mRNA_5080 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|148718
Unique NamemRNA_5080
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|148718 vs. uniprot
Match: A0A835ZFI2_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFI2_9STRA)

HSP 1 Score: 395 bits (1014), Expect = 5.390e-139
Identity = 199/199 (100.00%), Postives = 199/199 (100.00%), Query Frame = 1 
Query:    1 LLAEHCPIYNFDYREADLPMSLEEYVATKNFLRSDVVTGVVKAAANGDTALHYFLFVERDGGTIVDGKVFDAHPFDIEQVTVRVTEDGVVNAVYFYPHSSVESFAVTGNDVEKVLKDGRPLVYISYGKHASYPVTHVARYLLAGDECLKPVKFDMKALQASSAVMKAAGFGSILPLSRRVVRDLETIPVVLLSKVSTRM 597
            LLAEHCPIYNFDYREADLPMSLEEYVATKNFLRSDVVTGVVKAAANGDTALHYFLFVERDGGTIVDGKVFDAHPFDIEQVTVRVTEDGVVNAVYFYPHSSVESFAVTGNDVEKVLKDGRPLVYISYGKHASYPVTHVARYLLAGDECLKPVKFDMKALQASSAVMKAAGFGSILPLSRRVVRDLETIPVVLLSKVSTRM
Sbjct:    1 LLAEHCPIYNFDYREADLPMSLEEYVATKNFLRSDVVTGVVKAAANGDTALHYFLFVERDGGTIVDGKVFDAHPFDIEQVTVRVTEDGVVNAVYFYPHSSVESFAVTGNDVEKVLKDGRPLVYISYGKHASYPVTHVARYLLAGDECLKPVKFDMKALQASSAVMKAAGFGSILPLSRRVVRDLETIPVVLLSKVSTRM 199
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BLAST of jgi.p|Trimin1|148718 vs. uniprot
Match: A0A836CFW4_9STRA (Uncharacterized protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFW4_9STRA)

HSP 1 Score: 322 bits (824), Expect = 3.210e-109
Identity = 152/199 (76.38%), Postives = 179/199 (89.95%), Query Frame = 1 
Query:    1 LLAEHCPIYNFDYREADLPMSLEEYVATKNFLRSDVVTGVVKAAANGDTALHYFLFVERDGGTIVDGKVFDAHPFDIEQVTVRVTEDGVVNAVYFYPHSSVESFAVTGNDVEKVLKDGRPLVYISYGKHASYPVTHVARYLLAGDECLKPVKFDMKALQASSAVMKAAGFGSILPLSRRVVRDLETIPVVLLSKVSTRM 597
            LL  HCPIYNFDYRE DLPMSLE YVATK F+RSD  TG+VK A NGD+ LHYFLF ERDGGT+V+GK FD HPFDIEQV+VRVT+ GVVNAVYFYPHS+VESFA+TG D++KVL++G P+VYI+YGKHASYPV +V+RYL+AGDECLKPV++D+KA+QAS+AVMK+ GFG+ILPLSRR+VRDLETIPVV L+ VSTRM
Sbjct:    4 LLNAHCPIYNFDYREPDLPMSLEAYVATKQFVRSDTATGIVKQAENGDSVLHYFLFFERDGGTVVEGKAFDTHPFDIEQVSVRVTKHGVVNAVYFYPHSAVESFAITGTDLDKVLQEGHPVVYIAYGKHASYPVPNVSRYLMAGDECLKPVRYDIKAVQASNAVMKSPGFGAILPLSRRIVRDLETIPVVPLALVSTRM 202
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BLAST of jgi.p|Trimin1|148718 vs. uniprot
Match: D7FJZ8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJZ8_ECTSI)

