCGCCTTG
TTCTCACTCTTGGATGTAGCATGCAAAGCTTGCACGCCACACCCCGCCCC
CCACATCACCCCCAACAAAGCACCCGCAAGCGACTGTCCCCCACATACTA
GCAGGGATACCAAACAAAGCTGCAAGACTCTCCCCCCACAGACAGACCCG
TCTTAG
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