mRNA_4986 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|140157 vs. uniprot
Match: A0A835Z7V6_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7V6_9STRA) HSP 1 Score: 419 bits (1077), Expect = 4.210e-148 Identity = 214/214 (100.00%), Postives = 214/214 (100.00%), Query Frame = 1 Query: 1 MSQTGLPPNLAAYNVALHACRSSEAVQQADRILASMAAASVAPNGRTFAGLLRACKMAKDWRRAVNVFFDMEAKHPEFANVYMWSRLVQVLYACAAPESTLDAAALMAELGVTPTTATYNMVLWAHARLGDGDAIESVLSSMRAAGEEVTFLSLAALTRGYAHGWHWDAAEEALEALFNSGSPIGVRMDSVTVFVKACDHAGDLPRIVRWLRRL 642 MSQTGLPPNLAAYNVALHACRSSEAVQQADRILASMAAASVAPNGRTFAGLLRACKMAKDWRRAVNVFFDMEAKHPEFANVYMWSRLVQVLYACAAPESTLDAAALMAELGVTPTTATYNMVLWAHARLGDGDAIESVLSSMRAAGEEVTFLSLAALTRGYAHGWHWDAAEEALEALFNSGSPIGVRMDSVTVFVKACDHAGDLPRIVRWLRRL Sbjct: 1 MSQTGLPPNLAAYNVALHACRSSEAVQQADRILASMAAASVAPNGRTFAGLLRACKMAKDWRRAVNVFFDMEAKHPEFANVYMWSRLVQVLYACAAPESTLDAAALMAELGVTPTTATYNMVLWAHARLGDGDAIESVLSSMRAAGEEVTFLSLAALTRGYAHGWHWDAAEEALEALFNSGSPIGVRMDSVTVFVKACDHAGDLPRIVRWLRRL 214
BLAST of jgi.p|Trimin1|140157 vs. uniprot
Match: A0A835Z0W7_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0W7_9STRA) HSP 1 Score: 271 bits (692), Expect = 1.610e-89 Identity = 142/210 (67.62%), Postives = 171/210 (81.43%), Query Frame = 1 Query: 13 GLPPNLAAYNVALHACRSSEAVQQADRILASMAAASVAPNGRTFAGLLRACKMAKDWRRAVNVFFDMEAKHPEFANVYMWSRLVQVLYACAAPESTLDAAALMAELGVTPTTATYNMVLWAHARLGDGDAIESVLSSMRAAGEEVTFLSLAALTRGYAHGWHWDAAEEALEALFNSGSPIGVRMDSVTVFVKACDHAGDLPRIVRWLRRL 642 GLPP++ ++N+AL+A S A+Q ADRILASMAAA VAP+ +TF G+L+AC A+DW RA++VFFDMEA HPEFA+ MW+RL++V+YACAAPESTL+ AALMAELGV P TATY +L A+ARLGDGDAIESVL SMRAAGE+VT ++A L GYA+G H AAEEALEA+ NSG PI R+ +VT FV AC AGDLPRIVRWLRRL Sbjct: 1 GLPPDVKSHNLALYAWCSDGAMQNADRILASMAAAGVAPDRQTFEGVLQACWYARDWHRAIDVFFDMEANHPEFADAQMWNRLLKVVYACAAPESTLEVAALMAELGVVPITATYTFILQAYARLGDGDAIESVLLSMRAAGEQVTPKTMAVLANGYANGRHMVAAEEALEAVLNSGIPINQRVRTVTAFVHACSRAGDLPRIVRWLRRL 210
BLAST of jgi.p|Trimin1|140157 vs. uniprot
Match: A0A835Z0G4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0G4_9STRA) HSP 1 Score: 261 bits (666), Expect = 7.240e-79 Identity = 132/188 (70.21%), Postives = 156/188 (82.98%), Query Frame = 1 Query: 79 QQADRILASMAAASVAPNGRTFAGLLRACKMAKDWRRAVNVFFDMEAKHPEFANVYMWSRLVQVLYACAAPESTLDAAALMAELGVTPTTATYNMVLWAHARLGDGDAIESVLSSMRAAGEEVTFLSLAALTRGYAHGWHWDAAEEALEALFNSGSPIGVRMDSVTVFVKACDHAGDLPRIVRWLRRL 642 + ADRILASMAAA VAP+ TF G+LRAC++A+DWRRA++VFF+MEA HPEFA+V MW+RL++V+YACAAPESTL+ AALMAE GV P TATYN VL AHA GD A++SVLSSMRA GE+VTF +LA L +GYAHG HWDAAEEALEA+ NS P VR+++VT FV AC A DLPRIVRWLRRL Sbjct: 19 KNADRILASMAAAGVAPDRHTFVGVLRACRLAQDWRRAIDVFFNMEANHPEFADVQMWNRLLKVVYACAAPESTLEVAALMAERGVVPITATYNAVLGAHAMRGDSVAVQSVLSSMRAVGEQVTFATLATLAKGYAHGGHWDAAEEALEAVLNSDRPTPVRVNAVTAFVHACGRARDLPRIVRWLRRL 206
