mRNA_5109 (mRNA) Tribonema minus UTEX_B_3156
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Overview
Homology
BLAST of jgi.p|Trimin1|154228 vs. uniprot
Match: A0A836CMZ8_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMZ8_9STRA) HSP 1 Score: 432 bits (1111), Expect = 5.500e-153 Identity = 223/223 (100.00%), Postives = 223/223 (100.00%), Query Frame = 1
Query: 1 SGVATVDESIANLPLLPEYVKKLAMSRNERDVLAKKATKALEKKSVNSMQINAASLIDECVSISGNPKSNPFDLACAIGLVSGRRMIEIFKTAEFELLDRDDRTLLFAGQAKKSFPCDADAYRIPTLAKSSAIVAGLRRLRDRKCADDMDNKQVNLKWSNSANTAARRLLGDGHHFHDLRAIYAVISFNATLPHSFSLNAFVAKVLGHAGLNNSLNYTSIHVN 669
SGVATVDESIANLPLLPEYVKKLAMSRNERDVLAKKATKALEKKSVNSMQINAASLIDECVSISGNPKSNPFDLACAIGLVSGRRMIEIFKTAEFELLDRDDRTLLFAGQAKKSFPCDADAYRIPTLAKSSAIVAGLRRLRDRKCADDMDNKQVNLKWSNSANTAARRLLGDGHHFHDLRAIYAVISFNATLPHSFSLNAFVAKVLGHAGLNNSLNYTSIHVN
Sbjct: 1 SGVATVDESIANLPLLPEYVKKLAMSRNERDVLAKKATKALEKKSVNSMQINAASLIDECVSISGNPKSNPFDLACAIGLVSGRRMIEIFKTAEFELLDRDDRTLLFAGQAKKSFPCDADAYRIPTLAKSSAIVAGLRRLRDRKCADDMDNKQVNLKWSNSANTAARRLLGDGHHFHDLRAIYAVISFNATLPHSFSLNAFVAKVLGHAGLNNSLNYTSIHVN 223
BLAST of jgi.p|Trimin1|154228 vs. uniprot
Match: A0A835Z6Q2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6Q2_9STRA) HSP 1 Score: 315 bits (806), Expect = 4.630e-96 Identity = 153/206 (74.27%), Postives = 186/206 (90.29%), Query Frame = 1
Query: 1 SGVATVDESIANLPLLPEYVKKLAMSRNERDVLAKKATKALEKKSVNSMQINAASLIDECVSISGNPKSNPFDLACAIGLVSGRRMIEIFKTAEFELLDRDDRTLLFAGQAKKSFPCDADAYRIPTLAKSSAIVAGLRRLRDRKCADDMDNKQVNLKWSNSANTAARRLLGDGHHFHDLRAIYAVISFNATLPHSFSLNAFVAKVL 618
SGV++VDE IA LPLLP++++KLA+SRNERD LAKKAT+ALEKKSVNSMQI+A++LID+CVSI +P++N FD+ACAIGLVSGRRM+E+FKTAEF++ +D+RTL F+GQAKKSFPCDA +RIPTL SS ++A L +LRDRK ADD+ NK+VNLKWSNSANTAARRLLGDGHHFHDLR IYAVI+FNATLPH++SLNAFVAK +
Sbjct: 630 SGVSSVDELIAALPLLPDHIRKLALSRNERDTLAKKATEALEKKSVNSMQIDASALIDKCVSILSDPRANSFDVACAIGLVSGRRMVEVFKTAEFDIAGKDNRTLTFSGQAKKSFPCDAQVFRIPTLIDSSTVIAALNKLRDRKPADDLSNKEVNLKWSNSANTAARRLLGDGHHFHDLRGIYAVIAFNATLPHTYSLNAFVAKCI 835
BLAST of jgi.p|Trimin1|154228 vs. uniprot
Match: A0A835Z8I5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8I5_9STRA) HSP 1 Score: 233 bits (593), Expect = 8.860e-73 Identity = 120/222 (54.05%), Postives = 157/222 (70.72%), Query Frame = 1
Query: 1 SGVATVDESIANLPLLPEYVKKLAMSRNERDVLAKKATKALEKKSVNSMQINAASLIDECVSISGNPKSNPFDLACAIGLVSGRRMIEIFKTAEFELLDRDDRTLLFAGQAKKSFPCDADAYRIPTLAKSSAIVAGLRRLRDRKCADDMDNKQVNLKWSNSANTAARRLLGDGHHFHDLRAIYAVISFNATLPHSFSLNAFVAKVLGHAGLNNSLNYTSIHV 666
