mRNA_4987 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|163062
Unique NamemRNA_4987
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|163062 vs. uniprot
Match: A0A835Z4Q7_9STRA (Sas10 C-terminal domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4Q7_9STRA)

HSP 1 Score: 146 bits (368), Expect = 2.030e-44
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 1 
Query:    1 GGKRAASYEIIKNRGLTPHKSKLNRNPRVKKREAYRKAVIRRKGQVREVRTNEAGRYAGEGTGIRSTVTRGRKFAS 228
            GGKRAASYEIIKNRGLTPHKSKLNRNPRVKKREAYRKAVIRRKGQVREVRTNEAGRYAGEGTGIRSTVTRGRKFAS
Sbjct:    1 GGKRAASYEIIKNRGLTPHKSKLNRNPRVKKREAYRKAVIRRKGQVREVRTNEAGRYAGEGTGIRSTVTRGRKFAS 76
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BLAST of jgi.p|Trimin1|163062 vs. uniprot
Match: A0A8K1FNF9_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FNF9_PYTOL)

HSP 1 Score: 109 bits (273), Expect = 2.040e-26
Identity = 56/74 (75.68%), Postives = 62/74 (83.78%), Query Frame = 1 
Query:    1 GGKRAASYEIIKNRGLTPHKSKLNRNPRVKKREAYRKAVIRRKGQVREVRTNEAGRYAGEGTGIRSTVTRGRKF 222
            GGKR AS+EIIKN+GL  HK+KLNRNPRVKKR  YRKAVIRRKGQVR+VR  EAGRY GE TGI+S +TR RK 
Sbjct:  432 GGKRGASFEIIKNKGLKAHKNKLNRNPRVKKRMQYRKAVIRRKGQVRDVRVGEAGRYGGESTGIKSNLTRSRKL 505
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BLAST of jgi.p|Trimin1|163062 vs. uniprot
Match: A0A662YAX8_9STRA (Sas10 domain-containing protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662YAX8_9STRA)

HSP 1 Score: 108 bits (269), Expect = 7.910e-26
Identity = 55/74 (74.32%), Postives = 62/74 (83.78%), Query Frame = 1 
Query:    1 GGKRAASYEIIKNRGLTPHKSKLNRNPRVKKREAYRKAVIRRKGQVREVRTNEAGRYAGEGTGIRSTVTRGRKF 222
            GGKR ASY+I+KN+GL  HKSKLNRNPRVKKR  YRKAVIRRKGQVR+VR  EAG+Y GE TGI+S +TR RK 
Sbjct:  446 GGKRGASYQIMKNKGLKAHKSKLNRNPRVKKRMQYRKAVIRRKGQVRDVRVGEAGKYGGETTGIKSNLTRSRKI 519
[Close]
BLAST of jgi.p|Trimin1|163062 vs. uniprot
Match: A0A3R7JAC9_9STRA (Sas10 domain-containing protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7JAC9_9STRA)

HSP 1 Score: 106 bits (265), Expect = 1.340e-25
Identity = 55/73 (75.34%), Postives = 61/73 (83.56%), Query Frame = 1 
Query:    4 GKRAASYEIIKNRGLTPHKSKLNRNPRVKKREAYRKAVIRRKGQVREVRTNEAGRYAGEGTGIRSTVTRGRKF 222
            GKR ASY+IIKN+GL  HKSKLNRNPRVKKR  YRKAVIRRKGQVR+VR  EAG+Y GE TGI+S +TR RK 
Sbjct:  340 GKRGASYQIIKNKGLKAHKSKLNRNPRVKKRLQYRKAVIRRKGQVRDVRVGEAGKYGGETTGIKSNLTRSRKI 412
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BLAST of jgi.p|Trimin1|163062 vs. uniprot
Match: A0A6H5KFL1_9PHAE (Sas10 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFL1_9PHAE)

HSP 1 Score: 107 bits (268), Expect = 1.490e-25
Identity = 55/72 (76.39%), Postives = 60/72 (83.33%), Query Frame = 1 
Query:    7 KRAASYEIIKNRGLTPHKSKLNRNPRVKKREAYRKAVIRRKGQVREVRTNEAGRYAGEGTGIRSTVTRGRKF 222
            KR ASY IIKNRGLTPHK+KLNRNPR KKREA+RKA IRRKGQVR++RT EA  Y GE TGI+S VTR RK 
Sbjct:  599 KRGASYTIIKNRGLTPHKNKLNRNPRSKKREAFRKATIRRKGQVRDIRTGEADAYGGESTGIKSNVTRSRKL 670
[Close]
BLAST of jgi.p|Trimin1|163062 vs. uniprot
Match: D8LBR3_ECTSI (Sas10 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBR3_ECTSI)

