mRNA_4998 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|139848 vs. uniprot
Match: A0A835Z0W7_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0W7_9STRA) HSP 1 Score: 416 bits (1070), Expect = 3.620e-147 Identity = 210/210 (100.00%), Postives = 210/210 (100.00%), Query Frame = 1 Query: 1 GLPPDVKSHNLALYAWCSDGAMQNADRILASMAAAGVAPDRQTFEGVLQACWYARDWHRAIDVFFDMEANHPEFADAQMWNRLLKVVYACAAPESTLEVAALMAELGVVPITATYTFILQAYARLGDGDAIESVLLSMRAAGEQVTPKTMAVLANGYANGRHMVAAEEALEAVLNSGIPINQRVRTVTAFVHACSRAGDLPRIVRWLRRL 630 GLPPDVKSHNLALYAWCSDGAMQNADRILASMAAAGVAPDRQTFEGVLQACWYARDWHRAIDVFFDMEANHPEFADAQMWNRLLKVVYACAAPESTLEVAALMAELGVVPITATYTFILQAYARLGDGDAIESVLLSMRAAGEQVTPKTMAVLANGYANGRHMVAAEEALEAVLNSGIPINQRVRTVTAFVHACSRAGDLPRIVRWLRRL Sbjct: 1 GLPPDVKSHNLALYAWCSDGAMQNADRILASMAAAGVAPDRQTFEGVLQACWYARDWHRAIDVFFDMEANHPEFADAQMWNRLLKVVYACAAPESTLEVAALMAELGVVPITATYTFILQAYARLGDGDAIESVLLSMRAAGEQVTPKTMAVLANGYANGRHMVAAEEALEAVLNSGIPINQRVRTVTAFVHACSRAGDLPRIVRWLRRL 210
BLAST of jgi.p|Trimin1|139848 vs. uniprot
Match: A0A835Z7V6_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7V6_9STRA) HSP 1 Score: 275 bits (704), Expect = 2.370e-91 Identity = 142/210 (67.62%), Postives = 171/210 (81.43%), Query Frame = 1 Query: 1 GLPPDVKSHNLALYAWCSDGAMQNADRILASMAAAGVAPDRQTFEGVLQACWYARDWHRAIDVFFDMEANHPEFADAQMWNRLLKVVYACAAPESTLEVAALMAELGVVPITATYTFILQAYARLGDGDAIESVLLSMRAAGEQVTPKTMAVLANGYANGRHMVAAEEALEAVLNSGIPINQRVRTVTAFVHACSRAGDLPRIVRWLRRL 630 GLPP++ ++N+AL+A S A+Q ADRILASMAAA VAP+ +TF G+L+AC A+DW RA++VFFDMEA HPEFA+ MW+RL++V+YACAAPESTL+ AALMAELGV P TATY +L A+ARLGDGDAIESVL SMRAAGE+VT ++A L GYA+G H AAEEALEA+ NSG PI R+ +VT FV AC AGDLPRIVRWLRRL Sbjct: 5 GLPPNLAAYNVALHACRSSEAVQQADRILASMAAASVAPNGRTFAGLLRACKMAKDWRRAVNVFFDMEAKHPEFANVYMWSRLVQVLYACAAPESTLDAAALMAELGVTPTTATYNMVLWAHARLGDGDAIESVLSSMRAAGEEVTFLSLAALTRGYAHGWHWDAAEEALEALFNSGSPIGVRMDSVTVFVKACDHAGDLPRIVRWLRRL 214
BLAST of jgi.p|Trimin1|139848 vs. uniprot
Match: A0A835Z0G4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0G4_9STRA) HSP 1 Score: 273 bits (698), Expect = 1.330e-83 Identity = 146/188 (77.66%), Postives = 156/188 (82.98%), Query Frame = 1 Query: 67 QNADRILASMAAAGVAPDRQTFEGVLQACWYARDWHRAIDVFFDMEANHPEFADAQMWNRLLKVVYACAAPESTLEVAALMAELGVVPITATYTFILQAYARLGDGDAIESVLLSMRAAGEQVTPKTMAVLANGYANGRHMVAAEEALEAVLNSGIPINQRVRTVTAFVHACSRAGDLPRIVRWLRRL 630 +NADRILASMAAAGVAPDR TF GVL+AC A+DW RAIDVFF+MEANHPEFAD QMWNRLLKVVYACAAPESTLEVAALMAE GVVPITATY +L A+A GD A++SVL SMRA GEQVT T+A LA GYA+G H AAEEALEAVLNS P RV VTAFVHAC RA DLPRIVRWLRRL Sbjct: 19 KNADRILASMAAAGVAPDRHTFVGVLRACRLAQDWRRAIDVFFNMEANHPEFADVQMWNRLLKVVYACAAPESTLEVAALMAERGVVPITATYNAVLGAHAMRGDSVAVQSVLSSMRAVGEQVTFATLATLAKGYAHGGHWDAAEEALEAVLNSDRPTPVRVNAVTAFVHACGRARDLPRIVRWLRRL 206