HSP 1 Score: 81.6 bits (200), Expect = 2.960e-15
Identity = 67/208 (32.21%), Postives = 97/208 (46.63%), Query Frame = 1 
Query:    1 LLAEHCPIYNFDYREADLPMSLEEYVATKNFLRSDVVTGVVKAAANGDTA----LHYFLFVERDGGTIVDGKVFDAHPFDIEQVTVRVTEDGVVNAVYFYPHSSVESFAVTG-NDVEKVLKD-GRPLVYISYGKHASYPVT-HVARYLLAG-DECLKPVKFDMKALQASSAVMKAAGF-GSILPLSRRVVRDLETIPVVLLSKVSTRM 597
            LL +H P Y +D +E   P+ L  Y   K+ +  D   GV   + +G+      ++Y+LF   DGG    G + D H +D+E V V +     V+ V++ PHS  E   +   +DV+++L + GRP VY+S GKHASYP+   V R    G D C  P   D           +     G      RR+ RD    P V +  V  RM
Sbjct:   47 LLVKHFPRYFYDEKETLFPIDLNRYTVDKSEV--DGCNGVATPSKDGENTWLIYMNYYLF---DGGVARLGGLGD-HKYDLEIVIVEINRHQNVSGVFYGPHSGHEHMWIRNKDDVKEILDETGRPRVYVSLGKHASYPLPGKVTRLFGFGTDNCENPRPRDRPLFILDHQTRRVDKIDGEFAGPKRRIRRDWSVAPAVRIKDVPRRM 248
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|148718 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A835ZFI2_9STRA5.390e-139100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A836CFW4_9STRA3.210e-10976.38Uncharacterized protein n=2 Tax=Tribonema minus Ta... [more]
D7FJZ8_ECTSI2.960e-1532.21Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_117contigContig_117:251804..252400 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|148718|gw1.117.74.1
Hectar predicted targeting categoryother localisation
TranscriptId149040
TrackFilteredModels1
ProteinId148718
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|148718gene_5080Tribonema minus UTEX_B_3156 geneContig_117 251804..252400 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_5080_1exon_5080_1Tribonema minus UTEX_B_3156 exonContig_117 251804..252400 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_5080CDS_5080Tribonema minus UTEX_B_3156 CDSContig_117 251804..252400 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|148718Trimin1|148718|gw1.117.74.1Tribonema minus UTEX_B_3156 polypeptideContig_117 251804..252400 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_5080 ID=mRNA_5080|Name=jgi.p|Trimin1|148718|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=597bp|location=Sequence derived from alignment at Contig_117:251804..252400- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CTGCTAGCCGAGCACTGCCCGATATACAACTTTGATTACCGCGAGGCTGA
CCTCCCGATGTCGTTAGAGGAGTACGTAGCGACCAAGAACTTCTTGAGGT
CAGACGTAGTGACGGGAGTGGTGAAGGCGGCTGCTAACGGCGACACAGCG
TTGCACTACTTTCTGTTTGTTGAGCGTGACGGCGGCACTATAGTTGACGG
CAAGGTGTTCGATGCGCACCCGTTCGATATTGAGCAGGTCACTGTCAGAG
TGACTGAAGATGGAGTAGTTAATGCCGTGTACTTCTATCCGCATTCATCG
GTAGAGTCCTTCGCTGTCACCGGCAATGACGTAGAGAAGGTCTTGAAGGA
CGGGCGTCCACTCGTTTACATCTCATACGGTAAGCACGCGAGCTATCCGG
TGACGCACGTCGCTAGATACCTCCTGGCCGGAGACGAGTGTCTGAAACCA
GTCAAGTTCGACATGAAGGCGCTGCAGGCGAGCAGTGCTGTCATGAAGGC
GGCAGGGTTCGGCTCGATCCTGCCTCTGTCACGGCGCGTCGTGCGCGATC
TCGAGACGATTCCTGTCGTGCTCTTGTCGAAGGTCAGCACACGGATG
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protein sequence of jgi.p|Trimin1|148718

