mRNA_5036 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|174715
Unique NamemRNA_5036
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
[Close]
BLAST of jgi.p|Trimin1|174715 vs. uniprot
Match: A0A835ZM14_9STRA (EsV-1-99 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZM14_9STRA)

HSP 1 Score: 177 bits (450), Expect = 1.960e-56
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 1 
Query:    1 MTVTDSDTNSMTKRVMRPAISDMSVREERKALQEIRSMANPRPSDMLQCNGMSVAEFALRYTNGHHSKRLKKNQMKQEKKKVSPKCPFQSTS 276
            MTVTDSDTNSMTKRVMRPAISDMSVREERKALQEIRSMANPRPSDMLQCNGMSVAEFALRYTNGHHSKRLKKNQMKQEKKKVSPKCPFQSTS
Sbjct:    1 MTVTDSDTNSMTKRVMRPAISDMSVREERKALQEIRSMANPRPSDMLQCNGMSVAEFALRYTNGHHSKRLKKNQMKQEKKKVSPKCPFQSTS 92
[Close]
BLAST of jgi.p|Trimin1|174715 vs. uniprot
Match: A0A835YYK5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYK5_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 5.570e-11
Identity = 32/57 (56.14%), Postives = 42/57 (73.68%), Query Frame = 1 
Query:   37 KRVMRPAISDMSVREERKALQEIRSMANPRPSDMLQCNGMSVAEFALRYTNGHHSKR 207
            K+ M PA++ MSVREERKALQEIRS+ +P+P  +L+   M+ A FA+ Y  GHH KR
Sbjct:   70 KKKMMPAVATMSVREERKALQEIRSLPDPKPHQILKSCNMTAASFAVAYVLGHHLKR 126
[Close]
BLAST of jgi.p|Trimin1|174715 vs. uniprot
Match: A0A836CQQ8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CQQ8_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 8.620e-10
Identity = 32/63 (50.79%), Postives = 45/63 (71.43%), Query Frame = 1 
Query:   37 KRVMRPAISDMSVREERKALQEIRSMANPRPSDMLQCNGMSVAEFALRYTNGHHSKRLKKNQM 225
            K+ M PA+S M+VR+ER+ALQEIR+M +P+P+  L    MSVA FALR+  GHH   L  +++
Sbjct:   54 KKKMVPAVSFMTVRDERRALQEIRAMKDPKPNQQLTSCDMSVALFALRFIVGHHVSALNNSEI 116
[Close]
BLAST of jgi.p|Trimin1|174715 vs. uniprot
Match: Q8QNH9_ESV1K (EsV-1-99 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QNH9_ESV1K)

HSP 1 Score: 53.9 bits (128), Expect = 1.780e-7
Identity = 30/67 (44.78%), Postives = 38/67 (56.72%), Query Frame = 1 
Query:    7 VTDSDTNSMTKRVMRPAISDMSVREERKALQEIRSMANPRPSDMLQCNGMSVAEFALRYTNGHHSKR 207
            VTD+D     KRVM PAI +M+V+EER  L EIR +        +  NG +  +FAL Y  G H KR
Sbjct:    5 VTDADAQQHGKRVMTPAIENMTVKEERACLSEIRKLGAEVDHQHILSNGWTTGKFALMYVTGQHVKR 71
[Close]
BLAST of jgi.p|Trimin1|174715 vs. uniprot
Match: A0A835Z2M0_9STRA (HNH endonuclease-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2M0_9STRA)