HSP 1 Score: 107 bits (268), Expect = 1.530e-25
Identity = 55/72 (76.39%), Postives = 60/72 (83.33%), Query Frame = 1 
Query:    7 KRAASYEIIKNRGLTPHKSKLNRNPRVKKREAYRKAVIRRKGQVREVRTNEAGRYAGEGTGIRSTVTRGRKF 222
            KR ASY IIKNRGLTPHK+KLNRNPR KKREA+RKA IRRKGQVR++RT EA  Y GE TGI+S VTR RK 
Sbjct:  712 KRGASYTIIKNRGLTPHKNKLNRNPRSKKREAFRKATIRRKGQVRDIRTGEADAYGGESTGIKSNVTRSRKL 783
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BLAST of jgi.p|Trimin1|163062 vs. uniprot
Match: D0NC02_PHYIT (Sas10 domain-containing protein n=11 Tax=Phytophthora TaxID=4783 RepID=D0NC02_PHYIT)

HSP 1 Score: 107 bits (266), Expect = 1.880e-25
Identity = 54/74 (72.97%), Postives = 62/74 (83.78%), Query Frame = 1 
Query:    1 GGKRAASYEIIKNRGLTPHKSKLNRNPRVKKREAYRKAVIRRKGQVREVRTNEAGRYAGEGTGIRSTVTRGRKF 222
            GGKR ASY+I+KN+GL  HKSKLNRNPRVKKR  YRKAVIRRKGQVR+VR  EAG+Y GE TGI+S ++R RK 
Sbjct:  426 GGKRGASYQIMKNKGLKAHKSKLNRNPRVKKRLQYRKAVIRRKGQVRDVRVGEAGKYGGESTGIKSNLSRSRKI 499
[Close]
BLAST of jgi.p|Trimin1|163062 vs. uniprot
Match: A0A7R9U4P2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U4P2_9STRA)

HSP 1 Score: 99.4 bits (246), Expect = 4.590e-25
Identity = 50/74 (67.57%), Postives = 60/74 (81.08%), Query Frame = 1 
Query:    1 GGKRAASYEIIKNRGLTPHKSKLNRNPRVKKREAYRKAVIRRKGQVREVRTNEAGRYAGEGTGIRSTVTRGRKF 222
            G KR A+Y+IIKNRGLTPHKSK+NRNPRVKKRE YR+A++RRKGQVR VR  EA  Y GE +GI + V+R R+ 
Sbjct:   63 GEKRGATYQIIKNRGLTPHKSKMNRNPRVKKREQYRRALLRRKGQVRAVREGEADDYGGEKSGINARVSRSRRL 136
[Close]
BLAST of jgi.p|Trimin1|163062 vs. uniprot
Match: A0A6A5A316_9STRA (Sas10 domain-containing protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5A316_9STRA)

HSP 1 Score: 100 bits (250), Expect = 8.420e-25
Identity = 50/72 (69.44%), Postives = 60/72 (83.33%), Query Frame = 1 
Query:    7 KRAASYEIIKNRGLTPHKSKLNRNPRVKKREAYRKAVIRRKGQVREVRTNEAGRYAGEGTGIRSTVTRGRKF 222
            KR A+Y++IKN+GL  HKSK+NRNPRVKKR  Y+KA++RRKGQVREVRT EA RY GE TGI+S +TR RK 
Sbjct:  145 KRGATYQMIKNKGLKAHKSKINRNPRVKKRLQYKKALVRRKGQVREVRTGEAARYGGEMTGIKSNITRSRKL 216
[Close]
BLAST of jgi.p|Trimin1|163062 vs. uniprot
Match: A0A3M6VII6_9STRA (Sas10 domain-containing protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VII6_9STRA)