>Trimin1|148718|gw1.117.74.1 ID=Trimin1|148718|gw1.117.74.1|Name=jgi.p|Trimin1|148718|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=199bp
LLAEHCPIYNFDYREADLPMSLEEYVATKNFLRSDVVTGVVKAAANGDTA
LHYFLFVERDGGTIVDGKVFDAHPFDIEQVTVRVTEDGVVNAVYFYPHSS
VESFAVTGNDVEKVLKDGRPLVYISYGKHASYPVTHVARYLLAGDECLKP
VKFDMKALQASSAVMKAAGFGSILPLSRRVVRDLETIPVVLLSKVSTRM
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mRNA from alignment at Contig_117:251804..252400-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5080 ID=mRNA_5080|Name=jgi.p|Trimin1|148718|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=597bp|location=Sequence derived from alignment at Contig_117:251804..252400- (Tribonema minus UTEX_B_3156 )
CTGCTAGCCGAGCACTGCCCGATATACAACTTTGATTACCGCGAGGCTGA
CCTCCCGATGTCGTTAGAGGAGTACGTAGCGACCAAGAACTTCTTGAGGT
CAGACGTAGTGACGGGAGTGGTGAAGGCGGCTGCTAACGGCGACACAGCG
TTGCACTACTTTCTGTTTGTTGAGCGTGACGGCGGCACTATAGTTGACGG
CAAGGTGTTCGATGCGCACCCGTTCGATATTGAGCAGGTCACTGTCAGAG
TGACTGAAGATGGAGTAGTTAATGCCGTGTACTTCTATCCGCATTCATCG
GTAGAGTCCTTCGCTGTCACCGGCAATGACGTAGAGAAGGTCTTGAAGGA
CGGGCGTCCACTCGTTTACATCTCATACGGTAAGCACGCGAGCTATCCGG
TGACGCACGTCGCTAGATACCTCCTGGCCGGAGACGAGTGTCTGAAACCA
GTCAAGTTCGACATGAAGGCGCTGCAGGCGAGCAGTGCTGTCATGAAGGC
GGCAGGGTTCGGCTCGATCCTGCCTCTGTCACGGCGCGTCGTGCGCGATC
TCGAGACGATTCCTGTCGTGCTCTTGTCGAAGGTCAGCACACGGATG
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Coding sequence (CDS) from alignment at Contig_117:251804..252400-

>mRNA_5080 ID=mRNA_5080|Name=jgi.p|Trimin1|148718|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=597bp|location=Sequence derived from alignment at Contig_117:251804..252400- (Tribonema minus UTEX_B_3156 )
CTGCTAGCCGAGCACTGCCCGATATACAACTTTGATTACCGCGAGGCTGA
CCTCCCGATGTCGTTAGAGGAGTACGTAGCGACCAAGAACTTCTTGAGGT
CAGACGTAGTGACGGGAGTGGTGAAGGCGGCTGCTAACGGCGACACAGCG
TTGCACTACTTTCTGTTTGTTGAGCGTGACGGCGGCACTATAGTTGACGG
CAAGGTGTTCGATGCGCACCCGTTCGATATTGAGCAGGTCACTGTCAGAG
TGACTGAAGATGGAGTAGTTAATGCCGTGTACTTCTATCCGCATTCATCG
GTAGAGTCCTTCGCTGTCACCGGCAATGACGTAGAGAAGGTCTTGAAGGA
CGGGCGTCCACTCGTTTACATCTCATACGGTAAGCACGCGAGCTATCCGG
TGACGCACGTCGCTAGATACCTCCTGGCCGGAGACGAGTGTCTGAAACCA
GTCAAGTTCGACATGAAGGCGCTGCAGGCGAGCAGTGCTGTCATGAAGGC
GGCAGGGTTCGGCTCGATCCTGCCTCTGTCACGGCGCGTCGTGCGCGATC
TCGAGACGATTCCTGTCGTGCTCTTGTCGAAGGTCAGCACACGGATG
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