HSP 1 Score: 53.9 bits (128), Expect = 1.720e-6
Identity = 28/49 (57.14%), Postives = 38/49 (77.55%), Query Frame = 1 
Query:   37 KRVMRPAISDMSVREERKALQEIRSMANPRPSDMLQCNGMSVAEFALRY 183
            K+ M PA+S M+VR+ER+ALQEIR+M +P+P+  L    MSVA FALR+
Sbjct:   48 KKKMVPAVSFMTVRDERRALQEIRAMKDPKPNQQLTSCDMSVALFALRF 96
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|174715 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A835ZM14_9STRA1.960e-56100.00EsV-1-99 n=1 Tax=Tribonema minus TaxID=303371 RepI... [more]
A0A835YYK5_9STRA5.570e-1156.14Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CQQ8_9STRA8.620e-1050.79Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
Q8QNH9_ESV1K1.780e-744.78EsV-1-99 n=1 Tax=Ectocarpus siliculosus virus 1 (i... [more]
A0A835Z2M0_9STRA1.720e-657.14HNH endonuclease-domain-containing protein n=1 Tax... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_117contigContig_117:147780..148058 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|174715|e_gw1.117.109.1
Hectar predicted targeting categoryother localisation
TranscriptId175037
TrackFilteredModels1
ProteinId174715
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|174715gene_5036Tribonema minus UTEX_B_3156 geneContig_117 147780..148058 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_5036_1exon_5036_1Tribonema minus UTEX_B_3156 exonContig_117 147780..148058 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_5036CDS_5036Tribonema minus UTEX_B_3156 CDSContig_117 147780..148058 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|174715Trimin1|174715|e_gw1.117.109.1Tribonema minus UTEX_B_3156 polypeptideContig_117 147780..148058 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_5036 ID=mRNA_5036|Name=jgi.p|Trimin1|174715|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=279bp|location=Sequence derived from alignment at Contig_117:147780..148058+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGACCGTGACTGACAGTGACACCAACAGCATGACGAAGCGCGTCATGAG
GCCCGCAATATCAGATATGTCAGTCCGCGAAGAAAGAAAAGCTCTTCAGG
AGATCAGAAGCATGGCCAACCCGCGACCCAGTGATATGCTTCAATGTAAT
GGCATGTCCGTGGCGGAGTTCGCTCTTCGTTACACCAATGGGCACCACTC
GAAACGGCTAAAGAAGAATCAGATGAAGCAAGAAAAAAAAAAGGTGTCGC
CAAAATGCCCCTTTCAATCAACATCGTAA
back to top

protein sequence of jgi.p|Trimin1|174715

>Trimin1|174715|e_gw1.117.109.1 ID=Trimin1|174715|e_gw1.117.109.1|Name=jgi.p|Trimin1|174715|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=93bp
MTVTDSDTNSMTKRVMRPAISDMSVREERKALQEIRSMANPRPSDMLQCN
GMSVAEFALRYTNGHHSKRLKKNQMKQEKKKVSPKCPFQSTS*
back to top

mRNA from alignment at Contig_117:147780..148058+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5036 ID=mRNA_5036|Name=jgi.p|Trimin1|174715|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=279bp|location=Sequence derived from alignment at Contig_117:147780..148058+ (Tribonema minus UTEX_B_3156 )
ATGACCGTGACTGACAGTGACACCAACAGCATGACGAAGCGCGTCATGAG
GCCCGCAATATCAGATATGTCAGTCCGCGAAGAAAGAAAAGCTCTTCAGG
AGATCAGAAGCATGGCCAACCCGCGACCCAGTGATATGCTTCAATGTAAT
GGCATGTCCGTGGCGGAGTTCGCTCTTCGTTACACCAATGGGCACCACTC
GAAACGGCTAAAGAAGAATCAGATGAAGCAAGAAAAAAAAAAGGTGTCGC
CAAAATGCCCCTTTCAATCAACATCGTAA
back to top

Coding sequence (CDS) from alignment at Contig_117:147780..148058+

>mRNA_5036 ID=mRNA_5036|Name=jgi.p|Trimin1|174715|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=279bp|location=Sequence derived from alignment at Contig_117:147780..148058+ (Tribonema minus UTEX_B_3156 )
ATGACCGTGACTGACAGTGACACCAACAGCATGACGAAGCGCGTCATGAG
GCCCGCAATATCAGATATGTCAGTCCGCGAAGAAAGAAAAGCTCTTCAGG
AGATCAGAAGCATGGCCAACCCGCGACCCAGTGATATGCTTCAATGTAAT
GGCATGTCCGTGGCGGAGTTCGCTCTTCGTTACACCAATGGGCACCACTC
GAAACGGCTAAAGAAGAATCAGATGAAGCAAGAAAAAAAAAAGGTGTCGC
CAAAATGCCCCTTTCAATCAACATCGTAA
back to top