mRNA_5035 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|151251
Unique NamemRNA_5035
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|151251 vs. uniprot
Match: A0A835ZBD3_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBD3_9STRA)

HSP 1 Score: 243 bits (620), Expect = 9.340e-82
Identity = 112/112 (100.00%), Postives = 112/112 (100.00%), Query Frame = 1 
Query:    1 RRTVLEAALSAHGLTIRPDSGLCRGYIHNTLEPHYTPDVIAFICGLHKYLYECTDYGAWCSDTILRLARMLAPSMGSYESALTYAKKHEVPILKAETLSEYGMPDVWPWLQH 336
            RRTVLEAALSAHGLTIRPDSGLCRGYIHNTLEPHYTPDVIAFICGLHKYLYECTDYGAWCSDTILRLARMLAPSMGSYESALTYAKKHEVPILKAETLSEYGMPDVWPWLQH
Sbjct:    1 RRTVLEAALSAHGLTIRPDSGLCRGYIHNTLEPHYTPDVIAFICGLHKYLYECTDYGAWCSDTILRLARMLAPSMGSYESALTYAKKHEVPILKAETLSEYGMPDVWPWLQH 112
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BLAST of jgi.p|Trimin1|151251 vs. uniprot
Match: A0A835Z809_9STRA (Uncharacterized protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z809_9STRA)

HSP 1 Score: 193 bits (491), Expect = 1.300e-61
Identity = 88/111 (79.28%), Postives = 100/111 (90.09%), Query Frame = 1 
Query:    1 RRTVLEAALSAHGLTIRPDSGLCRGYIHNTLEPHYTPDVIAFICGLHKYLYECTDYGAWCSDTILRLARMLAPSMGSYESALTYAKKHEVPILKAETLSEYGMPDVWPWLQ 333
            RR VLEAAL++ GLTIRPDSGLCR YIH  LE +YTP++I+FICGLHKYLYE TDYG  CSD I RLARMLAPSMGSYE+ALTYAKKHEVPI+KAETLS+YG+P++WPWLQ
Sbjct:    9 RRAVLEAALASQGLTIRPDSGLCRAYIHGMLEAYYTPELISFICGLHKYLYEYTDYGLRCSDIIPRLARMLAPSMGSYEAALTYAKKHEVPIIKAETLSKYGLPEIWPWLQ 119
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BLAST of jgi.p|Trimin1|151251 vs. uniprot
Match: A0A835Z4P0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4P0_9STRA)

HSP 1 Score: 147 bits (370), Expect = 5.920e-43
Identity = 64/110 (58.18%), Postives = 84/110 (76.36%), Query Frame = 1 
Query:    1 RRTVLEAALSAHGLTIRPDSGLCRGYIHNTLEPHYTPDVIAFICGLHKYLYECTDYGAWCSDTILRLARMLAPSMGSYESALTYAKKHEVPILKAETLSEYGMPDVWPWL 330
            RR  LE  L A GL +R DS LCR YI  +L+  YTP++IAFICG+HKYLYE TDY   C++ + R+ARMLAP++G YE+AL Y KK+E P+LKAE+L+++G+P  WPWL
Sbjct:    6 RRQELEDVLKAQGLDLRSDSALCRAYICGSLDSFYTPELIAFICGVHKYLYEYTDYAQKCAEILPRVARMLAPALGGYENALVYTKKYETPMLKAESLAKFGLPSTWPWL 115
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|151251 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A835ZBD3_9STRA9.340e-82100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A835Z809_9STRA1.300e-6179.28Uncharacterized protein n=2 Tax=Tribonema minus Ta... [more]
A0A835Z4P0_9STRA5.920e-4358.18Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_117contigContig_117:147140..147475 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|151251|gw1.117.96.1
Hectar predicted targeting categoryother localisation
TranscriptId151573
TrackFilteredModels1
ProteinId151251
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|151251gene_5035Tribonema minus UTEX_B_3156 geneContig_117 147140..147475 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_5035_1exon_5035_1Tribonema minus UTEX_B_3156 exonContig_117 147140..147475 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_5035CDS_5035Tribonema minus UTEX_B_3156 CDSContig_117 147140..147475 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|151251Trimin1|151251|gw1.117.96.1Tribonema minus UTEX_B_3156 polypeptideContig_117 147140..147475 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_5035 ID=mRNA_5035|Name=jgi.p|Trimin1|151251|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=336bp|location=Sequence derived from alignment at Contig_117:147140..147475- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
AGGCGTACTGTGCTCGAGGCGGCTCTGAGTGCACATGGTCTGACGATACG
TCCAGACTCGGGCTTATGCCGTGGGTACATTCACAACACGCTAGAGCCTC
ATTACACTCCTGACGTGATCGCTTTTATTTGTGGGCTGCACAAATACTTG
TACGAGTGCACGGACTACGGAGCATGGTGTTCAGATACTATACTGCGTCT
GGCACGGATGCTAGCGCCGTCAATGGGAAGCTACGAATCAGCTCTGACAT
ACGCCAAGAAGCATGAGGTGCCAATTCTTAAGGCGGAGACTCTTTCAGAG
TATGGTATGCCAGATGTTTGGCCATGGCTGCAGCAC
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protein sequence of jgi.p|Trimin1|151251