BLAST of jgi.p|Trimin1|140157 vs. uniprot
Match: A0A835Z021_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z021_9STRA) HSP 1 Score: 236 bits (601), Expect = 5.810e-76 Identity = 118/179 (65.92%), Postives = 142/179 (79.33%), Query Frame = 1 Query: 106 MAAASVAPNGRTFAGLLRACKMAKDWRRAVNVFFDMEAKHPEFANVYMWSRLVQVLYACAAPESTLDAAALMAELGVTPTTATYNMVLWAHARLGDGDAIESVLSSMRAAGEEVTFLSLAALTRGYAHGWHWDAAEEALEALFNSGSPIGVRMDSVTVFVKACDHAGDLPRIVRWLRRL 642 MAAA +AP+GRTFAG+L+ C+ A+DWRRA+ VFFDMEAKHPEFA+ + W+RL+QVLY AP+STL AAALMA+ GV P TATYN VLWAHA GD AI+ VL+SMRAAGEEVT +LA +GY +G HW AAE+ALEA+ NS S I +R+ + T FV AC AGDLPRIVRWL+RL Sbjct: 1 MAAAGIAPDGRTFAGVLQTCRHARDWRRAIYVFFDMEAKHPEFADAHTWNRLLQVLYVHPAPDSTLAAAALMAQRGVVPITATYNTVLWAHAMRGDSAAIKKVLTSMRAAGEEVTLTTLAMCAKGYGYGRHWGAAEDALEAVLNSDSTITMRVQTATAFVHACSRAGDLPRIVRWLQRL 179
BLAST of jgi.p|Trimin1|140157 vs. uniprot
Match: A0A835Z7U6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7U6_9STRA) HSP 1 Score: 256 bits (655), Expect = 2.800e-75 Identity = 140/214 (65.42%), Postives = 165/214 (77.10%), Query Frame = 1 Query: 1 MSQTGLPPNLAAYNVALHACRSSEAVQQADRILASMAAASVAPNGRTFAGLLRACKMAKDWRRAVNVFFDMEAKHPEFANVYMWSRLVQVLYACAAPESTLDAAALMAELGVTPTTATYNMVLWAHARLGDGDAIESVLSSMRAAGEEVTFLSLAALTRGYAHGWHWDAAEEALEALFNSGSPIGVRMDSVTVFVKACDHAGDLPRIVRWLRRL 642 MS++ LP ++ Y++AL CRSS+AVQQADRILASMAAA VA +G TFAG LR CK+A+DWRRA+NVF D+EA HP F +V MW+RL+Q L A P+S L AAA MAE GV PT T ++L AHA LGD A+E VLSSMR AGEEVTFLSLA L +GYA G HW+AAEEALEALFN SP +RM +VT F+ +C AGDLPRIVRWLRRL Sbjct: 36 MSRSCLPLDITTYSLALRGCRSSDAVQQADRILASMAAARVALDGGTFAGALRTCKVAQDWRRAINVFRDIEANHPAFVDVNMWNRLLQALCASEVPQSALAAAAQMAERGVAPTRETRLVLLKAHATLGDTAAVERVLSSMRVAGEEVTFLSLAVLAKGYACGGHWEAAEEALEALFNIYSPDQLRMQTVTNFLSSCCRAGDLPRIVRWLRRL 249
BLAST of jgi.p|Trimin1|140157 vs. uniprot
Match: A0A835Z2Y9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2Y9_9STRA) HSP 1 Score: 208 bits (530), Expect = 3.190e-61 Identity = 119/214 (55.61%), Postives = 140/214 (65.42%), Query Frame = 1 Query: 1 MSQTGLPPNLAAYNVALHACRSSEAVQQADRILASMAAASVAPNGRTFAGLLRACKMAKDWRRAVNVFFDMEAKHPEFANVYMWSRLVQVLYACAAPESTLDAAALMAELGVTPTTATYNMVLWAHARLGDGDAIESVLSSMRAAGEEVTFLSLAALTRGYAHGWHWDAAEEALEALFNSGSPIGVRMDSVTVFVKACDHAGDLPRIVRWLRRL 