mRNA_495 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|157473
Unique NamemRNA_495
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|157473 vs. uniprot
Match: A0A835YXI8_9STRA (40S ribosomal protein S30 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXI8_9STRA)

HSP 1 Score: 112 bits (280), Expect = 1.580e-31
Identity = 58/58 (100.00%), Postives = 58/58 (100.00%), Query Frame = 1 
Query:    1 MLISLNLSYLLQQVDKQEKKKDPRGRAKKRMQYNRRFVNVVTGVGGKKLGPNSNAAKV 174
            MLISLNLSYLLQQVDKQEKKKDPRGRAKKRMQYNRRFVNVVTGVGGKKLGPNSNAAKV
Sbjct:    1 MLISLNLSYLLQQVDKQEKKKDPRGRAKKRMQYNRRFVNVVTGVGGKKLGPNSNAAKV 58
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BLAST of jgi.p|Trimin1|157473 vs. uniprot
Match: D8LG80_ECTSI (40S ribosomal protein S30 n=2 Tax=PX clade TaxID=569578 RepID=D8LG80_ECTSI)

HSP 1 Score: 83.2 bits (204), Expect = 7.520e-20
Identity = 41/45 (91.11%), Postives = 43/45 (95.56%), Query Frame = 1 
Query:   40 VDKQEKKKDPRGRAKKRMQYNRRFVNVVTGVGGKKLGPNSNAAKV 174
            +DK EKKK PRGRAKKRMQYNRRFVNVVTGVGGK+LGPNSNAAKV
Sbjct:   21 IDKIEKKKQPRGRAKKRMQYNRRFVNVVTGVGGKRLGPNSNAAKV 65
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BLAST of jgi.p|Trimin1|157473 vs. uniprot
Match: K0R2S3_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0R2S3_THAOC)

HSP 1 Score: 77.0 bits (188), Expect = 9.400e-17
Identity = 37/45 (82.22%), Postives = 42/45 (93.33%), Query Frame = 1 
Query:   40 VDKQEKKKDPRGRAKKRMQYNRRFVNVVTGVGGKKLGPNSNAAKV 174
            V+ QEKKK PRGRAKKRMQYNRR+VNVVTG+GGKK+GPNSNA K+
Sbjct:   78 VEAQEKKKQPRGRAKKRMQYNRRYVNVVTGMGGKKVGPNSNADKM 122
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BLAST of jgi.p|Trimin1|157473 vs. uniprot
Match: A0A7S2V4V4_9STRA (Hypothetical protein n=3 Tax=Ochrophyta TaxID=2696291 RepID=A0A7S2V4V4_9STRA)

HSP 1 Score: 76.3 bits (186), Expect = 2.870e-16
Identity = 39/45 (86.67%), Postives = 41/45 (91.11%), Query Frame = 1 
Query:   40 VDKQEKKKDPRGRAKKRMQYNRRFVNVVTGVGGKKLGPNSNAAKV 174
            V+ QEKKK   GRAKKRMQYNRRFVNVVTGVGGKKLGPNSNA+KV
Sbjct:   96 VEAQEKKKKLTGRAKKRMQYNRRFVNVVTGVGGKKLGPNSNASKV 140
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BLAST of jgi.p|Trimin1|157473 vs. uniprot
Match: A0A1E7F7Q1_9STRA (40S ribosomal protein S30 n=4 Tax=Bacillariophyta TaxID=2836 RepID=A0A1E7F7Q1_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 6.010e-15
Identity = 35/46 (76.09%), Postives = 43/46 (93.48%), Query Frame = 1 
Query:   40 VDKQEK-KKDPRGRAKKRMQYNRRFVNVVTGVGGKKLGPNSNAAKV 174
            V+KQE+ KK PRGRAKKR+QYNRR+VNVVTG+GGK++GPNSNA K+
Sbjct:   21 VEKQEEGKKQPRGRAKKRLQYNRRYVNVVTGMGGKRVGPNSNADKM 66
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BLAST of jgi.p|Trimin1|157473 vs. uniprot
Match: A0A4D9D2L7_9STRA (Ubiquitin-like domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D2L7_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 2.740e-14
Identity = 34/45 (75.56%), Postives = 41/45 (91.11%), Query Frame = 1 
Query:   40 VDKQEKKKDPRGRAKKRMQYNRRFVNVVTGVGGKKLGPNSNAAKV 174
            V+KQEK+K PRGRAKKR+ Y+RRF+NV TGVGGK+LGPNSNA K+
Sbjct:   96 VEKQEKRKTPRGRAKKRVLYSRRFLNVATGVGGKRLGPNSNADKM 140
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BLAST of jgi.p|Trimin1|157473 vs. uniprot
Match: A0A8J2X0V5_9STRA (Hypothetical protein n=3 Tax=Pelagomonadales TaxID=54409 RepID=A0A8J2X0V5_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 1.940e-13
Identity = 35/42 (83.33%), Postives = 37/42 (88.10%), Query Frame = 1 
Query:   40 VDKQEKKKDPRGRAKKRMQYNRRFVNVVTGVGGKKLGPNSNA 165
            V+KQEKKK P GRAKKRM YNRRFVNVV GVGGK+ GPNSNA
Sbjct:  110 VEKQEKKKLPTGRAKKRMLYNRRFVNVVAGVGGKRFGPNSNA 151
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BLAST of jgi.p|Trimin1|157473 vs. uniprot
Match: A0A2P6VFJ9_9CHLO (40S ribosomal protein S30 n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6VFJ9_9CHLO)

