mRNA_4981 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|348404
Unique NamemRNA_4981
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|348404 vs. uniprot
Match: A0A835Z2E3_9STRA (Kinase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2E3_9STRA)

HSP 1 Score: 865 bits (2235), Expect = 3.820e-314
Identity = 524/524 (100.00%), Postives = 524/524 (100.00%), Query Frame = 1 
Query:    1 MVLKPPPPTLELACRSTSSEEEDSLSPTKGEFGLFDSQVSGHMPLITSGCGRIGKPAVPQEVAFYEVVLARHPRLRPFAPNYLGCVDMSIADIEAMGAEAVLSCDDDDDDIDASDEAADAASENLWSIDMEGECHRGGDAVPSRRRSLRRXXXXXXXEGEGRGXXXXXXXXXXXDNAELKAKMWAKFLKRYCRELSTRWEGSGARRGLPACARNGAGGTASVCGVAANHAAMAAGSAMGAGDAAAATVRFMMLEDLTFPFRSGRACILDVKLGTRQYRAGATPEKEQRQRLKSRTTTTGQFGLRLNGMRVWHKPSGAYVVRDKYWGRSIQADTLEAAVTEFFHNGETLRADVIPPLLRLLASLASAIEAASSACRFYSSSVLLIYDGASVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVAAAAVGGHEADXXXXXXXXXXVAACERPRVDVRMIDFANSLCTRGGAGXXXXXXXXXLSSSLDSGVDALHPDDGCLLGLTNLMGLLRRIHASAAQLDPSLPPLC 1572
            MVLKPPPPTLELACRSTSSEEEDSLSPTKGEFGLFDSQVSGHMPLITSGCGRIGKPAVPQEVAFYEVVLARHPRLRPFAPNYLGCVDMSIADIEAMGAEAVLSCDDDDDDIDASDEAADAASENLWSIDMEGECHRGGDAVPSRRRSLRRXXXXXXXEGEGRGXXXXXXXXXXXDNAELKAKMWAKFLKRYCRELSTRWEGSGARRGLPACARNGAGGTASVCGVAANHAAMAAGSAMGAGDAAAATVRFMMLEDLTFPFRSGRACILDVKLGTRQYRAGATPEKEQRQRLKSRTTTTGQFGLRLNGMRVWHKPSGAYVVRDKYWGRSIQADTLEAAVTEFFHNGETLRADVIPPLLRLLASLASAIEAASSACRFYSSSVLLIYDGASVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVAAAAVGGHEADXXXXXXXXXXVAACERPRVDVRMIDFANSLCTRGGAGXXXXXXXXXLSSSLDSGVDALHPDDGCLLGLTNLMGLLRRIHASAAQLDPSLPPLC
Sbjct:    1 MVLKPPPPTLELACRSTSSEEEDSLSPTKGEFGLFDSQVSGHMPLITSGCGRIGKPAVPQEVAFYEVVLARHPRLRPFAPNYLGCVDMSIADIEAMGAEAVLSCDDDDDDIDASDEAADAASENLWSIDMEGECHRGGDAVPSRRRSLRRXXXXXXXEGEGRGXXXXXXXXXXXDNAELKAKMWAKFLKRYCRELSTRWEGSGARRGLPACARNGAGGTASVCGVAANHAAMAAGSAMGAGDAAAATVRFMMLEDLTFPFRSGRACILDVKLGTRQYRAGATPEKEQRQRLKSRTTTTGQFGLRLNGMRVWHKPSGAYVVRDKYWGRSIQADTLEAAVTEFFHNGETLRADVIPPLLRLLASLASAIEAASSACRFYSSSVLLIYDGASVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVAAAAVGGHEADXXXXXXXXXXVAACERPRVDVRMIDFANSLCTRGGAGXXXXXXXXXLSSSLDSGVDALHPDDGCLLGLTNLMGLLRRIHASAAQLDPSLPPLC 524
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BLAST of jgi.p|Trimin1|348404 vs. uniprot
Match: A0A7S2XWJ5_9STRA (Kinase (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XWJ5_9STRA)

HSP 1 Score: 126 bits (317), Expect = 3.200e-29
Identity = 100/363 (27.55%), Postives = 147/363 (40.50%), Query Frame = 1 
Query:   43 RSTSSEEEDSLSPTKGEFGLFDSQVSGHMPLITSGCGRIGKPAVPQEVAFYEVVLARHPRLRPFAPNYLGCVDMSIADIEAMGAEAVLSCDDDDDDIDASDEAADAASENLWSIDMEGECHRGGDAVPSRRRSLRRXXXXXXXEGEGRGXXXXXXXXXXXDNAELKAKMWAKFLKRYCRELSTRWEGSGARRGLPACARNGAGGTASVCGVAANHAAMAAGSAMGAGDAAAATVRFMMLEDLTFPFRSGRACILDVKLGTRQYRAGATPEKEQRQRLKSRTTTTGQFGLRLNGMRVWHKPSGAYVVRDKYWGRSIQADTLEAAVTEFFHNGETLRADVIPPLLRLLASLASAIEAASSACRFY 1131
