mRNA_4915 (mRNA) Tribonema minus UTEX_B_3156
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Overview
Homology
BLAST of jgi.p|Trimin1|348372 vs. uniprot
Match: A0A836CFU0_9STRA (DUF1995 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFU0_9STRA) HSP 1 Score: 490 bits (1261), Expect = 1.120e-174 Identity = 253/253 (100.00%), Postives = 253/253 (100.00%), Query Frame = 1
Query: 10 MRAAVQEGLKARCSRMDVELPYGARLGVEGVAKDAPVDVEQSDRELARLFVEMFDPIGDATVVAFRTDKQAAAARNLWGLGSYKGTVQSMEPKKSKVKKSGKKSRAGGFAKKLEAALGDDTEGPSAVVPAGTEVFVLVAPQEKELQMVESLDLGRDCLCILLNARLDGDNNPQRTRLRASFEGVFHLRAIGDASNDELLYRSYPKAWTLARKPKVGPPKVVATFDSRPSAEEVAEAAAEGVAAASKGLFGGLF 768
MRAAVQEGLKARCSRMDVELPYGARLGVEGVAKDAPVDVEQSDRELARLFVEMFDPIGDATVVAFRTDKQAAAARNLWGLGSYKGTVQSMEPKKSKVKKSGKKSRAGGFAKKLEAALGDDTEGPSAVVPAGTEVFVLVAPQEKELQMVESLDLGRDCLCILLNARLDGDNNPQRTRLRASFEGVFHLRAIGDASNDELLYRSYPKAWTLARKPKVGPPKVVATFDSRPSAEEVAEAAAEGVAAASKGLFGGLF
Sbjct: 1 MRAAVQEGLKARCSRMDVELPYGARLGVEGVAKDAPVDVEQSDRELARLFVEMFDPIGDATVVAFRTDKQAAAARNLWGLGSYKGTVQSMEPKKSKVKKSGKKSRAGGFAKKLEAALGDDTEGPSAVVPAGTEVFVLVAPQEKELQMVESLDLGRDCLCILLNARLDGDNNPQRTRLRASFEGVFHLRAIGDASNDELLYRSYPKAWTLARKPKVGPPKVVATFDSRPSAEEVAEAAAEGVAAASKGLFGGLF 253
BLAST of jgi.p|Trimin1|348372 vs. uniprot
Match: A0A6H5JKH9_9PHAE (DUF1995 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKH9_9PHAE) HSP 1 Score: 207 bits (527), Expect = 9.680e-62 Identity = 133/293 (45.39%), Postives = 177/293 (60.41%), Query Frame = 1
Query: 1 VSAMRAAVQEGLKARCSRMDVELPYGARLGVEGVAKD------APVDVEQSDRELARLFVEMFDPIGDATVVAFRTDKQAAAARNLWGLG-SYKGTVQSMEPKKSKVKK--SGKKSRAGGFAKKLEAA-----------------------LGDDTEGPSAVVPAGTEVFVLVAPQEKELQMVESL--DLGRDCLCILLNARL---DGDNNPQRTRLRASFEGVFHLRAIGDASNDELLYRSYPKAWTLARKPKVGPPKVVATFDSRPSAEEVAEAAAEGVAAASKGLFGGLF 768
VS +RAAVQEGLKA+ SRMDV+LP+ ARLGVE +D DVE++DRELARLF+EMFD IGD VVAF TD+ A A +W G YKG V M+P+ +K K G + GFA ++EA+ T + VVP GTEV ++VAP+++EL+ V+ + DLG+ CL +LLNARL D ++ QR FE +FHLR + A N++ LYR+YPK WT+ARKPK+GPPKV++ RP+ E+ A +G AA G+FG +F
