mRNA_4959 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|348392
Unique NamemRNA_4959
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|348392 vs. uniprot
Match: A0A835Z3H3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3H3_9STRA)

HSP 1 Score: 249 bits (635), Expect = 4.180e-81
Identity = 177/177 (100.00%), Postives = 177/177 (100.00%), Query Frame = 1 
Query:    1 MQETQDVERDARKKATAAXXXXXXXXXANPKAFAVTRPTAXXXXXXXXXXSPAQPRPWAALRRRSMADVQALPAXXXXXXXXDGTDAAAGAPFVNQGLRRWEAERQRWVQKGXXXXXXXXXXXXXXXXXRKAQTVDTDAIIDTIFVGKGNGVLPRPVMLPQMINLLVDLWETEGLYD 531
            MQETQDVERDARKKATAAXXXXXXXXXANPKAFAVTRPTAXXXXXXXXXXSPAQPRPWAALRRRSMADVQALPAXXXXXXXXDGTDAAAGAPFVNQGLRRWEAERQRWVQKGXXXXXXXXXXXXXXXXXRKAQTVDTDAIIDTIFVGKGNGVLPRPVMLPQMINLLVDLWETEGLYD
Sbjct:    1 MQETQDVERDARKKATAAXXXXXXXXXANPKAFAVTRPTAXXXXXXXXXXSPAQPRPWAALRRRSMADVQALPAXXXXXXXXDGTDAAAGAPFVNQGLRRWEAERQRWVQKGXXXXXXXXXXXXXXXXXRKAQTVDTDAIIDTIFVGKGNGVLPRPVMLPQMINLLVDLWETEGLYD 177
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BLAST of jgi.p|Trimin1|348392 vs. uniprot
Match: D8LBC5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LBC5_ECTSI)

HSP 1 Score: 79.3 bits (194), Expect = 1.270e-15
Identity = 41/86 (47.67%), Postives = 53/86 (61.63%), Query Frame = 1 
Query:  277 FVNQGLRRWEAERQRWVQKGXXXXXXXXXXXXXXXXXRKAQTVDTDAIIDTIFVGKGN-GVLPRPVMLPQMINLLVDLWETEGLYD 531
            FVN+GL RWE ER+ W+  G                  +A+T+D D +ID +F G+G  G LP+ V LPQMI+LLVDLWE EGL+D
Sbjct:   23 FVNRGLLRWERERKAWLAGGTGGPVGRRRA--------RARTMDVDEVIDDLFSGRGGTGNLPQSVPLPQMIDLLVDLWEAEGLFD 100
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BLAST of jgi.p|Trimin1|348392 vs. uniprot
Match: A0A4D9DFS2_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DFS2_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 5.030e-12
Identity = 36/97 (37.11%), Postives = 52/97 (53.61%), Query Frame = 1 
Query:  250 GTDAAAGAPFVNQGLRRWEAERQRWVQKGXXXXXXXXXXXXXXXXX---RKAQTVDTDAIIDTIFVGKGNGVLPRPVMLPQMINLLVDLWETEGLYD 531
            G+  A+   +VN GL+ W   R+ W  K                     ++A++VD D +I++IF   G+  LP+PV L QMI+LLVD WE +GLYD
Sbjct:   39 GSTHASREEYVNSGLKLWSERRREWQSKNNQSEGGGTRSEPPPARSQLPKRARSVDVDHVIESIFSTTGDARLPQPVPLSQMIDLLVDFWEADGLYD 135
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BLAST of jgi.p|Trimin1|348392 vs. uniprot
Match: A0A7S2E517_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2E517_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 2.090e-8
Identity = 38/105 (36.19%), Postives = 48/105 (45.71%), Query Frame = 1 
Query:  277 FVNQGLRRWEAERQRWVQKGXXXXXXXXXXXXXXXXXRKAQTVDTDAIIDTIFV----------------GKG------NGVLPRPVMLPQMINLLVDLWETEGL 525
            FVN GL+RWE ER RW+                    R A  +D D +ID +F                 G+G      +G  P PV LPQM+++LVDLWE EGL