642 MSQ G+P YN+AL ACR S AV QADRIL + A+DWRRA++VFF MEA P FA+VY W+RL++VL AC+AP STL AAALMAE GV P TY ++L A+A LGDG AIESVLS MRAAGEEVT +LA L GYA+ AAE ALEA N + RM++VT F+ AC AGDLPR+VRWLRRL Sbjct: 211 MSQAGVPAISTTYNLALRACRDSAAVHQADRILXXXXXXXXXXXXXXXXXXXXXXRYAQDWRRAIDVFFAMEANLPAFADVYTWNRLLRVLSACSAPRSTLAAAALMAERGVAPIALTYMLILQAYAMLGDGAAIESVLSIMRAAGEEVTPKTLAVLANGYANSGRMVAAEGALEAALNCDCHVSARMEAVTFFMNACGRAGDLPRVVRWLRRL 424
BLAST of jgi.p|Trimin1|140157 vs. uniprot
Match: A0A835ZHN3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZHN3_9STRA) HSP 1 Score: 201 bits (511), Expect = 8.290e-58 Identity = 101/157 (64.33%), Postives = 124/157 (78.98%), Query Frame = 1 Query: 172 AKDWRRAVNVFFDMEAKHPEFANVYMWSRLVQVLYACAAPESTLDAAALMAELGVTPTTATYNMVLWAHARLGDGDAIESVLSSMRAAGEEVTFLSLAALTRGYAHGWHWDAAEEALEALFNSGSPIGVRMDSVTVFVKACDHAGDLPRIVRWLRRL 642 ++DWRRA+ VF DMEA HPEFA+V+MW+RL+QVL C P +TL AA MAE G PTTATY ++L AHA LGDG A+ESVLSSM AAGE+VTF + AAL +GY +G H +AAEEALEA+ +S S + VR D+VT+F+ AC AGDLPRIVRWL+RL Sbjct: 142 SRDWRRALEVFRDMEANHPEFADVHMWNRLLQVLVVCTVPRTTLKVAADMAERGFAPTTATYMILLQAHAALGDGAAVESVLSSMHAAGEDVTFAARAALAKGYVYGGHMEAAEEALEAVLSSDSAVNVRTDAVTLFMNACGSAGDLPRIVRWLQRL 298
BLAST of jgi.p|Trimin1|140157 vs. uniprot
Match: A0A835ZAQ1_9STRA (PPR_long domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAQ1_9STRA) HSP 1 Score: 178 bits (451), Expect = 7.190e-54 Identity = 96/142 (67.61%), Postives = 113/142 (79.58%), Query Frame = 1 Query: 1 MSQTGLPPNLAAYNVALHACRSSEAVQQADRILASMAAASVAPNGRTFAGLLRACKMAKDWRRAVNVFFDMEAKHPEFANVYMWSRLVQVLYACAAPESTLDAAALMAELGVTPTTATYNMVLWAHARLGDGDAIESVLSSM 426 MSQ G+P NL YN+A +ACR+SEAVQQADRILAS+AAA VAPN RTFA +LRAC+ ++DWRRA++VF DMEA HP F + MW+ L++VL A A ESTLDAAA MAE G PTT TY ++L AHA LGDG AIESVLSSM Sbjct: 1 MSQAGVPANLTTYNLAFNACRNSEAVQQADRILASIAAAGVAPNRRTFARVLRACRYSRDWRRAIDVFRDMEANHPVFVDAGMWNCLLEVLSAYPAAESTLDAAAQMAESGFAPTTTTYMVLLQAHATLGDGAAIESVLSSM 142
BLAST of jgi.p|Trimin1|140157 vs. uniprot
Match: A0A835ZBY4_9STRA (PPR_long domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBY4_9STRA) HSP 1 Score: 169 bits (427), Expect = 6.250e-50 Identity = 97/164 (59.15%), Postives = 111/164 (67.68%), Query Frame = 1 Query: 1 MSQTGLPPNLAAYNVALHACRSSEAVQQADRILASMAAASVAPNGRTFAGLLRACKMAKDWRRAVNVFFDMEAKHPEFANVYMWSRLVQVLYACAAPESTLDAAALMAELGVTPTTATYNMVLWAHARLGDGDAIESVLSSMRAAGEEVTFLSLAALTRGYAHG 492 MSQ G+P NL YN+AL ACR+SEAVQQADRILASMAAA +DWRRA++VF DMEA H F + MW+ L++VL AC AP+STLDAAA MAE G PTT TY + AHA LGDG AIESVLSSM AAG+EV +L L GYAHG Sbjct: 1 MSQVGVPTNLTTYNLALKACRNSEAVQQADRILASMAAAGXXXXXXXXXXXXXXXXXXRDWRRAIDVFRDMEANHLAFVDAGMWNCLLEVLSACTAPQSTLDAAAQMAERGFAPTTTTYMALFQAHATLGDGAAIESVLSSMHAAGKEVMPKTLVVLAIGYAHG 164