>Trimin1|151251|gw1.117.96.1 ID=Trimin1|151251|gw1.117.96.1|Name=jgi.p|Trimin1|151251|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=112bp
RRTVLEAALSAHGLTIRPDSGLCRGYIHNTLEPHYTPDVIAFICGLHKYL
YECTDYGAWCSDTILRLARMLAPSMGSYESALTYAKKHEVPILKAETLSE
YGMPDVWPWLQH
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mRNA from alignment at Contig_117:147140..147475-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5035 ID=mRNA_5035|Name=jgi.p|Trimin1|151251|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=336bp|location=Sequence derived from alignment at Contig_117:147140..147475- (Tribonema minus UTEX_B_3156 )
AGGCGTACTGTGCTCGAGGCGGCTCTGAGTGCACATGGTCTGACGATACG
TCCAGACTCGGGCTTATGCCGTGGGTACATTCACAACACGCTAGAGCCTC
ATTACACTCCTGACGTGATCGCTTTTATTTGTGGGCTGCACAAATACTTG
TACGAGTGCACGGACTACGGAGCATGGTGTTCAGATACTATACTGCGTCT
GGCACGGATGCTAGCGCCGTCAATGGGAAGCTACGAATCAGCTCTGACAT
ACGCCAAGAAGCATGAGGTGCCAATTCTTAAGGCGGAGACTCTTTCAGAG
TATGGTATGCCAGATGTTTGGCCATGGCTGCAGCAC
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Coding sequence (CDS) from alignment at Contig_117:147140..147475-

>mRNA_5035 ID=mRNA_5035|Name=jgi.p|Trimin1|151251|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=336bp|location=Sequence derived from alignment at Contig_117:147140..147475- (Tribonema minus UTEX_B_3156 )
AGGCGTACTGTGCTCGAGGCGGCTCTGAGTGCACATGGTCTGACGATACG
TCCAGACTCGGGCTTATGCCGTGGGTACATTCACAACACGCTAGAGCCTC
ATTACACTCCTGACGTGATCGCTTTTATTTGTGGGCTGCACAAATACTTG
TACGAGTGCACGGACTACGGAGCATGGTGTTCAGATACTATACTGCGTCT
GGCACGGATGCTAGCGCCGTCAATGGGAAGCTACGAATCAGCTCTGACAT
ACGCCAAGAAGCATGAGGTGCCAATTCTTAAGGCGGAGACTCTTTCAGAG
TATGGTATGCCAGATGTTTGGCCATGGCTGCAGCAC
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