Sbjct:   49 FVNVGLQRWEVERARWLSSASLDETHPTNKSVQQQQ-RHAIELDVDEVIDCVFSNRWRQTAQQLPSGGRGGRGFHQKIDDGSFPCPVPLPQMVDILVDLWEAEGL 152
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BLAST of jgi.p|Trimin1|348392 vs. uniprot
Match: W7U1W8_9STRA (DUF4050 domain-containing protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U1W8_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 6.220e-8
Identity = 26/47 (55.32%), Postives = 36/47 (76.60%), Query Frame = 1 
Query:  391 KAQTVDTDAIIDTIFVGKGNGVLPRPVMLPQMINLLVDLWETEGLYD 531
            +A++VD D +I++IF   G+  LP+PV L QMI+LLVD WE +GLYD
Sbjct:   67 RARSVDVDHVIESIFSTTGDARLPQPVPLSQMIDLLVDFWEADGLYD 113
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BLAST of jgi.p|Trimin1|348392 vs. uniprot
Match: A0A7S1E125_9STRA (Hypothetical protein n=1 Tax=Thalassionema nitzschioides TaxID=33649 RepID=A0A7S1E125_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 3.420e-7
Identity = 32/89 (35.96%), Postives = 41/89 (46.07%), Query Frame = 1 
Query:  277 FVNQGLRRWEAERQRWVQKGXXXXXXXXXXXXXXXXXRKAQTVDTDAIIDTIFVGKGNGV------LPRPVMLPQMINLLVDLWETEGL 525
            FVNQG  +WE  R +W+                      A+ +D D IID IF  +           P  V LPQM+++LVDLWE EGL
Sbjct:   35 FVNQGFLKWEESRNKWISSTQESNSKTKTG---------AKALDVDEIIDLIFSQRWRSQSPERNQFPEAVPLPQMVDILVDLWEAEGL 114
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BLAST of jgi.p|Trimin1|348392 vs. uniprot
Match: A0A7S2XR72_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XR72_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 4.250e-7
Identity = 34/100 (34.00%), Postives = 43/100 (43.00%), Query Frame = 1 
Query:  277 FVNQGLRRWEAERQRWVQKGXXXXXXXXXXXXXXXXXRKAQTVDTDAIIDTIFVGK-----------------GNGVLPRPVMLPQMINLLVDLWETEGL 525
            +VN GL  WE  R+ W++K                  R A  +D D IID IF  +                   G    PV LPQM+++LVDLWE EGL
Sbjct:   26 YVNTGLLHWEKGRKHWLRK-KAGSVGEEDKKEEEGEERAAINIDVDEIIDIIFSNRWRVTSPSNSLPGKTTETARGTFAHPVPLPQMVDILVDLWEAEGL 124
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BLAST of jgi.p|Trimin1|348392 vs. uniprot
Match: A0A7S1D623_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1D623_CYCTE)

HSP 1 Score: 58.5 bits (140), Expect = 4.510e-7
Identity = 33/89 (37.08%), Postives = 44/89 (49.44%), Query Frame = 1 
Query:  277 FVNQGLRRWEAERQRWVQKGXXXXXXXXXXXXXXXXXRKAQTVDTDAIIDTIFVGKGNGV------LPRPVMLPQMINLLVDLWETEGL 525
            F+N+GL RWE  R  W++                   + A  +D DAIID IF  +           P+PV L QM+++LVDLWE EGL
Sbjct:  103 FINEGLLRWEESRATWLKSDTSDSTA-----------KAAIPLDVDAIIDLIFSQRWRNQEGEASSFPQPVPLTQMVDILVDLWEAEGL 180
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BLAST of jgi.p|Trimin1|348392 vs. uniprot
Match: A0A7S3KWA5_9STRA (Hypothetical protein n=2 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3KWA5_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 1.380e-6