Sbjct: 73 VSCLRAAVQEGLKAQQSRMDVDLPFAARLGVETSDEDKDKKKYTAADVERADRELARLFLEMFDVIGDQVVVAFPTDEDAKKAIKVWSKGVPYKGKVTCMDPRPAKGPKLKRGDTNALAGFAMQVEASKKAKXXXXXXXXXXXXXXXXXXXXXXRTGTTARVVPPGTEVLLVVAPKQQELKAVQKMSNDLGQGCLIVLLNARLHQADFFDDEQREFFEQEFESMFHLRPVA-AENEDFLYRAYPKDWTVARKPKLGPPKVLSAQKQRPTEAEILTAVEKGDKAA--GVFGNIF 362
BLAST of jgi.p|Trimin1|348372 vs. uniprot
Match: A0A6V1TW35_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1TW35_HETAK) HSP 1 Score: 162 bits (410), Expect = 1.410e-44 Identity = 104/269 (38.66%), Postives = 156/269 (57.99%), Query Frame = 1
Query: 1 VSAMRAAVQEGLKARCSRMDVELPYGARLGVEGV-----AKDAPVDVEQSDRELARLFVEMFDPIGDATVVAFRTDKQAAAARNLWGLGSYKGTVQSMEPKKSKVKKSGKKSRAGGFAKKLEAALGDDTEGP-SAVVPAGTEVFVLVAPQEKELQMVESL--DLGRDCLCILLNARLDG-----DNNPQRTRLRASFEGVFHLRAIGDASNDELLY-RSYPKAWTLARKPKVGPPKVVATFDSRPSAEEVAEAAAEGVAAASKGLFGGL 765
+S MR ++Q L+A+ SRM VELP GA G+E A VE+SDRELARL VEMF P+G++ V F +D+Q A++ WG Y+GT++++ PKK+K GK+ GGFA ++ A G D GP + V+P GTEV + VAP +K++Q++E L ++G CL +++N R ++ Q+ FE VF ++ I + D LL +++ + W +A+K GPP+V+A P EVA A A++G GGL
Sbjct: 59 ISEMRKSIQAALQAKNSRMAVELPRGADFGMEKADDVKSATQYDGGVEKSDRELARLLVEMFQPLGESLVCTFPSDQQVKKAKSSWG-DQYEGTIKTLTPKKTK---GGKRRGKGGFAAAVKEAEGADAVGPLNGVLPPGTEVVLAVAPSQKDVQVLEKLANEVGMGCLIMIVNGRFWERKDVFQDDEQKQFFDQVFEPVFDIKLIAEPDGDGLLQVKAFGEDWVIAKKQTFGPPRVLAASAGPPGEAEVAAALEASAKLAAEGPLGGL 323
BLAST of jgi.p|Trimin1|348372 vs. uniprot
Match: A0A1Z5KBU0_FISSO (DUF1995 domain-containing protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KBU0_FISSO) HSP 1 Score: 155 bits (393), Expect = 1.830e-42 Identity = 109/250 (43.60%), Postives = 142/250 (56.80%), Query Frame = 1
Query: 1 VSAMRAAVQEGLKARCSRMDVELPYGARLGVEGVA---KDAPV--DVEQSDRELARLFVEMFDPIG-DATVVAFRTDKQAAAARNLWGLGSYKGTVQSMEPKKSKVKKSGKKSRAGGFAKKLEAALGDDTEGPSAVVPAGTEVFVLVAPQEKELQMVESL--DLGRDCLCILLNARLDGDNN---PQRTRL-RASFEGVFHLRAIG-DASNDELLYRSYPKAWTLARKPKVGPPKVVATFDSRPSAEEVA 711
VS R A QE LK R SRMD+E P G + VE A K P D ++SDRELARLFV+MF P+G D V F+ D QA A+NLW G + + + K +++ KKS GFA KL A L ++ +P EV + V+P KEL +VE + +G L +LLN RL +N T+L +FE VFHL A DA+ + LL+R+YPK W LARKP VGPPK + + RP+ EE A