            R+ SS E++     K    LFD+QV G MP I++G G++GKPAV  EV FYE +  R P L  + P +LG  D+   +I ++  +                ++      N  S             VP                                    +++K   KF        ST+        G                                         +F++LEDLT+PFR  + CILD+K+GTRQ+R G    K +RQ  K R TT+   G RL GM+VW     +Y+ RDKYWGRS+ A+++   ++ FF+NG  +R   I  L+  L  +   I    + C+FY
Sbjct:   36 RNISSWEDEKSE--KIRLSLFDNQVGGQMPFISTGSGQVGKPAVLTEVLFYERMKERFPSLTLWVPKFLGSFDIDTKEIFSLHGQL---------------DSCKTPLPNSMSTSF----------VP------------------------------------IQSKRLEKF--------STKQNNLVRNDGK---------------------------------------CKFLLLEDLTYPFRGKKPCILDIKMGTRQHRPGVCRHKARRQTEKCRKTTSSSLGFRLCGMQVWRTDQASYITRDKYWGRSLAAESIREGLSYFFNNGHGVRTRTISALVDRLNEMKRTIV--ETPCQFY 286
[Close]
BLAST of jgi.p|Trimin1|348404 vs. uniprot
Match: A0A0N8K141_SCLFO (Kinase n=1 Tax=Scleropages formosus TaxID=113540 RepID=A0A0N8K141_SCLFO)

HSP 1 Score: 121 bits (304), Expect = 2.830e-26
Identity = 90/267 (33.71%), Postives = 135/267 (50.56%), Query Frame = 1 
Query:  745 RFMMLEDLTFPFRSGRACILDVKLGTRQYRAGATPEKEQRQRLKSRTTTTGQFGLRLNGMRVWHKPSGAYVVRDKYWGRSIQADTLEAAVTEFFHNGETLRADVIPPLLRLLASLASAIEAASSACRFYSSSVLLIYDGASVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVAAAAVGGHEADXXXXXXXXXXVAACERPRVDVRMIDFANSLCTRGGAGXXXXXXXXXLSSSLDSGVDALHPDDGCLLGLTNLMGLLRRIHASAAQ 1545
            +F++LE+LT+  R    C+LD+K+GTRQ+   A+ EK+  Q  K + +T+   G+RL GM+V+H  SG  +  +KY GR +     + A+ +FFHNG  LR +++ P+LR L  + +A+EA  S  RFYSSS+L+IYDG +                  XXXX          AAA GG                    P VDVRMIDFA++ C   G             S +  G D+     G + GL NL+ ++ ++  ++A 
Sbjct:  205 KFILLENLTW--RHTVPCVLDLKMGTRQHGDDASEEKKATQIRKCQQSTSATIGVRLCGMQVYHSASGQLMFMNKYHGRKLTLAGFKEALFQFFHNGRRLRHELLSPVLRRLRDMQAALEACES-YRFYSSSLLIIYDGEATRTRRPRHNGSKEDDLSEXXXXGGAFGFPCSGAAASGGTSITEGS-------------PVVDVRMIDFAHTTCRHYGE-----------DSVVHEGQDS-----GYIFGLQNLITIISQLEENSAD 439
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BLAST of jgi.p|Trimin1|348404 vs. uniprot
Match: A0A6P8PCS0_GEOSA (Kinase n=2 Tax=Gymnophiona TaxID=8445 RepID=A0A6P8PCS0_GEOSA)

HSP 1 Score: 119 bits (298), Expect = 1.220e-25
Identity = 84/263 (31.94%), Postives = 124/263 (47.15%), Query Frame = 1 
Query:  745 RFMMLEDLTFPFRSGRACILDVKLGTRQYRAGATPEKEQRQRLKSRTTTTGQFGLRLNGMRVWHKPSGAYVVRDKYWGRSIQADTLEAAVTEFFHNGETLRADVIPPLLRLLASLASAIEAASSACRFYSSSVLLIYDGASVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVAAAAVGGHEADXXXXXXXXXXVAACERPRVDVRMIDFANSLCTRGGAGXXXXXXXXXLSSSLDSGVDALHPDDGCLLGLTNLMGLLRRIHA 1533
            RF++LE++   F+    CILD+K+GTRQ+   AT EK+ R   K   +T+   G+R+ GM+V+    G ++ +DKY+GR + AD    A+  FFHNG+ L+ D++ P+L  L +L S IE  SS  RFYSSS+L++YDG                                V       H+            +     P+VDVRMIDFA++                      D+      PD G + GL NL+ +L+ I A
Sbjct:  195 RFLLLENVASQFKY--PCILDLKMGTRQHGDDATEEKKARHMKKCAQSTSSSLGVRICGMQVYQADKGHFLCKDKYYGRKLSADGFRQALYHFFHNGKHLQKDLVEPILLQLRALKSVIEGQSS-YRFYSSSLLIVYDGQE-----------------------------QVDHKVTSDHQGCILKNGCTAPHIVN-SFPKVDVRMIDFAHTT----------------YKGLRDNQTTYDGPDQGYIFGLDNLIQILQNIQA 408
[Close]