Identity = 37/95 (38.95%), Postives = 45/95 (47.37%), Query Frame = 1 
Query:  271 APFVNQGLRRWEAERQRWV-QKGXXXXXXXXXXXXXXXXXRKAQTVDTDAIIDTIFVGK------GNGV---LPRPVMLPQMINLLVDLWETEGL 525
            A FVNQGL RWE  R  W+ ++G                   A  +D D IID +F         GN      PR V LPQM+++L DLWE EGL
Sbjct:  104 ASFVNQGLMRWETARSAWLGERGDSDDTGSSARPT-------AVPLDVDKIIDVLFYASSREGRAGNAKPEKFPRNVPLPQMVDILQDLWEAEGL 191
[Close]
BLAST of jgi.p|Trimin1|348392 vs. uniprot
Match: A0A6S8ZSI1_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6S8ZSI1_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 5.140e-6
Identity = 36/106 (33.96%), Postives = 46/106 (43.40%), Query Frame = 1 
Query:  277 FVNQGLRRWEAERQRWVQKGXXXXXXXXXXXXXXXXX-RKAQTVDTDAIIDTIFV----------------GKG------NGVLPRPVMLPQMINLLVDLWETEGL 525
            FVN GL+RWE  R +W+                     R A  +D D +ID +F                 GKG      +G  P PV L QM+++LVDLWE EGL
Sbjct:   67 FVNVGLQRWEVVRDQWLSTSTTHDATTEKNHSIYKKMQRHAVELDVDEVIDCVFSNRWRQTAQTSPSGKSSGKGIHQKIDDGSFPCPVPLSQMVDILVDLWEAEGL 172
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|348392 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
A0A835Z3H3_9STRA4.180e-81100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D8LBC5_ECTSI1.270e-1547.67Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A4D9DFS2_9STRA5.030e-1237.11Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A7S2E517_9STRA2.090e-836.19Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
W7U1W8_9STRA6.220e-855.32DUF4050 domain-containing protein n=1 Tax=Nannochl... [more]
A0A7S1E125_9STRA3.420e-735.96Hypothetical protein n=1 Tax=Thalassionema nitzsch... [more]
A0A7S2XR72_9STRA4.250e-734.00Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A7S1D623_CYCTE4.510e-737.08Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]
A0A7S3KWA5_9STRA1.380e-638.95Hypothetical protein n=2 Tax=Amphora coffeiformis ... [more]
A0A6S8ZSI1_9STRA5.140e-633.96Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_23contigContig_23:842611..844952 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|348392|estExt_Genemark1.C_Ctg_230098
Max annot lvl2759|Eukaryota
EggNOG OGs2E6JY@1|root,2SD9A@2759|Eukaryota
Evalue3.11e-17
Seed ortholog2880.D8LBC5
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-27_004430.1
TranscriptId348714
TrackFilteredModels1
ProteinId348392
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|348392gene_4959Tribonema minus UTEX_B_3156 geneContig_23 842611..844952 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_4959_1exon_4959_1Tribonema minus UTEX_B_3156 exonContig_23 842611..842641 +