HSP 1 Score: 105 bits (261), Expect = 9.740e-25
Identity = 53/73 (72.60%), Postives = 61/73 (83.56%), Query Frame = 1 
Query:    4 GKRAASYEIIKNRGLTPHKSKLNRNPRVKKREAYRKAVIRRKGQVREVRTNEAGRYAGEGTGIRSTVTRGRKF 222
            GKR ASY+I+KN+GL  HKSKLNRNPRVKKR  YRKA+IRRKGQVR+VR  EAG+Y GE TGI+S +TR RK 
Sbjct:  436 GKRGASYQIMKNKGLKAHKSKLNRNPRVKKRLQYRKAIIRRKGQVRDVRVGEAGKYGGETTGIKSNLTRSRKI 508
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|163062 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z4Q7_9STRA2.030e-44100.00Sas10 C-terminal domain-containing protein n=1 Tax... [more]
A0A8K1FNF9_PYTOL2.040e-2675.68Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A662YAX8_9STRA7.910e-2674.32Sas10 domain-containing protein n=2 Tax=Nothophyto... [more]
A0A3R7JAC9_9STRA1.340e-2575.34Sas10 domain-containing protein n=3 Tax=Phytophtho... [more]
A0A6H5KFL1_9PHAE1.490e-2576.39Sas10 domain-containing protein n=1 Tax=Ectocarpus... [more]
D8LBR3_ECTSI1.530e-2576.39Sas10 domain-containing protein n=1 Tax=Ectocarpus... [more]
D0NC02_PHYIT1.880e-2572.97Sas10 domain-containing protein n=11 Tax=Phytophth... [more]
A0A7R9U4P2_9STRA4.590e-2567.57Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
A0A6A5A316_9STRA8.420e-2569.44Sas10 domain-containing protein (Fragment) n=1 Tax... [more]
A0A3M6VII6_9STRA9.740e-2572.60Sas10 domain-containing protein n=1 Tax=Peronospor... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_23contigContig_23:1140512..1141699 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|163062|e_gw1.23.172.1
BRITEko00000,ko03009
KEGG koko:K14765,ko:K14767
GOsGO:0000447,GO:0000460,GO:0000462,GO:0000466,GO:0000469,GO:0000472,GO:0000478,GO:0000479,GO:0000480,GO:0000966,GO:0000967,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0007275,GO:0007399,GO:0007417,GO:0007420,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0022613,GO:0030490,GO:0030515,GO:0030684,GO:0031974,GO:0031981,GO:0032040,GO:0032501,GO:0032502,GO:0032991,GO:0034470,GO:0034471,GO:0034641,GO:0034660,GO:0042254,GO:0042274,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0048513,GO:0048731,GO:0048856,GO:0060322,GO:0070013,GO:0071704,GO:0071840,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0097159,GO:1901360,GO:1901363,GO:1990904
Preferred nameUTP3
Descriptionmaturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
COG categoryS
Max annot lvl2759|Eukaryota
EggNOG OGsKOG3118@1|root,KOG3118@2759|Eukaryota
Evalue2.51e-26
Seed ortholog2880.D8LBR3
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionSas10 C-terminal domain
Ec32 orthologEc-27_003010.1
TranscriptId163384
TrackFilteredModels1
ProteinId163062
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|163062gene_4987Tribonema minus UTEX_B_3156 geneContig_23 1140512..1141699 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_4987_1exon_4987_1Tribonema minus UTEX_B_3156 exonContig_23 1140512..1140655 +
exon_4987_2exon_4987_2Tribonema minus UTEX_B_3156 exonContig_23 1141613..1141699 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_4987CDS_4987Tribonema minus UTEX_B_3156 CDSContig_23 1140512..1140655 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|163062Trimin1|163062|e_gw1.23.172.1Tribonema minus UTEX_B_3156 polypeptideContig_23 1140512..1141699 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_4987 ID=mRNA_4987|Name=jgi.p|Trimin1|163062|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=231bp|location=Sequence derived from alignment at Contig_23:1140512..1141699+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GGCGGCAAGCGCGCAGCGTCCTACGAGATCATCAAGAACCGGGGTCTCAC
GCCGCACAAGTCCAAGCTCAACCGTAACCCGCGCGTCAAGAAGCGCGAGG
CGTACCGCAAGGCGGTCATCCGCCGCAAGGGCCAAGTCCGCGAGGTGCGC
ACCAACGAGGCGGGGCGCTACGCAGGCGAAGGCACCGGCATTAGGTCCAC
CGTCACAAGAGGCCGCAAATTCGCCAGCTGA
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protein sequence of jgi.p|Trimin1|163062