BLAST of jgi.p|Trimin1|348404 vs. uniprot
Match: E9GF13_DAPPU (Kinase n=5 Tax=Daphnia TaxID=6668 RepID=E9GF13_DAPPU)

HSP 1 Score: 119 bits (298), Expect = 1.250e-25
Identity = 64/138 (46.38%), Postives = 91/138 (65.94%), Query Frame = 1 
Query:  748 FMMLEDLTFPFRSGRACILDVKLGTRQYRAGATPEKEQRQRLKSRTTTTGQFGLRLNGMRVWHKPSGAYVVRDKYWGRSIQADTLEAAVTEFFHNGETLRADVIPPLLRLLASLASAIEAASSACRFYSSSVLLIYDG 1161
            F++LE+LT+  R  R C+LDVK+GTRQY   A   K + Q LK   +T+G  G+RL GM+V+   +  Y+ R+KY+GRS+  D L +++T+FFHNGE LR D+  PLL  L  L + I    S  R ++SS+L+IYDG
Sbjct:  223 FLLLENLTW--RRKRPCVLDVKMGTRQYGDDAPESKRRSQSLKVENSTSGSLGIRLCGMQVFQVTTNKYLCRNKYYGRSLTDDGLRSSLTQFFHNGERLRTDIFLPLLDRLNRLLAVINQLDS-YRLFTSSLLIIYDG 357
[Close]
BLAST of jgi.p|Trimin1|348404 vs. uniprot
Match: A0A1B6D6R4_9HEMI (Kinase n=1 Tax=Clastoptera arizonana TaxID=38151 RepID=A0A1B6D6R4_9HEMI)

HSP 1 Score: 119 bits (297), Expect = 2.050e-25
Identity = 83/287 (28.92%), Postives = 135/287 (47.04%), Query Frame = 1 
Query:  742 VRFMMLEDLTFPFRSGRACILDVKLGTRQYRAGATPEKEQRQRLKSRTTTTGQFGLRLNGMRVWHKPSGAYVVRDKYWGRSIQADTLEAAVTEFFHNGETLRADVIPPLLRLLASLASAIEAASSACRFYSSSVLLIYDGASVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVAAAAVGGHEA--DXXXXXXXXXXVAACER-------------------PRVDVRMIDFANSLCTRGGAGXXXXXXXXXLSSSLDSGVDALHPDDGCLLGLTNLMGLLRRIHASA 1539
            + F++LE+LT+ F     CILD+K+GTRQY    +  K Q + +K  +TT+G+ G+R+ GM+V+   +G ++ R+K++GR++      AA+  F H+G  LR D++PPL+R L  LAS +    S  R Y++S+LL+Y+G  +                              +AA +    +  +            +C+R                   P  DVR+IDFA+S                  +S ++  V  + PD G L GL N++ +LR IH  A
Sbjct:  159 LHFLVLENLTWRFTL--PCILDLKMGTRQYGDNDSLAKRQSKMVKVISTTSGKLGVRIGGMQVYQATTGHFLCRNKFYGRTLSTGGFRAALRLFLHDGARLRIDILPPLIRRLEELASKLTNLESV-RLYTTSLLLLYEGEKLKQRREGRSEIKRERVVETAESESGKVERCSSAARLSDPRSQFEIRKSDECRYRSTSCDRSKTGYERNYKVPLEVMSEEPLTDVRIIDFAHST-----------------NSEMNDSVSHMGPDSGFLFGLDNILNILRDIHKDA 425
[Close]
BLAST of jgi.p|Trimin1|348404 vs. uniprot
Match: A0A8C4QXA7_EPTBU (Kinase n=1 Tax=Eptatretus burgeri TaxID=7764 RepID=A0A8C4QXA7_EPTBU)

HSP 1 Score: 117 bits (293), Expect = 8.990e-25
Identity = 62/141 (43.97%), Postives = 94/141 (66.67%), Query Frame = 1 
Query:  748 FMMLEDLTFPFRSGRACILDVKLGTRQYRAGATPEKEQRQRLKSRTTTTGQFGLRLNGMRVWHKPSGAYVVRDKYWGRSIQADTLEAAVTEFFHNGETLRADVIPPLLRLLASLASAIEAASSACRFYSSSVLLIYDGASV 1170
            F++LE++   F   R C+LD+K+GTRQ+   A+ EK+ RQ  K   +T+ Q G+RL GM+V+   +  ++ ++KY+GRS+  D   A++ +F HNG+ LR D++ P+L  L  L   +EA  S  RFYSSS+L+IYDGASV
Sbjct:  226 FLLLENVVSRF--ARPCVLDLKMGTRQHGDDASEEKKARQMQKCAQSTSAQLGVRLCGMQVYQASTRNFLCQNKYYGRSLSMDGFRASLLQFLHNGQRLRTDLLQPILMQLRRLHKVLEAQPS-YRFYSSSLLIIYDGASV 363
[Close]
BLAST of jgi.p|Trimin1|348404 vs. uniprot
Match: A0A0P7UZR4_SCLFO (Kinase n=1 Tax=Scleropages formosus TaxID=113540 RepID=A0A0P7UZR4_SCLFO)

HSP 1 Score: 117 bits (293), Expect = 9.090e-25
Identity = 92/270 (34.07%), Postives = 129/270 (47.78%), Query Frame = 1 
