mRNA_4995 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|162898 vs. uniprot
Match: A0A836CGG7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGG7_9STRA) HSP 1 Score: 201 bits (511), Expect = 1.380e-65 Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 1 Query: 1 DLYHATAGDQWWRAERWLAPGSEVRKWYGIGVRHGALTSLRLPNNNLSGALPQTLGGLAALRALDLSFNKALRGRVPRCVGALTRLRVGTASELSSL 291 DLYHATAGDQWWRAERWLAPGSEVRKWYGIGVRHGALTSLRLPNNNLSGALPQTLGGLAALRALDLSFNKALRGRVPRCVGALTRLRVGTASELSSL Sbjct: 1 DLYHATAGDQWWRAERWLAPGSEVRKWYGIGVRHGALTSLRLPNNNLSGALPQTLGGLAALRALDLSFNKALRGRVPRCVGALTRLRVGTASELSSL 97
BLAST of jgi.p|Trimin1|162898 vs. uniprot
Match: A0A836CFP3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFP3_9STRA) HSP 1 Score: 131 bits (330), Expect = 1.990e-34 Identity = 68/93 (73.12%), Postives = 69/93 (74.19%), Query Frame = 1 Query: 1 DLYHATAGDQWWRAERWLAPGSEVRK-----WYGIGVRHGALTSLRLPNNNLSGALPQTLGGLAALRALDLSFNKALRGRVPRCVGALTRLRV 264 DLYHATAGDQWWRAERWLAP SEVRK WYGIGVRHGALT GGLAALRALDLSFNKALRGR PRCVGALTRLR+ Sbjct: 90 DLYHATAGDQWWRAERWLAPNSEVRKGEVRRWYGIGVRHGALTRW---------------GGLAALRALDLSFNKALRGRAPRCVGALTRLRI 167
BLAST of jgi.p|Trimin1|162898 vs. uniprot
Match: A0A835Z715_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z715_9STRA) HSP 1 Score: 114 bits (284), Expect = 2.510e-27 Identity = 54/87 (62.07%), Postives = 63/87 (72.41%), Query Frame = 1 Query: 1 DLYHATAGDQWWRAERWLAPGSEVRKWYGIGVRHGALTSLRLPNNNLSGALPQTLGGLAALRALDLSFNKALRGRVPRCVGALTRLR 261 D+Y AT G +W RA WLAPGSEVR WYG GV GALT+LRLP N L GALP +LG L L LDLS+N+ L G +P C+GAL +LR Sbjct: 260 DVYAATGGPRWKRAHWWLAPGSEVRLWYGAGVERGALTALRLPKNGLRGALPPSLGNLPTLVLLDLSYNRRLGGELPACLGALAQLR 346
BLAST of jgi.p|Trimin1|162898 vs. uniprot
Match: UPI001B39EBFE (immunoglobulin domain-containing protein n=1 Tax=Aquimarina sp. MMG016 TaxID=2822690 RepID=UPI001B39EBFE) HSP 1 Score: 67.4 bits (163), Expect = 5.830e-11 Identity = 34/75 (45.33%), Postives = 48/75 (64.00%), Query Frame = 1 Query: 1 DLYHATAGDQW---------WRAERWLAPGSEVRKWYGIGVRHGALTSLRLPNNNLSGALPQTLGGLAALRALDL 198 DLY+AT GDQW W+ + P S+V WYGI V +G +T+++L NN LSGALP ++G L+ L++L L Sbjct: 38 DLYNATYGDQWKNTVANNKTWQVQD---PTSDVSSWYGITVANGTVTAIKLANNGLSGALPNSIGNLSGLKSLYL 109
BLAST of jgi.p|Trimin1|162898 vs. uniprot
Match: A0A1H7FWX1_9FLAO (Leucine-rich repeat (LRR) protein n=1 Tax=Aquimarina amphilecti TaxID=1038014 RepID=A0A1H7FWX1_9FLAO) HSP 1 Score: 62.0 bits (149), Expect = 4.580e-9 Identity = 33/73 (45.21%), Postives = 44/73 (60.27%), Query Frame = 1 Query: 1 DLYHATAGDQWWRA----ERWLA--PGSEVRKWYGIGVRHGALTSLRLPNNNLSGALPQTLGGLAALRALDLS 201 DLY++T GD W + WL P S V W+G+ V +G+LT L LPNNNL+G LP ++G L LR +S Sbjct: 44 DLYNSTDGDNWTNTVSGNKPWLINDPTSLVSDWFGVVVENGSLTKLFLPNNNLTGNLPPSIGDLINLRDFSMS 116
BLAST of jgi.p|Trimin1|162898 vs. uniprot
Match: A0A7S4FEV1_9EUGL (Hypothetical protein (Fragment) n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4FEV1_9EUGL) HSP 1 Score: 59.7 bits (143), Expect = 9.500e-9 Identity = 26/62 (41.94%), Postives = 39/62 (62.90%), Query Frame = 1 Query: 1 DLYHATAGDQWWRAERWLAPGSEVRKWYGIGVRHGALTSLRLPNNNLSGALPQTLGGLAALR 186 D+YHAT G W + + WL+ +W G+ + G + LRL NN ++GALP++LG L+ LR Sbjct: 10 DVYHATGGANWKKNDGWLSEDPCSTEWRGVTCKDGVVRKLRLVNNKVTGALPESLGKLSGLR 71
BLAST of jgi.p|Trimin1|162898 vs. uniprot
