mRNA_5000 (mRNA) Tribonema minus UTEX_B_3156
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Overview
Homology
BLAST of jgi.p|Trimin1|348413 vs. uniprot
Match: A0A835Z031_9STRA (Uncharacterized protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z031_9STRA) HSP 1 Score: 360 bits (924), Expect = 7.800e-126 Identity = 182/182 (100.00%), Postives = 182/182 (100.00%), Query Frame = 1
Query: 1 MFRSLMQRASRAPTEASFQGARKGLLDALVDAGASDDDVMKYLNDTIYPIRERWAFCYRLGVLTLGINSTQRCEGYFGILKAELLKVTTLCHLKQTLENITARYTSEDHLYMEATVRTAAYDVALEGMDSCLQAIYRNLLLVARQDGTYHCFKSLVSQVRSADRYSVRTCARESVLTVNSDA 546
MFRSLMQRASRAPTEASFQGARKGLLDALVDAGASDDDVMKYLNDTIYPIRERWAFCYRLGVLTLGINSTQRCEGYFGILKAELLKVTTLCHLKQTLENITARYTSEDHLYMEATVRTAAYDVALEGMDSCLQAIYRNLLLVARQDGTYHCFKSLVSQVRSADRYSVRTCARESVLTVNSDA
Sbjct: 1 MFRSLMQRASRAPTEASFQGARKGLLDALVDAGASDDDVMKYLNDTIYPIRERWAFCYRLGVLTLGINSTQRCEGYFGILKAELLKVTTLCHLKQTLENITARYTSEDHLYMEATVRTAAYDVALEGMDSCLQAIYRNLLLVARQDGTYHCFKSLVSQVRSADRYSVRTCARESVLTVNSDA 182
BLAST of jgi.p|Trimin1|348413 vs. uniprot
Match: A0A835ZEP9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEP9_9STRA) HSP 1 Score: 356 bits (913), Expect = 3.710e-124 Identity = 180/182 (98.90%), Postives = 181/182 (99.45%), Query Frame = 1
Query: 1 MFRSLMQRASRAPTEASFQGARKGLLDALVDAGASDDDVMKYLNDTIYPIRERWAFCYRLGVLTLGINSTQRCEGYFGILKAELLKVTTLCHLKQTLENITARYTSEDHLYMEATVRTAAYDVALEGMDSCLQAIYRNLLLVARQDGTYHCFKSLVSQVRSADRYSVRTCARESVLTVNSDA 546
MFRSLMQRASRAPTEASFQGA KGLLDAL+DAGASDDDVMKYLNDTIYPIRERWAFCYRLGVLTLGINSTQRCEGYFGILKAELLKVTTLCHLKQTLENITARYTSEDHLYMEATVRTAAYDVALEGMDSCLQAIYRNLLLVARQDGTYHCFKSLVSQVRSADRYSVRTCARESVLTVNSDA
Sbjct: 1 MFRSLMQRASRAPTEASFQGAWKGLLDALLDAGASDDDVMKYLNDTIYPIRERWAFCYRLGVLTLGINSTQRCEGYFGILKAELLKVTTLCHLKQTLENITARYTSEDHLYMEATVRTAAYDVALEGMDSCLQAIYRNLLLVARQDGTYHCFKSLVSQVRSADRYSVRTCARESVLTVNSDA 182
BLAST of jgi.p|Trimin1|348413 vs. uniprot
Match: A0A835Z0Q7_9STRA (SWIM-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0Q7_9STRA) HSP 1 Score: 349 bits (896), Expect = 7.030e-115 Identity = 177/182 (97.25%), Postives = 179/182 (98.35%), Query Frame = 1
Query: 1 MFRSLMQRASRAPTEASFQGARKGLLDALVDAGASDDDVMKYLNDTIYPIRERWAFCYRLGVLTLGINSTQRCEGYFGILKAELLKVTTLCHLKQTLENITARYTSEDHLYMEATVRTAAYDVALEGMDSCLQAIYRNLLLVARQDGTYHCFKSLVSQVRSADRYSVRTCARESVLTVNSDA 546