Query:  745 RFMMLEDLTFPFRSGRACILDVKLGTRQYRAGATPEKEQRQRLKSRTTTTGQFGLRLNGMRVWHKPSGAYVVRDKYWGRSIQADTLEAAVTEFFHNGETLRADVIPPLLRLLASLASAIEAASSACRFYSSSVLLIYDGASVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVAAAAVGGHEADXXXXXXXXXX---VAACERPRVDVRMIDFANSLCTRGGAGXXXXXXXXXLSSSLDSGVDALHPDDGCLLGLTNLMGLLRRIHASAAQ 1545
            +F++LE++   F     CILD+K+GTRQ+   AT EK  RQ  K + TT+   G+R+ GM+V+   +G Y+ R+KY+GR +  +  + AV +F HNG  LR D++ P+L  L SL   IE   S  RFYSSS+L+IY+G                                 AA A    + D             + +   P VDVRMIDFA+S   +G  G            ++  G     PD G +LGL NLM +L  IH    Q
Sbjct:  208 KFLLLENVVRRFVY--PCILDLKMGTRQHGDDATEEKAARQIKKCKQTTSSTLGMRVCGMQVYQMDTGRYLCRNKYYGRGLSIEGFQQAVYQFMHNGVQLRKDLLEPILSKLRSLKVIIEKQIS-YRFYSSSLLIIYEGKEPEIGTWQK-----------------------AAEAPSDTDPDCTLPEVKLTLPPELHSLPPPTVDVRMIDFAHSTF-KGFRG----------DQTVHDG-----PDGGYILGLDNLMKILEDIHEGKEQ 435
[Close]
BLAST of jgi.p|Trimin1|348404 vs. uniprot
Match: UPI001126306F (inositol hexakisphosphate kinase 3 isoform X1 n=2 Tax=Rhinatrema bivittatum TaxID=194408 RepID=UPI001126306F)

HSP 1 Score: 116 bits (291), Expect = 1.050e-24
Identity = 82/261 (31.42%), Postives = 119/261 (45.59%), Query Frame = 1 
Query:  745 RFMMLEDLTFPFRSGRACILDVKLGTRQYRAGATPEKEQRQRLKSRTTTTGQFGLRLNGMRVWHKPSGAYVVRDKYWGRSIQADTLEAAVTEFFHNGETLRADVIPPLLRLLASLASAIEAASSACRFYSSSVLLIYDGASVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVAAAAVGGHEADXXXXXXXXXXVAACERPRVDVRMIDFANSLCTRGGAGXXXXXXXXXLSSSLDSGVDALHPDDGCLLGLTNLMGLLRRI 1527
            RF++LE++   F+    CILD+K+GTRQ+   AT EK  R   K   +T+   G+R+ GM+V+    G ++ +DKY+GR + AD    A+  F HNG+ LR D++ P+L  L +L S IE  +S  RFYSSS+L++YDG                                 A   V                      P+VDVRMIDFA++                      D+  +   PD G + GL NL  +L+ I
Sbjct:  195 RFLLLENVASQFKY--PCILDLKMGTRQHGDDATEEKRARHMKKCAQSTSSSLGVRICGMQVYQADKGHFLCKDKYYGRKLSADGFRQALYHFLHNGKCLRTDLLEPILLQLRTLKSVIEGQNS-YRFYSSSLLIVYDGQEQ------------------------------AEGTVTLDHPGYIQKNGCALPYVVNSHPKVDVRMIDFAHTT----------------YKGCRDNQTNDEGPDQGYIFGLDNLSRILQSI 406
[Close]
BLAST of jgi.p|Trimin1|348404 vs. uniprot
Match: UPI0018A2189C (inositol hexakisphosphate kinase 3 isoform X2 n=1 Tax=Chelonia mydas TaxID=8469 RepID=UPI0018A2189C)

HSP 1 Score: 114 bits (285), Expect = 1.590e-24
Identity = 59/139 (42.45%), Postives = 92/139 (66.19%), Query Frame = 1 
Query:  745 RFMMLEDLTFPFRSGRACILDVKLGTRQYRAGATPEKEQRQRLKSRTTTTGQFGLRLNGMRVWHKPSGAYVVRDKYWGRSIQADTLEAAVTEFFHNGETLRADVIPPLLRLLASLASAIEAASSACRFYSSSVLLIYDG 1161
            +F++LE++   ++    CILD+K+GTRQ+   A+ EK+ R   K   +T+G  GLR+ GM+V+   +G ++ +DKY+GR +  D    A+ +F HNG  LR DV+ P++  L +L S I++ SS  RFYSSS+L+IYDG
Sbjct:  104 QFLLLENVVSKYQY--PCILDLKMGTRQHGDDASEEKKARHIKKCEQSTSGSLGLRICGMQVYRADTGQFLCKDKYYGRKLSPDGFREALCQFLHNGNRLRTDVLEPIVSQLKALLSVIKSQSS-YRFYSSSLLIIYDG 239
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|348404 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z2E3_9STRA3.820e-314100.00Kinase n=1 Tax=Tribonema minus TaxID=303371 RepID=... [more]