Match: UPI001BB21DAC (leucine-rich repeat domain-containing protein n=1 Tax=Larkinella sp. C7 TaxID=2576607 RepID=UPI001BB21DAC) HSP 1 Score: 60.5 bits (145), Expect = 1.470e-8 Identity = 28/66 (42.42%), Postives = 40/66 (60.61%), Query Frame = 1 Query: 1 DLYHATAGDQWWRAERWLAPGSEVRKWYGIGVRHGALTSLRLPNNNLSGALPQTLGGLAALRALDL 198 DLY+AT G W RA++WL + WYG+ + +T + L N LSG LP++LG L +L+ L L Sbjct: 54 DLYNATNGSGWKRADKWLTDNNPCG-WYGVSCTNNRVTDIYLSENKLSGTLPESLGNLTSLKNLSL 118
BLAST of jgi.p|Trimin1|162898 vs. uniprot
Match: A0A7S4NRK8_9EUKA (Hypothetical protein n=1 Tax=Paramoeba aestuarina TaxID=180227 RepID=A0A7S4NRK8_9EUKA) HSP 1 Score: 58.9 bits (141), Expect = 3.330e-8 Identity = 27/86 (31.40%), Postives = 46/86 (53.49%), Query Frame = 1 Query: 1 DLYHATAGDQWWRAERWL---------APGSEVRKWYGIGVRHGALTSLRLPNNNLSGALPQTLGGLAALRALDLSFNKALRGRVP 231 + YH+T G+ W++++ WL S WY + G + ++ +PNNN+SG LP +LG L +L +S N+ + G +P Sbjct: 31 EFYHSTKGESWFKSDNWLDGPPCGDDALESSNKGGWYSLSCAGGRVVAINMPNNNMSGTLPSSLGDFTKLLSLVVSNNQ-IGGEIP 115
BLAST of jgi.p|Trimin1|162898 vs. uniprot
Match: A0A2G6ND34_9DELT (Two component regulator three Y domain protein n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A2G6ND34_9DELT) HSP 1 Score: 58.5 bits (140), Expect = 4.380e-8 Identity = 27/63 (42.86%), Postives = 38/63 (60.32%), Query Frame = 1 Query: 1 DLYHATAGDQWWRAERWLAPGSEVRKWYGIGVRHG--ALTSLRLPNNNLSGALPQTLGGLAAL 183 DLY+AT G QW + W PG+ V WYG+ A+ +L LP NNL+G +P+++G L L Sbjct: 13 DLYNATHGVQWESQDNWKVPGTHVCDWYGVTCNSDSTAVIALELPENNLTGDMPESIGNLTNL 75
BLAST of jgi.p|Trimin1|162898 vs. uniprot
Match: A0A0C1YQA0_9CYAN (Peptidase_S8 domain-containing protein (Fragment) n=1 Tax=Lyngbya confervoides BDU141951 TaxID=1574623 RepID=A0A0C1YQA0_9CYAN) HSP 1 Score: 58.9 bits (141), Expect = 4.920e-8 Identity = 29/68 (42.65%), Postives = 40/68 (58.82%), Query Frame = 1 Query: 4 LYHATAGDQWWRAERWLAPGSEVRKWYGIGVRHGALTSLRLPNNNLSGALPQTLGGLAALRALDLSFN 207 LY T G W + WL + V +W GI V + ++RLP+NNL+GA+P + L AL A+DLS N Sbjct: 32 LYEETNGTNWANDDNWLT--APVSQWNGITVTDNRIQAIRLPDNNLTGAVPNAVSTLIALEAIDLSGN 97 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|162898 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_4995 ID=mRNA_4995|Name=jgi.p|Trimin1|162898|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=294bp|location=Sequence derived from alignment at Contig_23:1201446..1201739+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. GACCTCTACCACGCCACCGCCGGCGACCAGTGGTGGCGCGCGGAGCGCTGback to top protein sequence of jgi.p|Trimin1|162898 >Trimin1|162898|e_gw1.23.238.1 ID=Trimin1|162898|e_gw1.23.238.1|Name=jgi.p|Trimin1|162898|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=98bp DLYHATAGDQWWRAERWLAPGSEVRKWYGIGVRHGALTSLRLPNNNLSGAback to top mRNA from alignment at Contig_23:1201446..1201739+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_4995 ID=mRNA_4995|Name=jgi.p|Trimin1|162898|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=294bp|location=Sequence derived from alignment at Contig_23:1201446..1201739+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_23:1201446..1201739+ >mRNA_4995 ID=mRNA_4995|Name=jgi.p|Trimin1|162898|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=294bp|location=Sequence derived from alignment at Contig_23:1201446..1201739+ (Tribonema minus UTEX_B_3156 )back to top |