mRNA_5104 (mRNA) Tribonema minus UTEX_B_3156
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Overview
Homology
BLAST of jgi.p|Trimin1|174729 vs. uniprot
Match: A0A835ZIJ3_9STRA (CheY-like superfamily protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZIJ3_9STRA) HSP 1 Score: 352 bits (903), Expect = 1.290e-122 Identity = 182/182 (100.00%), Postives = 182/182 (100.00%), Query Frame = 1
Query: 1 MEAVKGDITFSSSSAGSTFTFTFPVSGITAYVGTPPSTPIDSLSDASSAAVPSPASAGRQRVLVVDDNSVIRKVYSFMLRDDYTCDVACDGLEALEMCSTNTYGLILMDVVMPKMNGTDCAAQIRRHDLVTPIVFFTGETGMHIQRIVDAGVNMYLLRKPVKKEEMMQLFSAILVGGENLSR 546
MEAVKGDITFSSSSAGSTFTFTFPVSGITAYVGTPPSTPIDSLSDASSAAVPSPASAGRQRVLVVDDNSVIRKVYSFMLRDDYTCDVACDGLEALEMCSTNTYGLILMDVVMPKMNGTDCAAQIRRHDLVTPIVFFTGETGMHIQRIVDAGVNMYLLRKPVKKEEMMQLFSAILVGGENLSR
Sbjct: 1 MEAVKGDITFSSSSAGSTFTFTFPVSGITAYVGTPPSTPIDSLSDASSAAVPSPASAGRQRVLVVDDNSVIRKVYSFMLRDDYTCDVACDGLEALEMCSTNTYGLILMDVVMPKMNGTDCAAQIRRHDLVTPIVFFTGETGMHIQRIVDAGVNMYLLRKPVKKEEMMQLFSAILVGGENLSR 182
BLAST of jgi.p|Trimin1|174729 vs. uniprot
Match: A0A835ZHA7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZHA7_9STRA) HSP 1 Score: 132 bits (331), Expect = 1.850e-32 Identity = 77/182 (42.31%), Postives = 112/182 (61.54%), Query Frame = 1
Query: 10 VKGDITFSSSSAGSTFTFTFPVSGITAYVGTPPSTPIDSLSDASSAAVPSPASAGRQRVLVVDDNSVIRKVYSFMLRDDYTCDVACDGLEAL-----EMCSTNT-YGLILMDVVMPKMNGTDCAAQIRRHDLVTPIVFFTGETGMHIQRIVDAGVNMYLLRKPVKKEEMMQLFSAILVGGEN 537
V G I FS+SS G+TF FTFP+ +A T SL + + S A +RVL+VDDN +IRK++ MLR++Y CD ACDG EAL + +T Y ++L+D +MP M+GT+CA IR D TPI+F +GE G ++ +VD G+NMYLL KP ++ ++++ SA++ N
Sbjct: 459 VNGKIDFSTSSRGTTFWFTFPLMN-SADAST-------SLEGSDMRSTSSAHDAQLRRVLIVDDNHIIRKLFVNMLREEYICDTACDGAEALLKYRKAYANADTAYDVLLLDAIMPIMSGTECAVAIRETDESTPIMFCSGEIGNVLKMVVDEGINMYLLLKPARRAKVLETLSAVIRNSRN 632
BLAST of jgi.p|Trimin1|174729 vs. uniprot
Match: A0A5N5ZBA4_9FLAO (Response regulator n=3 Tax=Kordia TaxID=221065 RepID=A0A5N5ZBA4_9FLAO) HSP 1 Score: 83.2 bits (204), Expect = 2.800e-15 Identity = 46/112 (41.07%), Postives = 70/112 (62.50%), Query Frame = 1
Query: 178 QRVLVVDDNSVIRKVYSFMLRDD-YTCDVACDGLEALEMCSTNTYGLILMDVVMPKMNGTDCAAQIRRHDLVTPIVFFTG-ETGMHIQRIVDAGVNMYLLRKPVKKEEMMQL 507
+R+L+VDDN + R V +L++ Y CDVA DGL+A+++ NTY LILMD+ MP+++G + IR +D TPI+ T E RI +AG+N +++ KP E Q+
Sbjct: 613 KRILIVDDNKINRVVTKRILQNKGYQCDVAEDGLDAIDVLKVNTYDLILMDINMPRIDGIETTKHIRENDQKTPIIALTAVEEDQVRDRIFEAGMNDFII-KPYDLAEFHQI 723
BLAST of jgi.p|Trimin1|174729 vs. uniprot
Match: A0A1C7N1D9_9FUNG (Transcription factor SKN7 n=1 Tax=Choanephora cucurbitarum TaxID=101091 RepID=A0A1C7N1D9_9FUNG) HSP 1 Score: 81.3 bits (199), Expect = 1.190e-14 Identity = 52/111 (46.85%), Postives = 64/111 (57.66%), Query Frame = 1
Query: 181 RVLVVDDNSVIRKVYSFMLR-DDYTCDVACDGLEALEMCSTNTYGLILMDVVMPKMNGTDCAAQIRRHDLVTPIVFFTGETGMH-IQRIVDAGVNMYLLRKPVKKEEMMQL 507