A0A7S2XWJ5_9STRA3.200e-2927.55Kinase (Fragment) n=1 Tax=Fibrocapsa japonica TaxI... [more]
A0A0N8K141_SCLFO2.830e-2633.71Kinase n=1 Tax=Scleropages formosus TaxID=113540 R... [more]
A0A6P8PCS0_GEOSA1.220e-2531.94Kinase n=2 Tax=Gymnophiona TaxID=8445 RepID=A0A6P8... [more]
E9GF13_DAPPU1.250e-2546.38Kinase n=5 Tax=Daphnia TaxID=6668 RepID=E9GF13_DAP... [more]
A0A1B6D6R4_9HEMI2.050e-2528.92Kinase n=1 Tax=Clastoptera arizonana TaxID=38151 R... [more]
A0A8C4QXA7_EPTBU8.990e-2543.97Kinase n=1 Tax=Eptatretus burgeri TaxID=7764 RepID... [more]
A0A0P7UZR4_SCLFO9.090e-2534.07Kinase n=1 Tax=Scleropages formosus TaxID=113540 R... [more]
UPI001126306F1.050e-2431.42inositol hexakisphosphate kinase 3 isoform X1 n=2 ... [more]
UPI0018A2189C1.590e-2442.45inositol hexakisphosphate kinase 3 isoform X2 n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_23contigContig_23:1097544..1101760 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|348404|estExt_Genemark1.C_Ctg_230124
BRITEko00000,ko00001,ko01000
KEGG rclassRC00002
KEGG ReactionR09087,R10548
KEGG Pathwayko04070,ko04138,map04070,map04138
KEGG koko:K07756
EC2.7.4.21
Descriptioninositol phosphate biosynthetic process
COG categoryG
Max annot lvl2759|Eukaryota
EggNOG OGsKOG1620@1|root,KOG1620@2759|Eukaryota
Evalue7.96e-29
Seed ortholog112098.XP_008607566.1
Hectar predicted targeting categoryother localisation
TranscriptId348726
TrackFilteredModels1
ProteinId348404
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|348404gene_4981Tribonema minus UTEX_B_3156 geneContig_23 1097544..1101760 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|348404Trimin1|348404|estExt_Genemark1.C_Ctg_230124Tribonema minus UTEX_B_3156 polypeptideContig_23 1097544..1101760 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_4981_5exon_4981_5Tribonema minus UTEX_B_3156 exonContig_23 1097544..1098128 -
exon_4981_4exon_4981_4Tribonema minus UTEX_B_3156 exonContig_23 1098596..1098848 -
exon_4981_3exon_4981_3Tribonema minus UTEX_B_3156 exonContig_23 1099910..1100028 -
exon_4981_2exon_4981_2Tribonema minus UTEX_B_3156 exonContig_23 1100186..1100620 -
exon_4981_1exon_4981_1Tribonema minus UTEX_B_3156 exonContig_23 1101578..1101760 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_4981CDS_4981Tribonema minus UTEX_B_3156 CDSContig_23 1101578..1101760 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_4981 ID=mRNA_4981|Name=jgi.p|Trimin1|348404|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1575bp|location=Sequence derived from alignment at Contig_23:1097544..1101760- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGCTGAAACCACCGCCACCGACTCTGGAGCTGGCCTGTCGCAGTAC
GAGCAGTGAGGAAGAGGATTCCCTGTCCCCCACCAAAGGGGAGTTCGGCT
TGTTTGACAGCCAGGTGTCGGGGCACATGCCGCTCATCACCAGCGGCTGT
GGCAGAATAGGCAAGCCTGCCGTGCCTCAAGAGGTGGCGTTCTACGAGGT
CGTCCTCGCGCGCCACCCGCGCCTGCGCCCGTTCGCGCCCAACTACCTCG
GCTGCGTCGACATGTCCATTGCGGACATTGAGGCCATGGGCGCGGAGGCA