+G+ VD +I LP+LP+YV+ L +++ E D A+K+ +AL KSVNS+ I+A+ LI EC N +SN FDLA AI L GRRM+EIF F+++ D RTL FAGQ KK F D IPTL ++SA++A + RLR K D + N+ +NLK+SNS +AARRLLG HFH+LRA+YAVI+FNATLPHS+SLNAFV++VLGH GL NSL Y I+V
Sbjct: 67 TGLEDVDAAIQKLPILPQYVRDLHLTKQESDDAARKSMEALATKSVNSINIDASDLIAECEKTLHNAESNAFDLAAAIALTCGRRMVEIFSVGSFDVVAGDQRTLAFAGQVKKRFGSDDCTMHIPTLTEASAVLAAINRLRSEKKCDGLSNRDINLKYSNSCQSAARRLLGKNGHFHELRAMYAVIAFNATLPHSYSLNAFVSRVLGHVGLGNSLTYACINV 288
BLAST of jgi.p|Trimin1|154228 vs. uniprot
Match: A0A835Z5G7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5G7_9STRA) HSP 1 Score: 226 bits (577), Expect = 7.050e-68 Identity = 117/222 (52.70%), Postives = 156/222 (70.27%), Query Frame = 1
Query: 1 SGVATVDESIANLPLLPEYVKKLAMSRNERDVLAKKATKALEKKSVNSMQINAASLIDECVSISGNPKSNPFDLACAIGLVSGRRMIEIFKTAEFELLDRDDRTLLFAGQAKKSFPCDADAYRIPTLAKSSAIVAGLRRLRDRKCADDMDNKQVNLKWSNSANTAARRLLGDGHHFHDLRAIYAVISFNATLPHSFSLNAFVAKVLGHAGLNNSLNYTSIHV 666
+G+ VD+ I LP+LP+YV+ L +++ E D +A+K+ +AL KSVNS+ ++A+ LI +C + KSN FDLA AI L GRRM EIF +FE ++ ++RTL F+GQ KK F +PTLAK+S + + RLR K + N+ VNLKWSNS +AARRLLGD HFH+LRA+YAVI+FNATLPHS+SLNAFV++VLGH GL NSL Y I+V
Sbjct: 288 TGLEDVDDGILKLPILPQYVRDLHLTKQESDEVARKSMEALAIKSVNSVCVDASDLISKCEKTLKDVKSNAFDLAAAIALTCGRRMTEIFSVGKFEAVEGEERTLAFSGQVKKRFGSHDATNFVPTLAKASVFLDAINRLRVEKSCTGLSNRDVNLKWSNSCQSAARRLLGDDGHFHELRAMYAVIAFNATLPHSYSLNAFVSRVLGHVGLGNSLTYACINV 509
BLAST of jgi.p|Trimin1|154228 vs. uniprot
Match: A0A835YL11_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YL11_9STRA) HSP 1 Score: 228 bits (582), Expect = 1.240e-67 Identity = 117/222 (52.70%), Postives = 157/222 (70.72%), Query Frame = 1
Query: 1 SGVATVDESIANLPLLPEYVKKLAMSRNERDVLAKKATKALEKKSVNSMQINAASLIDECVSISGNPKSNPFDLACAIGLVSGRRMIEIFKTAEFELLDRDDRTLLFAGQAKKSFPCDADAYRIPTLAKSSAIVAGLRRLRDRKCADDMDNKQVNLKWSNSANTAARRLLGDGHHFHDLRAIYAVISFNATLPHSFSLNAFVAKVLGHAGLNNSLNYTSIHV 666
+G+ VD +I LP+LP+YV+ L +++ E D A+K+ +AL KSVNS+ I+A+ LI +C + +SN FDLA AI L GRRM+EIF F+++ D RTL FAGQ KK F D IPTL ++SA++A +LR K D + N+++NLK+SNS +AARRLLG HFH+LRA+YAVI+FNATLPHS+SLNAFV++VLGH GL NSL Y I+V
Sbjct: 398 TGLEDVDAAIQKLPILPQYVRDLHLTKQECDDAARKSMEALATKSVNSINIDASDLIAKCEKTLNDTESNAFDLAAAIALTCGRRMVEIFSVGSFDVVADDQRTLAFAGQVKKRFGSDDSTVHIPTLTEASAVLAATNKLRSEKKCDGLSNREINLKYSNSCQSAARRLLGKDGHFHELRAMYAVIAFNATLPHSYSLNAFVSRVLGHVGLGNSLTYACINV 619
BLAST of jgi.p|Trimin1|154228 vs. uniprot