HSP 1 Score: 66.2 bits (160), Expect = 3.500e-13
Identity = 32/40 (80.00%), Postives = 35/40 (87.50%), Query Frame = 1 
Query:   40 VDKQEKKKDPRGRAKKRMQYNRRFVNVVTGVGGKKLGPNS 159
            V KQEKKK P+GRA+KR+QYNRRFVNVV G GGKK GPNS
Sbjct:   21 VPKQEKKKTPKGRARKRLQYNRRFVNVVVGFGGKKKGPNS 60
[Close]
BLAST of jgi.p|Trimin1|157473 vs. uniprot
Match: A0A2R5GNZ5_9STRA (Ubiquitin n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GNZ5_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 7.840e-13
Identity = 34/46 (73.91%), Postives = 40/46 (86.96%), Query Frame = 1 
Query:   40 VDKQ-EKKKDPRGRAKKRMQYNRRFVNVVTGVGGKKLGPNSNAAKV 174
            V+KQ +KKKDPRGRAKKR+QYNRRFVNVV   GGK LGPN+NA ++
Sbjct:   96 VEKQGDKKKDPRGRAKKRLQYNRRFVNVVRAPGGKTLGPNNNAERI 141
[Close]
BLAST of jgi.p|Trimin1|157473 vs. uniprot
Match: A0A484DSZ2_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484DSZ2_BRELC)