GTGCTCAGTTGCGACGACGACGACGACGACATAGACGCTAGCGACGAGGC
TGCCGACGCTGCGTCCGAAAACCTCTGGAGCATTGATATGGAGGGGGAGT
GTCACAGGGGGGGCGACGCCGTGCCGTCGCGGCGTAGGAGCCTGCGGCGG
CGGCGGCAACAAGGGGGGGGCGAGGGGGAGGGGCGCGGGGGAAGGGGGGG
GAAGGGGGGCGGCGGGGGGGGGGACAACGCGGAGCTCAAGGCCAAGATGT
GGGCCAAGTTCCTGAAGCGGTACTGCCGCGAACTCAGCACGCGGTGGGAG
GGGAGCGGCGCCAGGCGAGGCTTGCCCGCGTGTGCCCGCAACGGTGCTGG
TGGCACGGCATCAGTGTGCGGGGTGGCGGCGAACCACGCGGCCATGGCTG
CCGGGAGCGCCATGGGCGCAGGCGACGCCGCGGCGGCCACCGTGCGCTTC
ATGATGCTGGAGGACCTGACGTTCCCCTTCCGCAGCGGGCGCGCGTGCAT
ACTTGACGTTAAGCTTGGCACGCGCCAATACCGCGCCGGCGCCACACCTG
AGAAGGAGCAGCGGCAGCGCCTAAAGTCGCGAACCACGACAACGGGGCAG
TTTGGCCTGCGGCTTAACGGCATGCGCGTGTGGCACAAGCCGAGCGGCGC
TTATGTCGTGCGCGACAAATACTGGGGGCGCTCCATTCAGGCGGACACTC
TCGAGGCGGCCGTCACCGAGTTCTTCCACAACGGCGAGACGCTGCGCGCG
GACGTGATACCGCCGCTGCTGCGCCTCCTGGCGTCGCTCGCCTCCGCGAT
AGAGGCCGCGTCCTCGGCGTGCCGCTTCTACTCCTCCAGCGTGCTGCTCA
TCTACGACGGCGCGAGCGTCGCCGCCGCCGCCGCCGCGACGAGCCCATCC
GCCGGCAAAGGCGGCAGCGGCGGCAGCGGCGACGCTGGCGGCGGCGGCGG
CGGCGGCGTTGCGGCGGCAGCTGTTGGCGGGCACGAGGCGGACGGCGGTG
CCGGCGGCGGCGGCGGCAGCGGCGTGGCGGCGTGCGAGCGGCCGCGCGTG
GACGTGCGCATGATAGACTTTGCCAACAGCCTGTGCACGCGCGGCGGCGC
GGGGGGGGGGCGCGGCGGCGGCGGCGGCGCGCTGTCGTCGTCGCTCGACA
GCGGCGTCGACGCGCTGCACCCCGACGACGGCTGCCTGCTCGGGCTGACC
AACCTCATGGGGCTGCTGCGGCGCATCCACGCGTCCGCCGCGCAGCTGGA
CCCGTCGCTGCCGCCGCTGTGCTAG
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protein sequence of jgi.p|Trimin1|348404

>Trimin1|348404|estExt_Genemark1.C_Ctg_230124 ID=Trimin1|348404|estExt_Genemark1.C_Ctg_230124|Name=jgi.p|Trimin1|348404|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=525bp
MVLKPPPPTLELACRSTSSEEEDSLSPTKGEFGLFDSQVSGHMPLITSGC
GRIGKPAVPQEVAFYEVVLARHPRLRPFAPNYLGCVDMSIADIEAMGAEA
VLSCDDDDDDIDASDEAADAASENLWSIDMEGECHRGGDAVPSRRRSLRR
RRQQGGGEGEGRGGRGGKGGGGGGDNAELKAKMWAKFLKRYCRELSTRWE
GSGARRGLPACARNGAGGTASVCGVAANHAAMAAGSAMGAGDAAAATVRF
MMLEDLTFPFRSGRACILDVKLGTRQYRAGATPEKEQRQRLKSRTTTTGQ
FGLRLNGMRVWHKPSGAYVVRDKYWGRSIQADTLEAAVTEFFHNGETLRA
DVIPPLLRLLASLASAIEAASSACRFYSSSVLLIYDGASVAAAAAATSPS
AGKGGSGGSGDAGGGGGGGVAAAAVGGHEADGGAGGGGGSGVAACERPRV
DVRMIDFANSLCTRGGAGGGRGGGGGALSSSLDSGVDALHPDDGCLLGLT
NLMGLLRRIHASAAQLDPSLPPLC*
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mRNA from alignment at Contig_23:1097544..1101760-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4981 ID=mRNA_4981|Name=jgi.p|Trimin1|348404|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=4217bp|location=Sequence derived from alignment at Contig_23:1097544..1101760- (Tribonema minus UTEX_B_3156 )
ATGGTGCTGAAACCACCGCCACCGACTCTGGAGCTGGCCTGTCGCAGTAC
GAGCAGTGAGGAAGAGGATTCCCTGTCCCCCACCAAAGGGGAGTTCGGCT
TGTTTGACAGCCAGGTGTCGGGGCACATGCCGCTCATCACCAGCGGCTGT
GGCAGAATAGGCAAGCCTGCCGTGCCTCAAGAGGTGAGGGCTGCGCCTGT
AAAGTTCATGCTGCTCGGTGTGCGTGCGTGCTCTGGCTGCTGCCGTTATG
TTTTTTTTCTGACATTTGGTTTCGCAACAGAGCTGCCCAGGACTTGCGAC
TGCGCAGTTTGCACGTAATTATCGGAGTTCTCAGGTCCCAGCTACGTTTG
ACATAAGTCATGGCGGTGCTGATGTCCCATGTGTTCCTGCTGGGCTCCGT
CTTGATGTGCCTGCGGAATTACTTTATAGTTCACAAGCACACAGTGCCCT