BLAST of jgi.p|Trimin1|139848 vs. uniprot
Match: A0A835Z021_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z021_9STRA) HSP 1 Score: 238 bits (607), Expect = 6.120e-77 Identity = 125/179 (69.83%), Postives = 141/179 (78.77%), Query Frame = 1 Query: 94 MAAAGVAPDRQTFEGVLQACWYARDWHRAIDVFFDMEANHPEFADAQMWNRLLKVVYACAAPESTLEVAALMAELGVVPITATYTFILQAYARLGDGDAIESVLLSMRAAGEQVTPKTMAVLANGYANGRHMVAAEEALEAVLNSGIPINQRVRTVTAFVHACSRAGDLPRIVRWLRRL 630 MAAAG+APD +TF GVLQ C +ARDW RAI VFFDMEA HPEFADA WNRLL+V+Y AP+STL AALMA+ GVVPITATY +L A+A GD AI+ VL SMRAAGE+VT T+A+ A GY GRH AAE+ALEAVLNS I RV+T TAFVHACSRAGDLPRIVRWL+RL Sbjct: 1 MAAAGIAPDGRTFAGVLQTCRHARDWRRAIYVFFDMEAKHPEFADAHTWNRLLQVLYVHPAPDSTLAAAALMAQRGVVPITATYNTVLWAHAMRGDSAAIKKVLTSMRAAGEEVTLTTLAMCAKGYGYGRHWGAAEDALEAVLNSDSTITMRVQTATAFVHACSRAGDLPRIVRWLQRL 179
BLAST of jgi.p|Trimin1|139848 vs. uniprot
Match: A0A835Z2Y9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2Y9_9STRA) HSP 1 Score: 221 bits (564), Expect = 2.530e-66 Identity = 124/210 (59.05%), Postives = 140/210 (66.67%), Query Frame = 1 Query: 1 GLPPDVKSHNLALYAWCSDGAMQNADRILASMAAAGVAPDRQTFEGVLQACWYARDWHRAIDVFFDMEANHPEFADAQMWNRLLKVVYACAAPESTLEVAALMAELGVVPITATYTFILQAYARLGDGDAIESVLLSMRAAGEQVTPKTMAVLANGYANGRHMVAAEEALEAVLNSGIPINQRVRTVTAFVHACSRAGDLPRIVRWLRRL 630 G+P ++NLAL A A+ ADRIL YA+DW RAIDVFF MEAN P FAD WNRLL+V+ AC+AP STL AALMAE GV PI TY ILQAYA LGDG AIESVL MRAAGE+VTPKT+AVLANGYAN MVAAE ALEA LN ++ R+ VT F++AC RAGDLPR+VRWLRRL Sbjct: 215 GVPAISTTYNLALRACRDSAAVHQADRILXXXXXXXXXXXXXXXXXXXXXXRYAQDWRRAIDVFFAMEANLPAFADVYTWNRLLRVLSACSAPRSTLAAAALMAERGVAPIALTYMLILQAYAMLGDGAAIESVLSIMRAAGEEVTPKTLAVLANGYANSGRMVAAEGALEAALNCDCHVSARMEAVTFFMNACGRAGDLPRVVRWLRRL 424
BLAST of jgi.p|Trimin1|139848 vs. uniprot
Match: A0A835Z7U6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7U6_9STRA) HSP 1 Score: 215 bits (548), Expect = 5.740e-61 Identity = 121/209 (57.89%), Postives = 145/209 (69.38%), Query Frame = 1 Query: 4 LPPDVKSHNLALYAWCSDGAMQNADRILASMAAAGVAPDRQTFEGVLQACWYARDWHRAIDVFFDMEANHPEFADAQMWNRLLKVVYACAAPESTLEVAALMAELGVVPITATYTFILQAYARLGDGDAIESVLLSMRAAGEQVTPKTMAVLANGYANGRHMVAAEEALEAVLNSGIPINQRVRTVTAFVHACSRAGDLPRIVRWLRRL 