MFRSLMQRA RAPTEASFQGA KGLLDALVDAGASDDDVMKYLNDTIYPIRERWAFCYRLGVLTLGINSTQRCEGYFGILKAELLKVTT C+LKQTLENITARYTSEDHLYMEATVRTAAYDVALEGMDSCLQAIYRNLLLVAR+DGTYHCFKSLVSQVRSADRYSVRTCARESVLTVNSDA
Sbjct: 159 MFRSLMQRALRAPTEASFQGAWKGLLDALVDAGASDDDVMKYLNDTIYPIRERWAFCYRLGVLTLGINSTQRCEGYFGILKAELLKVTTFCYLKQTLENITARYTSEDHLYMEATVRTAAYDVALEGMDSCLQAIYRNLLLVARRDGTYHCFKSLVSQVRSADRYSVRTCARESVLTVNSDA 340
BLAST of jgi.p|Trimin1|348413 vs. uniprot
Match: A0A836CA74_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CA74_9STRA) HSP 1 Score: 354 bits (908), Expect = 1.510e-113 Identity = 179/182 (98.35%), Postives = 181/182 (99.45%), Query Frame = 1
Query: 1 MFRSLMQRASRAPTEASFQGARKGLLDALVDAGASDDDVMKYLNDTIYPIRERWAFCYRLGVLTLGINSTQRCEGYFGILKAELLKVTTLCHLKQTLENITARYTSEDHLYMEATVRTAAYDVALEGMDSCLQAIYRNLLLVARQDGTYHCFKSLVSQVRSADRYSVRTCARESVLTVNSDA 546
MFRSLMQRASRAPTEASFQGA KGLLDALVDAGASDDDVMKYLNDTIYPIRERWAFCYRLGVLTLGINST+RCEGYFGILKAELLKVTTLCHLKQTLENITARYTSEDHLYMEATVRTAAYDVALEGMDSCLQAIYRNLLLVAR+DGTYHCFKSLVSQVRSADRYSVRTCARESVLTVNSDA
Sbjct: 284 MFRSLMQRASRAPTEASFQGAWKGLLDALVDAGASDDDVMKYLNDTIYPIRERWAFCYRLGVLTLGINSTRRCEGYFGILKAELLKVTTLCHLKQTLENITARYTSEDHLYMEATVRTAAYDVALEGMDSCLQAIYRNLLLVARRDGTYHCFKSLVSQVRSADRYSVRTCARESVLTVNSDA 465
BLAST of jgi.p|Trimin1|348413 vs. uniprot
Match: A0A835Z7W2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7W2_9STRA) HSP 1 Score: 354 bits (908), Expect = 3.270e-112 Identity = 179/182 (98.35%), Postives = 181/182 (99.45%), Query Frame = 1
Query: 1 MFRSLMQRASRAPTEASFQGARKGLLDALVDAGASDDDVMKYLNDTIYPIRERWAFCYRLGVLTLGINSTQRCEGYFGILKAELLKVTTLCHLKQTLENITARYTSEDHLYMEATVRTAAYDVALEGMDSCLQAIYRNLLLVARQDGTYHCFKSLVSQVRSADRYSVRTCARESVLTVNSDA 546
MFRSLMQRASRAPTEASFQGA KGLLDALVDAGASDDDVMKYLNDTIYPIRERWAFCYRLGVLTLGINST+RCEGYFGILKAELLKVTTLCHLKQTLENITARYTSEDHLYMEATVRTAAYDVALEGMDSCLQAIYRNLLLVAR+DGTYHCFKSLVSQVRSADRYSVRTCARESVLTVNSDA
Sbjct: 379 MFRSLMQRASRAPTEASFQGAWKGLLDALVDAGASDDDVMKYLNDTIYPIRERWAFCYRLGVLTLGINSTRRCEGYFGILKAELLKVTTLCHLKQTLENITARYTSEDHLYMEATVRTAAYDVALEGMDSCLQAIYRNLLLVARRDGTYHCFKSLVSQVRSADRYSVRTCARESVLTVNSDA 560
BLAST of jgi.p|Trimin1|348413 vs. uniprot
Match: A0A835ZD50_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZD50_9STRA) HSP 1 Score: 204 bits (518), Expect = 4.690e-63 Identity = 102/103 (99.03%), Postives = 102/103 (99.03%), Query Frame = 1