GTGTGCTGTGTGCGACTGTGCTGGCATCGCCGCCAGCTCATGTTGCAGCA
AACATATTCCCGTACGTAACGTTGCACGCAGTCCCTGCAATTGTTGTTCT
ACATCACGACATTCGTTCGCACATTCGCACATTCGTTTGCAGTGCTGGAT
CATCGACTTCACTCAGATGTCGCGGCTGCACAGCCACTGCGCCCTCATGT
AATCATCAATATTGTTGCTACTTTTCAACTCCCTTGCGGCTCACTGATGG
CCTGTATTGCTCAGGCATTTCGCAGGAGTAATGTCCATCACGCCAGTACA
GGGTAGCACGCTGCACGTCGGCAATTTGTCTTATCAGGTGCCTTGGCCTG
CTGCATCTCTTGCTGGCTGCCAAGCAATCCTTGGCAGATCGCAAGCAGCT
CGCAAGCACCCTGTCCTACATCAAAGGCTGCCGTAGTAGCATGCTCATGC
TTGCATTTGCCGATGGTGACAGTCATGCCCTTCTTGCCTATGTCCCGTCC
ATGCAAAACACAAGGCGGCGCTTCACCAGCCACAACGGCGGCGTCTGATA
TGTACCCCCACACGCCCTCTATGCGCTTCATGCGCCGCAGTCCGTGCATC
GACGAGTTGCCCGTCACCTGCTGACTTGGCAGCCCATACATCCATCCATA
CCTATACATACTCACCCCCCCCCACCTCCCGCCTGGCCAGGTGGCGTTCT
ACGAGGTCGTCCTCGCGCGCCACCCGCGCCTGCGCCCGTTCGCGCCCAAC
TACCTCGGCTGCGTCGACATGTCCATTGCGGACATTGAGGCCATGGGCGC
GGAGGCAGTGCTCAGTTGCGACGACGACGACGACGACATAGACGCTAGCG
ACGAGGCTGCCGACGCTGCGTCCGAAAACCTCTGGAGCATTGATATGGAG
GGGGAGTGTCACAGGGGGGGCGACGCCGTGCCGTCGCGGCGTAGGAGCCT
GCGGCGGCGGCGGCAACAAGGGGGGGGCGAGGGGGAGGGGCGCGGGGGAA
GGGGGGGGAAGGGGGGCGGCGGGGGGGGGGACAACGCGGAGCTCAAGGCC
AAGATGTGGGCCAAGTTCCTGAAGCGGTACTGCCGCGAACTCAGCACGCG
GTGGGAGGGGAGCGGCGCCAGGCGAGTGACTCTCCTCCCTGTATAGCGTC
CCGTTGCTTATTAGCAGTTGTGTCGTGTCTGCTCTGCTGGAGGCCGCTGC
TTGGCCGCGGCTGCGCCGCCGCTCGCTCCGCCGCTGCTGCTCCTCTCCCT
GCATTGTTCTGCTGTCGCTGGTGCACGCCTAGGGCTTGCCCGCGTGTGCC
CGCAACGGTGCTGGTGGCACGGCATCAGTGTGCGGGGTGGCGGCGAACCA
CGCGGCCATGGCTGCCGGGAGCGCCATGGGCGCAGGCGACGCCGCGGCGG
CGTCAAGTACTCAGCGTACGTATCTACGCGCTTGTGCGACGTACTTTGCG
TGCATGACGCGTGTATTGCATGCTGCCGCTGGGTGGCGCTGTCGCGCGAG
CACTGCCGCACATCGCGACTTCACCGTTCCGGACGTACTGCAGGAGGGAT
GCTGAGCCGCTTGGAGGCGGCTGCAGATAGGCATGCGCCTGCTATATCGC
CATTGCGTCTTGCCGACTGACTCTGCGCTATGCTCTGCGTAGCAGTGCAT
GCCTCCATACCTATATGTCGTTGCTGTGCGCCTCGTGCTGTGTTAAATTG
GAGCCACAAGTGAAGCCCTGCGCGGTGGCTGTGTTGCTGGCGTGTGCATC
AGCGTGGATGTCCACTATGATGATCTGTATTGCGTGGTTGCTTGAGATGG
CATTGCAGGCCTGTTTCCTCCGCAGGAGACAGCACACTGGCATCTGCGCA
CTGTCTCTTACCTTGTACGTGTCTCAACGACTGTCTGTATAAGCCATACG
GCAACTGTTGCATAAATTGCAGTTCCTTGGTCACATGCTATTTCTACTTC
GACTGTGCAATTGCATGGCTTGGAGTGCTTTGACAGCACAGCACCAAGTG
TTTCGCCCCTCGCTGCACGCTGCTAGTTGCACTTTCATCGCAGCGCAGCT
CAGCAGTTCAACATTGCCATTTGAGTGCCTCTGGTTGACTGATGTGCACT
GTGCGCATGTGCCCACTGCTGCTGCCCAACCTGTCCTTCACTGCTGTGAC
TGCAGTGCGTGCACGACGGCGGGCCAGTACAACGCCTCTACTTCAACACC
TCATTTCAACTTCCACGCCTCCTCGACTGCATAGCACGCATGAGGATGCT
CTAGAACACTGCATTTCTCATCACTGTCGTGCCACCTCTGATCTCATACG
TTTATGCGACACTGCAACGAGTGTCCAGATTGGCATAGTTAGCTTCGTTG
TCAAATCGAATTTACAACGAAGCTCACTACACCACAGGCCATGTAGGCAT
GTCACTCTTCAACTCTCAACATCTACTGCTCTCCCCCCCTCCCCCGCTCT
CCATCCGCGCAGCACCGTGCGCTTCATGATGCTGGAGGACCTGACGTTCC
CCTTCCGCAGCGGGCGCGCGTGCATACTTGACGTTAAGCTTGGCACGCGC
CAATACCGCGCCGGCGCCACACCTGAGAAGGAGCAGCGGCAGCGCCTAAA
GTCGCGAACCACGACAACGGGGCAGTTTGGCCTGCGGCTTAACGGCATGC
GCGTGTGGCACAAGCCGAGCGGCGCTTATGTCGTGCGCGACAAATACTGG
GGGCGCTCCATTCAGGTGCAGCACGAGTGCATGTGTGCGTGTATCGCATG
CACGTGCATACATGGGCGTGCACGTACACCTACATACTCATCGAGTAGGC
ATGGTTGTGGCGCACGCATACGTATGCATGCATCATATGCCTGTATTTGT