Sbjct: 25 VSKCREATQEALKNRISRMDIEFPVGTKFNVEKSATKSKGPPSLQDFQRSDRELARLFVDMFQPVGGDRIAVIFKDDDQAKQAKNLWK-GDASAASRILALNRGKKQRTAKKSL--GFANKLAAELEEEKSSGPFSLPENIEVALFVSPGPKELVVVEKICDQVGDGTLVVLLNTRLASISNFGSTAATKLFTQTFESVFHLAAAPQDAAPNCLLHRAYPKDWVLARKPAVGPPKSMGRWSQRPTLEECA 271
BLAST of jgi.p|Trimin1|348372 vs. uniprot
Match: W7TUG0_9STRA (DUF1995 domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TUG0_9STRA) HSP 1 Score: 143 bits (361), Expect = 2.520e-37 Identity = 103/263 (39.16%), Postives = 142/263 (53.99%), Query Frame = 1
Query: 1 VSAMRAAVQEGLKARCSRMDVELPYGARLGVEGVAKDAPVD--VEQSDRELARLFVEMFDPIGDATVVAFRTDKQAAAARNLWGLGSYKGTVQSMEPKKSKVKKSGKKSRAGGFAKKLEAALGDDTEGPSAVVPAGTEVFVLVAPQEKELQMVESLD--LGRDCLCILLNARLDGDN----NPQRTRLRASFEGVFHLRAIGDAS----NDELLYRSYPKAWTLARKPKVGPPKVVATFDSRPSAEEVAEAAAEGVAAASKGL 753
++ +R A+Q L+ R SR ++ LP G LGVEG + D E+SDRELARL VE+F PI D TVV F +QA A ++WG K T+ E S +K+ KK++ GG E G +P GTEV ++VAP KEL V L LG D L I+LN L+ + + L + FE VF L + DA+ ++ LLYRSYP W++A+K +GPPK++A+ R + EE A EG +K L
Sbjct: 70 INGLRFAMQRALRDRKSRAEINLPRGTPLGVEGPGAGSADDDKYEKSDRELARLTVELFKPIIDNTVVIFSQGRQARRAASIWGTALVK-TMALDEMTSSAIKRKNKKAKKGGGFGASEGG------GEMTTLPPGTEVCIVVAPGPKELSAVRRLSESLGFDTLLIILNTPLEEASPHLPKDEAVALLSEFEPVFFLNVLNDAAVKTLDNVLLYRSYPGEWSIAQKGALGPPKILASKPERFTKEEKLIALREGAENNAKPL 325
BLAST of jgi.p|Trimin1|348372 vs. uniprot
Match: A0A7S2V579_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V579_9STRA) HSP 1 Score: 143 bits (360), Expect = 3.530e-37 Identity = 99/276 (35.87%), Postives = 150/276 (54.35%), Query Frame = 1
Query: 1 VSAMRAAVQEGLKARCSRMDVELPYGARLGVEGVAKDAPVDV----EQSDRELARLFVEMFDPIGDATVVAFRTDKQAAAARNLWGLGSYKGTVQSMEPKKS--------KVKKSGKKSRAGGFAKKLEAALGDDTEGPSAVVPAGTEVFVLVAPQEKELQMVESL--DLGRDCLCILLNARL---DGDNNPQRTRLRASFEGVFHLRAIGDASNDE----LLYRSYPKAWTLARKPKVGPPKVVATFDSRPSAEEVAEAAAEGVAAASKGLFGGL 765
V+ +R +VQE L+ RCSRM V+LP GA G+E + + V+ ++DRELARL VEMF P+G+ V AF TDKQA A+ W Y+G +Q++ PKK K KK G+KS FA L+ D S+++P GTEV ++VAP K+L VE L ++G L +L NARL + Q+ +F V+ + I + ++ ++YR +PK W +A++ G K++A + + A EV +A + +GL G +