RVL+VDD+SV R V ML + DVA DGLEALE ST Y LILMD+VMPKM+G IRR D +TPIV T + I + G+N +L KP K + +
Sbjct: 339 RVLLVDDDSVYRNVCGRMLTMAGCSMDVAKDGLEALERLSTKKYDLILMDIVMPKMDGISTTRNIRRFDSLTPIVSMTSNYNHNDIMEYIGIGMND-ILPKPFSKNTLYDI 448
BLAST of jgi.p|Trimin1|174729 vs. uniprot
Match: A0A1G1E752_9BACT (Response regulatory domain-containing protein n=1 Tax=Nitrospinae bacterium RIFCSPLOWO2_12_FULL_45_22 TaxID=1801687 RepID=A0A1G1E752_9BACT) HSP 1 Score: 76.3 bits (186), Expect = 2.030e-14 Identity = 44/127 (34.65%), Postives = 75/127 (59.06%), Query Frame = 1
Query: 175 RQRVLVVDDNSVIRKVYSFMLR-DDYTCDVACDGLEALEMCSTNTYGLILMDVVMPKMNGTDCAAQIRRHDLVT--PIVFFTGETGM-HIQRIVDAGVNMYLLRKPVKKEEMMQLFSAILVGGENLS 543
R+++LVV+D R + +F L +DY +A DGLEAL S+N Y LI+MDV+MP ++G + +++ +++ PI+ TG I + V AG + YLL KP K ++++ + + G ++S
Sbjct: 5 RKKILVVEDEKFARDILNFTLSSEDYDISLAEDGLEALNKASSNNYDLIIMDVMMPNIDGYEACRRLKANEITKSIPIILLTGRAQKGDILKGVQAGADDYLL-KPYKLQDLLNRVNKYIGPGTSVS 130
BLAST of jgi.p|Trimin1|174729 vs. uniprot
Match: UPI00069A4C53 (response regulator n=1 Tax=Kordia zhangzhouensis TaxID=1620405 RepID=UPI00069A4C53) HSP 1 Score: 80.1 bits (196), Expect = 3.270e-14 Identity = 45/112 (40.18%), Postives = 70/112 (62.50%), Query Frame = 1
Query: 178 QRVLVVDDNSVIRKVYSFMLRDD-YTCDVACDGLEALEMCSTNTYGLILMDVVMPKMNGTDCAAQIRRHDLVTPIVFFTGETGMHIQ-RIVDAGVNMYLLRKPVKKEEMMQL 507
+R+L+VDDN + R V +L+ Y C+VA DG+EAL++ TN++ LILMD+ MP ++G + IR+ D TPI+ T I+ RI +AG+N +++ KP E Q+
Sbjct: 612 KRILIVDDNKINRVVTKRILQGKGYECEVAEDGIEALDILRTNSFDLILMDINMPNLDGVETTKHIRKIDKRTPIIALTAVEEAQIKDRIQEAGMNDFII-KPYDMAEFHQI 722
BLAST of jgi.p|Trimin1|174729 vs. uniprot
Match: A0A367KHA6_RHIST (Kinase-regulated stress-responsive transcription factor skn7 (Fragment) n=1 Tax=Rhizopus stolonifer TaxID=4846 RepID=A0A367KHA6_RHIST) HSP 1 Score: 79.7 bits (195), Expect = 3.480e-14 Identity = 51/111 (45.95%), Postives = 65/111 (58.56%), Query Frame = 1
Query: 181 RVLVVDDNSVIRKVYSFMLRD-DYTCDVACDGLEALEMCSTNTYGLILMDVVMPKMNGTDCAAQIRRHDLVTPIVFFTGETGMH-IQRIVDAGVNMYLLRKPVKKEEMMQL 507
RVL+VDD+SV R V ML + D+A DGLEAL+ S N Y LILMD+VMPKM+G IRR+D VTPIV T + I + G+N +L KP K + +
Sbjct: 261 RVLLVDDDSVYRDVSGRMLTMVGCSIDLAKDGLEALQKMSINKYDLILMDIVMPKMDGIATTRNIRRYDSVTPIVSMTSNYNHNDIMEYIGIGMND-ILPKPFSKNTLYDI 370
BLAST of jgi.p|Trimin1|174729 vs. uniprot
Match: A0A167MW98_PHYB8 (SKN7 signal transduction response regulator n=1 Tax=Phycomyces blakesleeanus (strain ATCC 8743b / DSM 1359 / FGSC 10004 / NBRC 33097 / NRRL 1555) TaxID=763407 RepID=A0A167MW98_PHYB8) HSP 1 Score: 77.0 bits (188), Expect = 4.540e-14 Identity = 41/111 (36.94%), Postives = 70/111 (63.06%), Query Frame = 1
Query: 181 RVLVVDDNSVIRKVYSFMLR-DDYTCDVACDGLEALEMCSTNTYGLILMDVVMPKMNGTDCAAQIRRHDLVTPIVFFTGETGMH-IQRIVDAGVNMYLLRKPVKKEEMMQL 507