630 LP D+ +++LAL S A+Q ADRILASMAAA VA D TF G L+ C A+DW RAI+VF D+EANHP F D MWNRLL+ + A P+S L AA MAE GV P T +L+A+A LGD A+E VL SMR AGE+VT ++AVLA GYA G H AAEEALEA+ N P R++TVT F+ +C RAGDLPRIVRWLRRL Sbjct: 41 LPLDITTYSLALRGCRSSDAVQQADRILASMAAARVALDGGTFAGALRTCKVAQDWRRAINVFRDIEANHPAFVDVNMWNRLLQALCASEVPQSALAAAAQMAERGVAPTRETRLVLLKAHATLGDTAAVERVLSSMRVAGEEVTFLSLAVLAKGYACGGHWEAAEEALEALFNIYSPDQLRMQTVTNFLSSCCRAGDLPRIVRWLRRL 249
BLAST of jgi.p|Trimin1|139848 vs. uniprot
Match: A0A835ZHN3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZHN3_9STRA) HSP 1 Score: 197 bits (501), Expect = 2.060e-56 Identity = 102/158 (64.56%), Postives = 117/158 (74.05%), Query Frame = 1 Query: 157 YARDWHRAIDVFFDMEANHPEFADAQMWNRLLKVVYACAAPESTLEVAALMAELGVVPITATYTFILQAYARLGDGDAIESVLLSMRAAGEQVTPKTMAVLANGYANGRHMVAAEEALEAVLNSGIPINQRVRTVTAFVHACSRAGDLPRIVRWLRRL 630 Y+RDW RA++VF DMEANHPEFAD MWNRLL+V+ C P +TL+VAA MAE G P TATY +LQA+A LGDG A+ESVL SM AAGE VT A LA GY G HM AAEEALEAVL+S +N R VT F++AC AGDLPRIVRWL+RL Sbjct: 141 YSRDWRRALEVFRDMEANHPEFADVHMWNRLLQVLVVCTVPRTTLKVAADMAERGFAPTTATYMILLQAHAALGDGAAVESVLSSMHAAGEDVTFAARAALAKGYVYGGHMEAAEEALEAVLSSDSAVNVRTDAVTLFMNACGSAGDLPRIVRWLQRL 298
BLAST of jgi.p|Trimin1|139848 vs. uniprot
Match: A0A835ZBY4_9STRA (PPR_long domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBY4_9STRA) HSP 1 Score: 161 bits (408), Expect = 4.080e-47 Identity = 91/160 (56.88%), Postives = 108/160 (67.50%), Query Frame = 1 Query: 1 GLPPDVKSHNLALYAWCSDGAMQNADRILASMAAAGVAPDRQTFEGVLQACWYARDWHRAIDVFFDMEANHPEFADAQMWNRLLKVVYACAAPESTLEVAALMAELGVVPITATYTFILQAYARLGDGDAIESVLLSMRAAGEQVTPKTMAVLANGYANG 480 G+P ++ ++NLAL A + A+Q ADRILASMAAAG RDW RAIDVF DMEANH F DA MWN LL+V+ AC AP+STL+ AA MAE G P T TY + QA+A LGDG AIESVL SM AAG++V PKT+ VLA GYA+G Sbjct: 5 GVPTNLTTYNLALKACRNSEAVQQADRILASMAAAGXXXXXXXXXXXXXXXXXXRDWRRAIDVFRDMEANHLAFVDAGMWNCLLEVLSACTAPQSTLDAAAQMAERGFAPTTTTYMALFQAHATLGDGAAIESVLSSMHAAGKEVMPKTLVVLAIGYAHG 164
BLAST of jgi.p|Trimin1|139848 vs. uniprot
Match: A0A835ZAQ1_9STRA (PPR_long domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAQ1_9STRA) HSP 1 Score: 160 bits (405), Expect = 5.850e-47 Identity = 87/138 (63.04%), Postives = 104/138 (75.36%), Query Frame = 1 Query: 1 GLPPDVKSHNLALYAWCSDGAMQNADRILASMAAAGVAPDRQTFEGVLQACWYARDWHRAIDVFFDMEANHPEFADAQMWNRLLKVVYACAAPESTLEVAALMAELGVVPITATYTFILQAYARLGDGDAIESVLLSM 414 G+P ++ ++NLA A + A+Q ADRILAS+AAAGVAP+R+TF VL+AC Y+RDW RAIDVF DMEANHP F DA MWN LL+V+ A A ESTL+ AA MAE G P T TY +LQA+A LGDG AIESVL SM Sbjct: 5 GVPANLTTYNLAFNACRNSEAVQQADRILASIAAAGVAPNRRTFARVLRACRYSRDWRRAIDVFRDMEANHPVFVDAGMWNCLLEVLSAYPAAESTLDAAAQMAESGFAPTTTTYMVLLQAHATLGDGAAIESVLSSM 142