ACATGACATAAGGCACATCGCCCCCCCCCCCCCCCCCGGCCGTCACCTCC
AACGCGGAGCACTGCTGCACATCAAGCCGTGGGCAGATCAACCGCGTCAT
TTTCAGTATCCAGCCACTTGACAACATCTACATCTGTGTTTGGCCTGAAC
GCCGATGCACGTAGTTATACATTGACACGCGCTTCAGGTGCCTCCGCAGC
AGGGTCAGGCACTGGTCGTCGCAGGTGTTCCGGCTCTGACCCGCATTGCG
CGCCGCCGCACACAGCACATCGCCCACCCGCCCACTGTCGTTGTCACCTC
TAACCCTGAGCGCTGCTGCTGCACCTCCACAGGCGGACACTCTCGAGGCG
GCCGTCACCGAGTTCTTCCACAACGGCGAGACGCTGCGCGCGGACGTGAT
ACCGCCGCTGCTGCGCCTCCTGGCGTCGCTCGCCTCCGCGATAGAGGCCG
CGTCCTCGGCGTGCCGCTTCTACTCCTCCAGCGTGCTGCTCATCTACGAC
GGCGCGAGCGTCGCCGCCGCCGCCGCCGCGACGAGCCCATCCGCCGGCAA
AGGCGGCAGCGGCGGCAGCGGCGACGCTGGCGGCGGCGGCGGCGGCGGCG
TTGCGGCGGCAGCTGTTGGCGGGCACGAGGCGGACGGCGGTGCCGGCGGC
GGCGGCGGCAGCGGCGTGGCGGCGTGCGAGCGGCCGCGCGTGGACGTGCG
CATGATAGACTTTGCCAACAGCCTGTGCACGCGCGGCGGCGCGGGGGGGG
GGCGCGGCGGCGGCGGCGGCGCGCTGTCGTCGTCGCTCGACAGCGGCGTC
GACGCGCTGCACCCCGACGACGGCTGCCTGCTCGGGCTGACCAACCTCAT
GGGGCTGCTGCGGCGCATCCACGCGTCCGCCGCGCAGCTGGACCCGTCGC
TGCCGCCGCTGTGCTAG
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Coding sequence (CDS) from alignment at Contig_23:1097544..1101760-

>mRNA_4981 ID=mRNA_4981|Name=jgi.p|Trimin1|348404|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1575bp|location=Sequence derived from alignment at Contig_23:1097544..1101760- (Tribonema minus UTEX_B_3156 )
ATGGTGCTGAAACCACCGCCACCGACTCTGGAGCTGGCCTGTCGCAGTAC
GAGCAGTGAGGAAGAGGATTCCCTGTCCCCCACCAAAGGGGAGTTCGGCT
TGTTTGACAGCCAGGTGTCGGGGCACATGCCGCTCATCACCAGCGGCTGT
GGCAGAATAGGCAAGCCTGCCGTGCCTCAAGAGGTGGCGTTCTACGAGGT
CGTCCTCGCGCGCCACCCGCGCCTGCGCCCGTTCGCGCCCAACTACCTCG
GCTGCGTCGACATGTCCATTGCGGACATTGAGGCCATGGGCGCGGAGGCA
GTGCTCAGTTGCGACGACGACGACGACGACATAGACGCTAGCGACGAGGC
TGCCGACGCTGCGTCCGAAAACCTCTGGAGCATTGATATGGAGGGGGAGT
GTCACAGGGGGGGCGACGCCGTGCCGTCGCGGCGTAGGAGCCTGCGGCGG
CGGCGGCAACAAGGGGGGGGCGAGGGGGAGGGGCGCGGGGGAAGGGGGGG
GAAGGGGGGCGGCGGGGGGGGGGACAACGCGGAGCTCAAGGCCAAGATGT
GGGCCAAGTTCCTGAAGCGGTACTGCCGCGAACTCAGCACGCGGTGGGAG
GGGAGCGGCGCCAGGCGAGGCTTGCCCGCGTGTGCCCGCAACGGTGCTGG
TGGCACGGCATCAGTGTGCGGGGTGGCGGCGAACCACGCGGCCATGGCTG
CCGGGAGCGCCATGGGCGCAGGCGACGCCGCGGCGGCCACCGTGCGCTTC
ATGATGCTGGAGGACCTGACGTTCCCCTTCCGCAGCGGGCGCGCGTGCAT
ACTTGACGTTAAGCTTGGCACGCGCCAATACCGCGCCGGCGCCACACCTG
AGAAGGAGCAGCGGCAGCGCCTAAAGTCGCGAACCACGACAACGGGGCAG
TTTGGCCTGCGGCTTAACGGCATGCGCGTGTGGCACAAGCCGAGCGGCGC
TTATGTCGTGCGCGACAAATACTGGGGGCGCTCCATTCAGGCGGACACTC
TCGAGGCGGCCGTCACCGAGTTCTTCCACAACGGCGAGACGCTGCGCGCG
GACGTGATACCGCCGCTGCTGCGCCTCCTGGCGTCGCTCGCCTCCGCGAT
AGAGGCCGCGTCCTCGGCGTGCCGCTTCTACTCCTCCAGCGTGCTGCTCA
TCTACGACGGCGCGAGCGTCGCCGCCGCCGCCGCCGCGACGAGCCCATCC
GCCGGCAAAGGCGGCAGCGGCGGCAGCGGCGACGCTGGCGGCGGCGGCGG
CGGCGGCGTTGCGGCGGCAGCTGTTGGCGGGCACGAGGCGGACGGCGGTG
CCGGCGGCGGCGGCGGCAGCGGCGTGGCGGCGTGCGAGCGGCCGCGCGTG
GACGTGCGCATGATAGACTTTGCCAACAGCCTGTGCACGCGCGGCGGCGC
GGGGGGGGGGCGCGGCGGCGGCGGCGGCGCGCTGTCGTCGTCGCTCGACA
GCGGCGTCGACGCGCTGCACCCCGACGACGGCTGCCTGCTCGGGCTGACC
AACCTCATGGGGCTGCTGCGGCGCATCCACGCGTCCGCCGCGCAGCTGGA
CCCGTCGCTGCCGCCGCTGTGCTAG
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