R+LVVDD+S+ R + + +L+ T +VA DGLEA+ T++Y ++LMD++MP ++G IR++D TPI+ T H IQ +++G+N L KP+ ++ +M +
Sbjct: 66 RILVVDDDSIFRSISTRILQFAGCTIEVAVDGLEAMSKLRTDSYDMVLMDIMMPNLDGISATRNIRQYDSWTPIISVTANQSKHDIQEYLNSGMND-CLAKPLDQQMVMAM 175
BLAST of jgi.p|Trimin1|174729 vs. uniprot
Match: A0A0B7NS58_9FUNG (Response regulatory domain-containing protein n=1 Tax=Parasitella parasitica TaxID=35722 RepID=A0A0B7NS58_9FUNG) HSP 1 Score: 79.3 bits (194), Expect = 5.740e-14 Identity = 50/111 (45.05%), Postives = 65/111 (58.56%), Query Frame = 1
Query: 181 RVLVVDDNSVIRKVYSFMLRD-DYTCDVACDGLEALEMCSTNTYGLILMDVVMPKMNGTDCAAQIRRHDLVTPIVFFTGE-TGMHIQRIVDAGVNMYLLRKPVKKEEMMQL 507
RVL+VDD+SV R V ML + D+A DG+EAL+M S Y LILMD+VMPKM+G IRR+D +TPIV T T I + G+N +L KP K + +
Sbjct: 355 RVLLVDDDSVYRDVSGRMLNMVGCSIDLAKDGVEALQMMSVEKYDLILMDIVMPKMDGIVTTRNIRRYDSLTPIVSMTSNFTHSDIMEYIGIGMND-ILPKPFSKNTLYDI 464
BLAST of jgi.p|Trimin1|174729 vs. uniprot
Match: A0A101DE91_ARCFL (Response regulator n=3 Tax=Archaeoglobus fulgidus TaxID=2234 RepID=A0A101DE91_ARCFL) HSP 1 Score: 74.3 bits (181), Expect = 5.760e-14 Identity = 39/114 (34.21%), Postives = 69/114 (60.53%), Query Frame = 1
Query: 181 RVLVVDDNSVIRKVYSFMLRDDYTCDVACDGLEALEMCSTNTYGLILMDVVMPKMNGTDCAAQIRRHDLVTPIVFFTGETGMHIQRIVDAGVNMYLLRKPVKKEEMMQLFSAIL 522
+V+VVDD +R++ ML+D Y A +G EA+E+ ++LMDV+MP MNG + ++I++ D IV T +++++AG + Y+L+KP ++E+++L IL
Sbjct: 3 KVMVVDDEIAMREILKIMLKD-YKVIEASNGREAVELYREERPDIVLMDVMMPLMNGIEATSEIKKIDPDAKIVAITAYASSKGEKVIEAGAD-YILKKPFTRKEVVELIKRIL 114 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|174729 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_5104 ID=mRNA_5104|Name=jgi.p|Trimin1|174729|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=549bp|location=Sequence derived from alignment at Contig_117:334647..335195+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGGAAGCTGTGAAGGGCGACATCACATTCTCGTCGAGCTCTGCTGGGTCback to top protein sequence of jgi.p|Trimin1|174729 >Trimin1|174729|e_gw1.117.24.1 ID=Trimin1|174729|e_gw1.117.24.1|Name=jgi.p|Trimin1|174729|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=183bp MEAVKGDITFSSSSAGSTFTFTFPVSGITAYVGTPPSTPIDSLSDASSAAback to top mRNA from alignment at Contig_117:334647..335195+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_5104 ID=mRNA_5104|Name=jgi.p|Trimin1|174729|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=549bp|location=Sequence derived from alignment at Contig_117:334647..335195+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_117:334647..335195+ >mRNA_5104 ID=mRNA_5104|Name=jgi.p|Trimin1|174729|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=549bp|location=Sequence derived from alignment at Contig_117:334647..335195+ (Tribonema minus UTEX_B_3156 )back to top |