Query: 1 MFRSLMQRASRAPTEASFQGARKGLLDALVDAGASDDDVMKYLNDTIYPIRERWAFCYRLGVLTLGINSTQRCEGYFGILKAELLKVTTLCHLKQTLENITAR 309
MFRSLMQRASRAPTEASFQGA KGLLDALVDAGASDDDVMKYLNDTIYPIRERWAFCYRLGVLTLGINSTQRCEGYFGILKAELLKVTTLCHLKQTLENITAR
Sbjct: 149 MFRSLMQRASRAPTEASFQGAWKGLLDALVDAGASDDDVMKYLNDTIYPIRERWAFCYRLGVLTLGINSTQRCEGYFGILKAELLKVTTLCHLKQTLENITAR 251
BLAST of jgi.p|Trimin1|348413 vs. uniprot
Match: A0A835ZA29_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZA29_9STRA) HSP 1 Score: 201 bits (511), Expect = 9.580e-62 Identity = 101/105 (96.19%), Postives = 102/105 (97.14%), Query Frame = 1
Query: 1 MFRSLMQRASRAPTEASFQGARKGLLDALVDAGASDDDVMKYLNDTIYPIRERWAFCYRLGVLTLGINSTQRCEGYFGILKAELLKVTTLCHLKQTLENITARYT 315
MFRSLMQRASRAPTEASFQGA KGLLDAL+DAGASDDDVMKYLNDTIYPIRERWAFCYRLGVLTLGINSTQRCEGYFGILKAELLKVTTLCHLKQTLENITA T
Sbjct: 59 MFRSLMQRASRAPTEASFQGAWKGLLDALLDAGASDDDVMKYLNDTIYPIRERWAFCYRLGVLTLGINSTQRCEGYFGILKAELLKVTTLCHLKQTLENITASTT 163
BLAST of jgi.p|Trimin1|348413 vs. uniprot
Match: A0A835ZDE2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDE2_9STRA) HSP 1 Score: 174 bits (440), Expect = 7.400e-50 Identity = 88/152 (57.89%), Postives = 114/152 (75.00%), Query Frame = 1
Query: 4 FRSLMQRASRAPTEASFQGARKGLLDALVDAGASDDDVMKYLNDTIYPIRERWAFCYRLGVLTLGINSTQRCEGYFGILKAELLKVTTLCHLKQTLENITARYTSEDHLYMEATVRTAAYDVALEGMDSCLQAIYRNLLLVARQDGTYHCFK 459
F+ + RASRAPTE F A L DAL AGA+D +V+ YL++TIYPIR RWAFC+R+G+L LGINSTQRCEGYFG++KAEL+K+ TL HL +TL IT +Y S+D +YM AT R A DVA++ +D L+ +Y +LL VA+QDGT HC +
Sbjct: 218 FKHHLHRASRAPTEECFDAAWDALGDALGSAGAADAEVLGYLDNTIYPIRRRWAFCFRIGILILGINSTQRCEGYFGLIKAELVKLGTLTHLLETLARITHKYNSDDAIYMAATNR--ALDVAMKEVDPVLRIMYSSLLDVAQQDGTLHCLR 367
BLAST of jgi.p|Trimin1|348413 vs. uniprot
Match: A0A836CNV1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CNV1_9STRA) HSP 1 Score: 176 bits (446), Expect = 1.700e-49 Identity = 89/152 (58.55%), Postives = 115/152 (75.66%), Query Frame = 1
Query: 4 FRSLMQRASRAPTEASFQGARKGLLDALVDAGASDDDVMKYLNDTIYPIRERWAFCYRLGVLTLGINSTQRCEGYFGILKAELLKVTTLCHLKQTLENITARYTSEDHLYMEATVRTAAYDVALEGMDSCLQAIYRNLLLVARQDGTYHCFK 459
F+ + RASRAPTE F A L DAL AGA+D +V+ YL++TIYPIR RWAFC+R+G+LTLGINSTQRCEGYFG++KAEL+K+ TL HL +TL IT +Y S+D +YM AT R A DVA++ +D L+ +Y +LL VA+QDGT HC +