Match: A0A835Z4K7_9STRA (Uncharacterized protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4K7_9STRA) HSP 1 Score: 181 bits (459), Expect = 4.710e-52 Identity = 100/223 (44.84%), Postives = 140/223 (62.78%), Query Frame = 1
Query: 1 SGVATVDESIANLPLLPEYVKKLAMSRNERDVLAKKATKALEKKSVNSMQINAASLIDECVSISGNPKSNPFDLACAIGLVSGRRMIEIFKTAEFELLDRDDRTLLFAGQAKKSFPCDADAYRIPTLAKSSAIVAGLRRLRDRKCADDMDNKQVNLKWSNSANTAARRLLGDGHHFHDLRAIYAVISFNATLPHSFSLNAFVAKVLGHAGLNNSLNYTSIHVN 669
+G A +D I ++ L P+Y+K+L ++ ER L K+ AL+KKS ++ +++A L+D+ + + S PFD+ACA+ L++GRRMIE+FKT F D + +F+GQAK D YRIP L ++ L RLR K DM N VN K+S N AAR+ LG G FHD R Y V+ +N LPH +SLN FV++VLGH+GL NSL+YT+IHVN
Sbjct: 112 TGEARIDAIICDIRLFPDYMKELRLTDGERIALKKRGEDALDKKSSSAWELDAGVLVDKARGVIEDDISAPFDIACALALLTGRRMIELFKTGSFSA-GADATSAVFSGQAKTGSAED-HPYRIPLLCPFRSVEVALSRLRRMKPCGDMSNAAVNSKYSGRCNVAARQWLGPGRKFHDFREGYGVVCYNLCLPHKWSLNLFVSRVLGHSGLENSLHYTAIHVN 332
BLAST of jgi.p|Trimin1|154228 vs. uniprot
Match: A0A835ZQ11_9STRA (Uncharacterized protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZQ11_9STRA) HSP 1 Score: 182 bits (461), Expect = 1.250e-51 Identity = 108/233 (46.35%), Postives = 138/233 (59.23%), Query Frame = 1
Query: 1 SGVATVDESIANLPLLPEYVKKLAMSRNERDVLAKKATKALEKKSVNSMQINAASLIDECVSISGNPKSNPFDLACAIGLVSGRRMIEIFKTAEFELLDRD--DRTLLFAGQAKK----SFPCDADA------YRIPTLAKSSAIVAGLRRLRDRKCADDMDNKQVNLKWSNSANTAARRLLGDGHHFHDLRAIYAVISFNATLPHSFSLNAFVAKVLGHAGLNNSLNYTSIH 663
+G A +D ++A+LPLLPE++ L + +RD +A++AL KS S I A LI+ +P + PFDLACAI L SGRRM+E+F+T +F R F GQ K+ P A A Y IP L + AG+ RLR K A D+ N +VNLKWS S N AARR LGDG FHDLR YAV ++ LPH +SLN +V+KVLGHA L NSL+YT IH
Sbjct: 108 TGDAGLDGTLASLPLLPEFIDGLRLPSKDRDDARLRASRALADKSAKSWVIRAGDLIERARGALADPSAGPFDLACAIALCSGRRMVEVFRTGDFAPAPRSLGPHACSFGGQVKRRGTGGEPGTAAAAPGGERYDIPLLCPLKDLRAGVARLRASKPAADLTNAEVNLKWSGSCNAAARRWLGDGRKFHDLREAYAVCGYHLALPHCWSLNLWVSKVLGHAALANSLHYTCIH 340
BLAST of jgi.p|Trimin1|154228 vs. uniprot
Match: A0A835Z043_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z043_9STRA) HSP 1 Score: 176 bits (447), Expect = 3.260e-50 Identity = 98/222 (44.14%), Postives = 131/222 (59.01%), Query Frame = 1
Query: 1 SGVATVDESIANLPLLPEYVKKLAMSRNERDVLAKKATKALEKKSVNSMQINAASLIDECVSISGNPKSNPFDLACAIGLVSGRRMIEIFKTAEFELLDRDDRTLLFAGQAKKSFPCDADAYRIPTLAKSSAIVAGLRRLRDRKCADDMDNKQVNLKWSNSANTAARRLLGDGHHFHDLRAIYAVISFNATLPHSFSLNAFVAKVLGHAGLNNSLNYTSIHV 666
+G+ VD +IA+LPLLP+YV +L ++R E D +A+ RRM+EIF FE ++ + RTL F+GQ KK F D IPTLA +S ++ + RLR K +D + N+ +NLKWSNS +AARRLLGDG HFH+LRA+YAVI++N TLPHS+SLNAFV++VLGHAGL N L+YT I+V