exon_4959_2exon_4959_2Tribonema minus UTEX_B_3156 exonContig_23 844299..844952 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_4959CDS_4959Tribonema minus UTEX_B_3156 CDSContig_23 842611..842641 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_4959UTR3_4959Tribonema minus UTEX_B_3156 three_prime_UTRContig_23 844802..844952 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|348392Trimin1|348392|estExt_Genemark1.C_Ctg_230098Tribonema minus UTEX_B_3156 polypeptideContig_23 842611..844801 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_4959 ID=mRNA_4959|Name=jgi.p|Trimin1|348392|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=685bp|location=Sequence derived from alignment at Contig_23:842611..844952+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGGAAACCCAGGACGTGGAGCGCGACGCGCGCAAGAAGGCGACAGC
AGCGGCGCGGCGGCCCGCCGCCGCCACCACCGCCAACCCCAAAGCGTTTG
CAGTTACCAGACCAACAGCGGCAGCAGCAGCGGCGGCAGCACCGCCACCC
TCGCCAGCGCAACCCAGGCCCTGGGCAGCGCTGCGCCGCCGCAGCATGGC
GGACGTGCAGGCGCTGCCGGCAGCAGCAGCAGCAGCAGCAGCAGCGGACG
GCACGGACGCTGCCGCAGGCGCGCCATTCGTGAACCAGGGGCTGCGGCGC
TGGGAGGCGGAGCGCCAAAGATGGGTGCAGAAGGGGGGGGGCGGAGGCAG
TGCTCAGCAGCAGTGGGGGCGCGCGCCGCCGCCGCCGCGCAAGGCGCAGA
CGGTCGACACGGACGCCATTATTGACACGATCTTCGTGGGCAAGGGCAAC
GGCGTGCTGCCGCGGCCCGTCATGCTGCCGCAGATGATCAACCTGCTCGT
GGACCTGTGGGAGACGGAGGGGCTGTACGACTGAGCGGAGCGCTGACGCA
GGCGGGGTGTACATGCCTACACACCCCCCGTGGTTGCCTCTGCTGATCGC
TGCCTCGCCCCGTTTGTGTGACGGCGCTGCCCCCAGTGAGTCGTGGCAGT
GACGTCCCCCGAGGGAAACGCTTGCTCAACGCTGA
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protein sequence of jgi.p|Trimin1|348392

>Trimin1|348392|estExt_Genemark1.C_Ctg_230098 ID=Trimin1|348392|estExt_Genemark1.C_Ctg_230098|Name=jgi.p|Trimin1|348392|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=178bp
MQETQDVERDARKKATAAARRPAAATTANPKAFAVTRPTAAAAAAAAPPP
SPAQPRPWAALRRRSMADVQALPAAAAAAAAADGTDAAAGAPFVNQGLRR
WEAERQRWVQKGGGGGSAQQQWGRAPPPPRKAQTVDTDAIIDTIFVGKGN
GVLPRPVMLPQMINLLVDLWETEGLYD*
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mRNA from alignment at Contig_23:842611..844952+

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4959 ID=mRNA_4959|Name=jgi.p|Trimin1|348392|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2342bp|location=Sequence derived from alignment at Contig_23:842611..844952+ (Tribonema minus UTEX_B_3156 )
ATGCAGGAAACCCAGGACGTGGAGCGCGACGGTCAGGAATCGGGTTGGCT
GCCATGGTGATCGCCTGATTGATCCAAGCACTGCGACAGCGGTGAGCTTG
AGCTGGATGGCAGATGCATTCAGTGTGATAGGATCTCGGCTTAACAAGGC
GCATCTGGAAGCTACACTCTGAACACAAGAGATCAAAAAATCCCCACAAC
GAAGGCAAGATACTGTGCATTGCAGCTTTAGGGGCGGCAGGAAAGGCGGT
GGCAGCGTCCTGGACCGGGCACAGATCCCAAGCTCTGGCTCTTTGTCGGC
GCCACGCAAGTGGAAAACGGACGCGCAGACGCCTTGAAAGAGACAAGAAA
GCTTGGCAGCTGCTTGAGGAGGGTAAGCGTGAGCGACACGAGGCATGTAT
CAGCTTTGATCGCGCATGATGCGTGCCGTTTTGGGTGCATTCGCCACTGA
GGCCAGCCGCAGCCAGATGTTCAGCAACGCTGGCTTGATGCCTCGACGAC
GAGTTGGAGCAGGTCAACATTGCAAGGCCTGCGTGCCGTCGAAGGTCATC