Sbjct: 356 FKHHLHRASRAPTEECFDAAWDALGDALGSAGAADAEVLGYLDNTIYPIRRRWAFCFRIGILTLGINSTQRCEGYFGLIKAELVKLGTLTHLLETLARITHKYNSDDAIYMAATNR--ALDVAMKEVDPVLRIMYSSLLDVAQQDGTLHCLR 505
BLAST of jgi.p|Trimin1|348413 vs. uniprot
Match: A0A836CI86_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CI86_9STRA) HSP 1 Score: 174 bits (442), Expect = 3.920e-48 Identity = 91/166 (54.82%), Postives = 117/166 (70.48%), Query Frame = 1
Query: 4 FRSLMQRASRAPTEASFQGARKGLLDALVDAGASDDDVMKYLNDTIYPIRERWAFCYRLGVLTLGINSTQRCEGYFGILKAELLKVTTLCHLKQTLENITARYTSEDHLYMEATVRTAAYDVALEGMDSCLQAIYRNLLLVARQDGTYHCFKSLVSQVRSADRYSV 501
F+ ++ ASRAPTE F+ A + L L DAG ++ +V+ YL+ TIY IR RWAFC+RLGVLT+GINSTQ CEGYF LKAEL K+ TLC L TL ITARY +ED L+MEA+ R A DVA+ G+++ L++IY LL VA+ GT HC K + +V +A RY V
Sbjct: 265 FKQHLRLASRAPTERCFESAWQALHQCLADAGKAEGEVVTYLHQTIYAIRRRWAFCFRLGVLTVGINSTQHCEGYFAKLKAELEKLGTLCSLNTTLGRITARYRAEDQLHMEASTR--ALDVAVNGINAALRSIYGALLEVAKHHGTLHCLKHIAQEVGAAARYHV 428 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|348413 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 12
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_5000 ID=mRNA_5000|Name=jgi.p|Trimin1|348413|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=547bp|location=Sequence derived from alignment at Contig_23:1254530..1255346- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGTTCAGGAGCCTTATGCAGCGCGCATCGCGTGCTCCTACGGAAGCCAGback to top protein sequence of jgi.p|Trimin1|348413 >Trimin1|348413|estExt_Genemark1.C_Ctg_230145 ID=Trimin1|348413|estExt_Genemark1.C_Ctg_230145|Name=jgi.p|Trimin1|348413|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=182bp MFRSLMQRASRAPTEASFQGARKGLLDALVDAGASDDDVMKYLNDTIYPIback to top mRNA from alignment at Contig_23:1254530..1255346- Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_5000 ID=mRNA_5000|Name=jgi.p|Trimin1|348413|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=817bp|location=Sequence derived from alignment at Contig_23:1254530..1255346- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_23:1254530..1255346- >mRNA_5000 ID=mRNA_5000|Name=jgi.p|Trimin1|348413|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=546bp|location=Sequence derived from alignment at Contig_23:1254530..1255346- (Tribonema minus UTEX_B_3156 )back to top |