HSP 1 Score: 65.1 bits (157), Expect = 1.820e-12
Identity = 37/46 (80.43%), Postives = 37/46 (80.43%), Query Frame = 1 
Query:   40 VDKQE-KKKDPRGRAKKRMQYNRRFVNVVTGVGGKKLGPNSNAAKV 174
            V KQE  KK   GRAKKR QYNRRFVNVV G GGKKLGPNSNAAKV
Sbjct:   40 VPKQEDSKKALTGRAKKRWQYNRRFVNVVAGSGGKKLGPNSNAAKV 85
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|157473 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YXI8_9STRA1.580e-31100.0040S ribosomal protein S30 n=1 Tax=Tribonema minus ... [more]
D8LG80_ECTSI7.520e-2091.1140S ribosomal protein S30 n=2 Tax=PX clade TaxID=5... [more]
K0R2S3_THAOC9.400e-1782.22Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
A0A7S2V4V4_9STRA2.870e-1686.67Hypothetical protein n=3 Tax=Ochrophyta TaxID=2696... [more]
A0A1E7F7Q1_9STRA6.010e-1576.0940S ribosomal protein S30 n=4 Tax=Bacillariophyta ... [more]
A0A4D9D2L7_9STRA2.740e-1475.56Ubiquitin-like domain-containing protein n=2 Tax=M... [more]
A0A8J2X0V5_9STRA1.940e-1383.33Hypothetical protein n=3 Tax=Pelagomonadales TaxID... [more]
A0A2P6VFJ9_9CHLO3.500e-1380.0040S ribosomal protein S30 n=1 Tax=Micractinium con... [more]
A0A2R5GNZ5_9STRA7.840e-1373.91Ubiquitin n=1 Tax=Hondaea fermentalgiana TaxID=231... [more]
A0A484DSZ2_BRELC1.820e-1280.43Uncharacterized protein n=1 Tax=Bremia lactucae Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_3contigContig_3:1882390..1882566 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|157473|e_gw1.3.337.1
BRITEbr01610,ko00000,ko00001,ko00002,ko03011,ko04121
KEGG ModuleM00177,M00179
KEGG Pathwayko03010,map03010
KEGG koko:K02983
GOsGO:0002181,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0010494,GO:0015935,GO:0019538,GO:0022626,GO:0022627,GO:0031974,GO:0031981,GO:0032991,GO:0034641,GO:0034645,GO:0035770,GO:0036464,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0070013,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904
Preferred nameRPS30
Descriptionstructural constituent of ribosome
COG categoryJ
Max annot lvl2759|Eukaryota
EggNOG OGsKOG0009@1|root,KOG0009@2759|Eukaryota
Evalue1.23e-20
Seed ortholog2880.D8LG80
Hectar predicted targeting categoryno signal peptide or anchor
TranscriptId157795
TrackFilteredModels1
ProteinId157473
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|157473gene_495Tribonema minus UTEX_B_3156 geneContig_3 1882390..1882566 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_495_1exon_495_1Tribonema minus UTEX_B_3156 exonContig_3 1882390..1882566 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_495CDS_495Tribonema minus UTEX_B_3156 CDSContig_3 1882390..1882566 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|157473Trimin1|157473|e_gw1.3.337.1Tribonema minus UTEX_B_3156 polypeptideContig_3 1882390..1882566 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_495 ID=mRNA_495|Name=jgi.p|Trimin1|157473|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=177bp|location=Sequence derived from alignment at Contig_3:1882390..1882566+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCTGATCTCACTGAATCTTTCTTATCTGCTGCAACAGGTCGACAAGCA
GGAGAAGAAGAAGGACCCTCGTGGGCGCGCCAAGAAGCGCATGCAGTACA
ACCGGCGCTTTGTCAATGTTGTGACTGGCGTTGGCGGGAAGAAGCTTGGC
CCGAACTCAAACGCAGCCAAGGTTTAA
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protein sequence of jgi.p|Trimin1|157473

>Trimin1|157473|e_gw1.3.337.1 ID=Trimin1|157473|e_gw1.3.337.1|Name=jgi.p|Trimin1|157473|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=59bp
MLISLNLSYLLQQVDKQEKKKDPRGRAKKRMQYNRRFVNVVTGVGGKKLG
PNSNAAKV*
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mRNA from alignment at Contig_3:1882390..1882566+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_495 ID=mRNA_495|Name=jgi.p|Trimin1|157473|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=177bp|location=Sequence derived from alignment at Contig_3:1882390..1882566+ (Tribonema minus UTEX_B_3156 )
ATGCTGATCTCACTGAATCTTTCTTATCTGCTGCAACAGGTCGACAAGCA
GGAGAAGAAGAAGGACCCTCGTGGGCGCGCCAAGAAGCGCATGCAGTACA
ACCGGCGCTTTGTCAATGTTGTGACTGGCGTTGGCGGGAAGAAGCTTGGC
CCGAACTCAAACGCAGCCAAGGTTTAA
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Coding sequence (CDS) from alignment at Contig_3:1882390..1882566+

>mRNA_495 ID=mRNA_495|Name=jgi.p|Trimin1|157473|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=177bp|location=Sequence derived from alignment at Contig_3:1882390..1882566+ (Tribonema minus UTEX_B_3156 )
ATGCTGATCTCACTGAATCTTTCTTATCTGCTGCAACAGGTCGACAAGCA
GGAGAAGAAGAAGGACCCTCGTGGGCGCGCCAAGAAGCGCATGCAGTACA
ACCGGCGCTTTGTCAATGTTGTGACTGGCGTTGGCGGGAAGAAGCTTGGC
CCGAACTCAAACGCAGCCAAGGTTTAA
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