>Trimin1|163062|e_gw1.23.172.1 ID=Trimin1|163062|e_gw1.23.172.1|Name=jgi.p|Trimin1|163062|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=77bp
GGKRAASYEIIKNRGLTPHKSKLNRNPRVKKREAYRKAVIRRKGQVREVR
TNEAGRYAGEGTGIRSTVTRGRKFAS*
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mRNA from alignment at Contig_23:1140512..1141699+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4987 ID=mRNA_4987|Name=jgi.p|Trimin1|163062|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1188bp|location=Sequence derived from alignment at Contig_23:1140512..1141699+ (Tribonema minus UTEX_B_3156 )
GGCGGCAAGCGCGCAGCGTCCTACGAGATCATCAAGAACCGGGGTCTCAC
GCCGCACAAGTCCAAGCTCAACCGTAACCCGCGCGTCAAGAAGCGCGAGG
CGTACCGCAAGGCGGTCATCCGCCGCAAGGGCCAAGTCCGCGAGGTACGC
GCGTGTGTTCGCTATGTACACACGTGTGTATGCTATTTCTACATGTGTAT
GCTTTGAAGTATGCTATGTGTGCGCGATGCATGTGCGTCGAGAAGCGCGG
GGCGTACCGCAAGGCAGTCATCCGCGGCAAGGGCCAAGTCCGCGAGGTAT
GCATGTATACTCTATGTGCACGCATGTATATAGGTGCTATTGGCGCACAT
GCATGTGCTTTTTATTTGTGTACGCCATCAGTATACAATGTATGTATTTC
CTCCAGGAGTACGCATATGCTGTCTACATACCGGTACATGTGCTTATTTG
CCAGGGATAGGTATGCACATGCAAGGGCCCAGTCCGCGAGGCTAGCCTGC
CCGAACGCCTCAATATGGCACCGCAAGGCCGGCGTCACAAGGCGGAGCTG
CGCGAGGCGCGTGGCGGCTGAGTTTACGAAGTAGGTAGCTATTCACTACA
TGGCTGGCTGACCCTCTGCACAGCCATCAACTCTTCGACTCGAATGCTAT
GGGCCAAGTTCGTGACCTTTACACACACATGCGTGTGTGGGTGCGTGTGT
GCGCGCGTGTGTGCGCGCGCGTGTGCGCGCGCGCGCGTAAAATCTGCATC
TCTGTGATTTAAACCCTGCATCTCTGTGATTCAAACCCTGGATACTCAAA
TTGTTGGAGCGACTTTGAGAGCTCGACAATAATGGCAGCGGCGATGGCCG
TGACAGGAACCCTACTTGGCCTAACCCTAACCCTTGGCCCGACCCTAACC
CTTGTGTGTGTGTGCACGCGCGCGCGTGTAATACTGAGCACTGCTCAGTC
CGCGAGGCAGATATTTACAGCAGAAGCACATACCTCTATCATAACATATA
TGATGCTCAGCGCTCACCATCGTATGCTTGGCATACGCGATGCCAACTTC
GCTTTTGCACCGTCACTCACCCCCCCCCTTCCCTCCTAACCCTAACCCTA
GGTGCGCACCAACGAGGCGGGGCGCTACGCAGGCGAAGGCACCGGCATTA
GGTCCACCGTCACAAGAGGCCGCAAATTCGCCAGCTGA
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Coding sequence (CDS) from alignment at Contig_23:1140512..1141699+

>mRNA_4987 ID=mRNA_4987|Name=jgi.p|Trimin1|163062|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=231bp|location=Sequence derived from alignment at Contig_23:1140512..1141699+ (Tribonema minus UTEX_B_3156 )
GGCGGCAAGCGCGCAGCGTCCTACGAGATCATCAAGAACCGGGGTCTCAC
GCCGCACAAGTCCAAGCTCAACCGTAACCCGCGCGTCAAGAAGCGCGAGG
CGTACCGCAAGGCGGTCATCCGCCGCAAGGGCCAAGTCCGCGAGGTGCGC
ACCAACGAGGCGGGGCGCTACGCAGGCGAAGGCACCGGCATTAGGTCCAC
CGTCACAAGAGGCCGCAAATTCGCCAGCTGA
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