Sbjct: 168 TGLEDVDTAIASLPLLPDYVLELHLTRKESDEVAR------------------------------------------------RRMVEIFSAGSFETVEGEGRTLAFSGQVKKRFGSDDTTNFIPTLAPASLMLDAINRLRAEKQSDGLSNRDINLKWSNSCQSAARRLLGDGGHFHELRAMYAVIAYNVTLPHSYSLNAFVSRVLGHAGLGNCLHYTCINV 341
BLAST of jgi.p|Trimin1|154228 vs. uniprot
Match: A0A835YYB8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYB8_9STRA) HSP 1 Score: 173 bits (438), Expect = 8.780e-49 Identity = 95/224 (42.41%), Postives = 137/224 (61.16%), Query Frame = 1
Query: 1 SGVATVDESIANLPLLPEYVKKLAMSRNERDVLAKKATKALEKKSVNSMQINAASLIDECVSISGNPKSNPFDLACAIGLVSGRRMIEIFKTAEFELLDRD--DRTLLFAGQAKKSFPCDADAYRIPTLAKSSAIVAGLRRLRDRKCADDMDNKQVNLKWSNSANTAARRLLGDGHHFHDLRAIYAVISFNATLPHSFSLNAFVAKVLGHAGLNNSLNYTSIHV 666
SG +D IA + + P+++++L +S ER + +A ALEKKS + +NA L+D + + S PF+LA A+ L++GRRM+EIFK F+ D F GQAK + Y +P LA S + GL RLR K A ++ K+VN KW TAA+++LG+ H FHD+R YA+I++N LPH++SLN +V+KVLGH G+ NSL+YT IHV
Sbjct: 111 SGDPRIDALIAGVRIFPDFMRELRVSNEERADMKDRARLALEKKSCTTWDVNAGELLDWARRVVADDISPPFELAAALALLTGRRMVEIFKLGSFDAAPAGYGDYACAFMGQAKTNELEAPQHYLLPLLAPLSDVQTGLSRLRRMKPAAELSRKEVNSKWDGCCCTAAKKVLGEDHKFHDMREAYAIITYNLALPHTWSLNYWVSKVLGHKGMENSLHYTCIHV 334 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|154228 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 9
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_5109 ID=mRNA_5109|Name=jgi.p|Trimin1|154228|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=669bp|location=Sequence derived from alignment at Contig_117:349817..350485+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. TCGGGGGTGGCGACTGTCGACGAGTCTATCGCCAACCTTCCTCTTCTGCCback to top protein sequence of jgi.p|Trimin1|154228 >Trimin1|154228|gw1.117.122.1 ID=Trimin1|154228|gw1.117.122.1|Name=jgi.p|Trimin1|154228|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=223bp SGVATVDESIANLPLLPEYVKKLAMSRNERDVLAKKATKALEKKSVNSMQback to top mRNA from alignment at Contig_117:349817..350485+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_5109 ID=mRNA_5109|Name=jgi.p|Trimin1|154228|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=669bp|location=Sequence derived from alignment at Contig_117:349817..350485+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_117:349817..350485+ >mRNA_5109 ID=mRNA_5109|Name=jgi.p|Trimin1|154228|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=669bp|location=Sequence derived from alignment at Contig_117:349817..350485+ (Tribonema minus UTEX_B_3156 )back to top |