BLAST of jgi.p|Trimin1|139848 vs. uniprot
Match: A0A835Z225_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z225_9STRA) HSP 1 Score: 152 bits (383), Expect = 1.860e-39 Identity = 89/214 (41.59%), Postives = 118/214 (55.14%), Query Frame = 1 Query: 1 GLPPDVKSHNLALYAWCSDGAMQNADRILASMAAAGVAPDRQTFEGVLQACWYARDWHRAIDVFFDMEANHPEFADAQMWNRLLKVVYACAAPESTLEVAALMAELGVVPITATYTFILQAYARLGDGDAIESVLLSMRAAGEQVTPKTMAVLANGYANGRHMVAAEEALEAVLNSG----IPINQRVRTVTAFVHACSRAGDLPRIVRWLRRL 630 G PPD+ ++NLAL+ C A+ +AD+ILA MAA G+AP+R TF G+L+AC A+D RA+ VF +EA++P DA MW LL + C P++ L AA MAE G++P A Y I +A+A LGDG A E+ L SMR +ALEA S + + AF+ AC RA DLPR +RWLRRL Sbjct: 167 GTPPDLTAYNLALHTCCGSSAVLHADKILADMAAMGLAPNRHTFRGMLRACKQAQDCERALAVFRSVEAHYPVDVDADMWICLLDALSVCRQPQAVLTAAARMAERGLLPTAAIYVVIAKAHAELGDGAAAETALSSMRXXXXXXXXXXXXXXXXXXXXXXXXXXXXQALEAAFRSSSTGAAATTAHMHAILAFMGACRRARDLPRALRWLRRL 380 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|139848 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 19
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_4998 ID=mRNA_4998|Name=jgi.p|Trimin1|139848|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=630bp|location=Sequence derived from alignment at Contig_23:1226065..1226694- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. GGGTTGCCGCCCGACGTCAAGTCGCACAACCTGGCGCTGTATGCGTGGTGback to top protein sequence of jgi.p|Trimin1|139848 >Trimin1|139848|gw1.23.135.1 ID=Trimin1|139848|gw1.23.135.1|Name=jgi.p|Trimin1|139848|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=210bp GLPPDVKSHNLALYAWCSDGAMQNADRILASMAAAGVAPDRQTFEGVLQAback to top mRNA from alignment at Contig_23:1226065..1226694- Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_4998 ID=mRNA_4998|Name=jgi.p|Trimin1|139848|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=630bp|location=Sequence derived from alignment at Contig_23:1226065..1226694- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_23:1226065..1226694- >mRNA_4998 ID=mRNA_4998|Name=jgi.p|Trimin1|139848|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=630bp|location=Sequence derived from alignment at Contig_23:1226065..1226694- (Tribonema minus UTEX_B_3156 )back to top |