BLAST of jgi.p|Trimin1|140157 vs. uniprot
Match: A0A835Z225_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z225_9STRA) HSP 1 Score: 160 bits (406), Expect = 1.150e-42 Identity = 98/218 (44.95%), Postives = 121/218 (55.50%), Query Frame = 1 Query: 1 MSQTGLPPNLAAYNVALHACRSSEAVQQADRILASMAAASVAPNGRTFAGLLRACKMAKDWRRAVNVFFDMEAKHPEFANVYMWSRLVQVLYACAAPESTLDAAALMAELGVTPTTATYNMVLWAHARLGDGDAIESVLSSMRAAGEEVTFLSLAALTRGYAHGWHWDAAEEALEALFNSGSP----IGVRMDSVTVFVKACDHAGDLPRIVRWLRRL 642 M Q+G PP+L AYN+ALH C S AV AD+ILA MAA +APN TF G+LRACK A+D RA+ VF +EA +P + MW L+ L C P++ L AAA MAE G+ PT A Y ++ AHA LGDG A E+ LSSMR +ALEA F S S M ++ F+ AC A DLPR +RWLRRL Sbjct: 163 MEQSGTPPDLTAYNLALHTCCGSSAVLHADKILADMAAMGLAPNRHTFRGMLRACKQAQDCERALAVFRSVEAHYPVDVDADMWICLLDALSVCRQPQAVLTAAARMAERGLLPTAAIYVVIAKAHAELGDGAAAETALSSMRXXXXXXXXXXXXXXXXXXXXXXXXXXXXQALEAAFRSSSTGAAATTAHMHAILAFMGACRRARDLPRALRWLRRL 380 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|140157 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 17
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_4986 ID=mRNA_4986|Name=jgi.p|Trimin1|140157|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=642bp|location=Sequence derived from alignment at Contig_23:1128571..1129212+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGTCACAGACGGGGTTGCCGCCGAATTTAGCGGCATACAACGTGGCGCTback to top protein sequence of jgi.p|Trimin1|140157 >Trimin1|140157|gw1.23.140.1 ID=Trimin1|140157|gw1.23.140.1|Name=jgi.p|Trimin1|140157|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=214bp MSQTGLPPNLAAYNVALHACRSSEAVQQADRILASMAAASVAPNGRTFAGback to top mRNA from alignment at Contig_23:1128571..1129212+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_4986 ID=mRNA_4986|Name=jgi.p|Trimin1|140157|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=642bp|location=Sequence derived from alignment at Contig_23:1128571..1129212+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_23:1128571..1129212+ >mRNA_4986 ID=mRNA_4986|Name=jgi.p|Trimin1|140157|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=642bp|location=Sequence derived from alignment at Contig_23:1128571..1129212+ (Tribonema minus UTEX_B_3156 )back to top |