TGCTGTAATGCTGAGTACCAGCATTCAAAGCAGCCCGACATCATAACGTC
TCCTGGTCAGCGCTTTGACTCATGAGCTGGACGAAGTATTTGATTTTGTG
AGTCCACCTGTAGCCGTCGTCTGTGCCATGTGTACTCGGCATGACGACTG
CAACACCAGCCCTCAGCACAGGTCCTATAGCCTTTTTGTGCCACGACATT
CGTGTTGTGAAAGCGCCTGTATCTGTCTACTTAGTTTTCATAATTTCTGC
TGCTTAGGATCCAATGTGCTGAAGGAAGCTACACTCAAAACTGCCAAATC
TGTGTGGGCAGCTGAAAGAAGAAGTGGCGATGCTTATTCCTATGTTAAAG
CACATCATCATCATACAGTCGTATACAATGACATAACAAGGGTAGCAGAT
GGTACTGAGGGCCAGAAACTTAACTCCTGACGCTTGGGGATCTCGAAATG
CCATGCCAGTCAGTCTTGTGTGCAGTGTGGTTTTCGTCATGGGCGCCTTG
CGCCATAAGCATCATACGCCAAGTGCTTCATCAGCACAGCACAGCCCATG
GCAGCAGCGTCATGACAGTACTGTGCTGGCATCAGTGCTGCCACCGTTTG
CGCACTAGACGCAGACAGGGTTGAGACTCAACTAAACTGATGAAGGGGTG
GGAAAGGCAATGGTGCAGTCGCAGCGGAGGAGCAATGAGGTGTCGATTCG
CTGCGCTGGTGTGCAACAGTCAGCCGAGACCAAGTCAATGAGTGCCTGGC
ACACAACAACACAGGTTGTTGCAGTGCTCAACCCACAAAAGCTTACCACC
CACACCGAAAAGCGCCACAGGCACGGCAAGCGCTGCAAATCGCGTTGCCT
GTTCACAATGTCCTGGTGCACATTGTCTGCCTAACGACATCACATTTACT
TGAACCGCACTACCACTCATTGGTGGCTTCTTGACTGCCTCCTGAGCCGA
AGAGTTGCACTCCGCGGGGATTGCCCAGCCCAGACTGTGTTAGTTGCAGC
AGCAGCATAGTTCATGTGCACGCTGCTCATGCAGCAGCCATATCTGCATT
CAGATCGTTCCCGCTGGCAAGTTCTCAACTGACATAAACCCTCCTCACTC
AGCCACTTCATCTGCTGCCCGCGCCTCCTCTTGACCAGCGCGCAAGAAGG
CGACAGCAGCGGCGCGGCGGCCCGCCGCCGCCACCACCGCCAACCCCAAA
GCGTTTGCAGTTACCAGACCAACAGCGGCAGCAGCAGCGGCGGCAGCACC
GCCACCCTCGCCAGCGCAACCCAGGCCCTGGGCAGCGCTGCGCCGCCGCA
GCATGGCGGACGTGCAGGCGCTGCCGGCAGCAGCAGCAGCAGCAGCAGCA
GCGGACGGCACGGACGCTGCCGCAGGCGCGCCATTCGTGAACCAGGGGCT
GCGGCGCTGGGAGGCGGAGCGCCAAAGATGGGTGCAGAAGGGGGGGGGCG
GAGGCAGTGCTCAGCAGCAGTGGGGGCGCGCGCCGCCGCCGCCGCGCAAG
GCGCAGACGGTCGACACGGACGCCATTATTGACACGATCTTCGTGGGCAA
GGGCAACGGCGTGCTGCCGCGGCCCGTCATGCTGCCGCAGATGATCAACC
TGCTCGTGGACCTGTGGGAGACGGAGGGGCTGTACGACTGAGCGGAGCGC
TGACGCAGGCGGGGTGTACATGCCTACACACCCCCCGTGGTTGCCTCTGC
TGATCGCTGCCTCGCCCCGTTTGTGTGACGGCGCTGCCCCCAGTGAGTCG
TGGCAGTGACGTCCCCCGAGGGAAACGCTTGCTCAACGCTGA
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Coding sequence (CDS) from alignment at Contig_23:842611..844952+

>mRNA_4959 ID=mRNA_4959|Name=jgi.p|Trimin1|348392|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=534bp|location=Sequence derived from alignment at Contig_23:842611..844952+ (Tribonema minus UTEX_B_3156 )
ATGCAGGAAACCCAGGACGTGGAGCGCGACGCGCGCAAGAAGGCGACAGC
AGCGGCGCGGCGGCCCGCCGCCGCCACCACCGCCAACCCCAAAGCGTTTG
CAGTTACCAGACCAACAGCGGCAGCAGCAGCGGCGGCAGCACCGCCACCC
TCGCCAGCGCAACCCAGGCCCTGGGCAGCGCTGCGCCGCCGCAGCATGGC
GGACGTGCAGGCGCTGCCGGCAGCAGCAGCAGCAGCAGCAGCAGCGGACG
GCACGGACGCTGCCGCAGGCGCGCCATTCGTGAACCAGGGGCTGCGGCGC
TGGGAGGCGGAGCGCCAAAGATGGGTGCAGAAGGGGGGGGGCGGAGGCAG
TGCTCAGCAGCAGTGGGGGCGCGCGCCGCCGCCGCCGCGCAAGGCGCAGA
CGGTCGACACGGACGCCATTATTGACACGATCTTCGTGGGCAAGGGCAAC
GGCGTGCTGCCGCGGCCCGTCATGCTGCCGCAGATGATCAACCTGCTCGT
GGACCTGTGGGAGACGGAGGGGCTGTACGACTGA
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