Sbjct: 63 VTELRKSVQEALRDRCSRMHVDLPPGAVFGIENEKELSVVEQVGAGAKNDRELARLLVEMFQPLGENLVCAFSTDKQAKQAKKAWENSFYQGKIQALVPKKDDDLMFSRRKFKK-GRKS----FAAALDEEFNGDNSFASSILPKGTEVLIVVAPTPKDLNTVEKLAKEVGMGTLILLANARLYETGFKDEEQKDFFLNTFNPVYQIEIIPEPDIEKNGGLMMYRGFPKKWVIAKRGNFGV-KILAESEDKFGASEVQKAVEKSSDIEKQGLLGKI 332
BLAST of jgi.p|Trimin1|348372 vs. uniprot
Match: L1JPR1_GUITC (DUF1995 domain-containing protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1JPR1_GUITC) HSP 1 Score: 141 bits (356), Expect = 3.810e-37 Identity = 95/249 (38.15%), Postives = 137/249 (55.02%), Query Frame = 1
Query: 10 MRAAVQEGLKARCSRMDVELPYGARLGVEG--VAKDAPV------DVEQSDRELARLFVEMF--DPIGDATVVAFRTDKQAAAARNLWGLGSYKGTVQSMEPKKSKVKKSGKKSRAGGFAKKLEAALGDDTEGPSAVVPAGTEVFVLVAPQEKELQMVESL--DLGRDCLCILLNARLDG---DNNPQRTRLRASFEGVFHLRAIGDAS-NDELLYRSYPKAWTLARKPKVGPPKVVATFDSRPSAEEV 708
+R A+Q L ++CSRMD+E PYG+ +GVEG A D+ V D + SDRELAR VEMF I VVAF QA A W G++ G V ++ SK K ++ GGF ++ G + ++ +P GTEV ++V+P K+L+ +E + ++G CL IL NARLD ++ QR FE V+HLR S N +L+R++P W +A K+GPPKV+ +PS E +
Sbjct: 16 LRDAMQAALSSKCSRMDIEFPYGSNIGVEGRKTATDSEVPMVMQDDAQASDRELARAMVEMFRGTEIEQNLVVAFMDSPQANKATKRWA-GAFAGKVIVLD---SKQNKRPARAGGGGFGASVK---GTAVKAKTSAIPEGTEVLIVVSPSVKDLKALEQICSEVGMGCLVILANARLDELNYESESQRNFFLNEFERVYHLRPSPSPSWNGGVLFRAFPGDWVVAMPRKIGPPKVLYRSSQKPSTEVI 257
BLAST of jgi.p|Trimin1|348372 vs. uniprot
Match: A0A7S4G6C5_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4G6C5_9EUGL) HSP 1 Score: 141 bits (356), Expect = 1.230e-35 Identity = 98/256 (38.28%), Postives = 145/256 (56.64%), Query Frame = 1
Query: 10 MRAAVQEGLKARCSRMDVELPYGARLGVEG--VAKDAPVDVEQSDRELARLFVEMFDPIGDATVVAFRTDKQAAAARNLWGLGSYKGTVQSMEPKKSKVKKSGKKSRAG-GFAKKLEAALGDDTEGPS-AVVPAGTEVFVLVAPQEKELQMVE--SLDLGRDCLCILLNARLDGDNNP-----QRTRLRASFEGVFHLRAIGDASNDE-----LLYRSYPKAWTLARKPKVGPPKVVATFDSRPSAEEVAEAAAEG 729
++ +VQ L+ R SRM++E+P A+ VE + K +E+SDRELARLFVEMFDPIG++ V+ F ++ A A+ W + KG + +++ S K K + G G KK ++A ++GP V A EV + VAP + +E S G+DC ILLNARL+ + Q L+++F ++ LR + +A E +L +SYP+ W +ARKPK+GPP V+ +PSAEEV AA EG
Sbjct: 188 LKQSVQAALQGRQSRMEIEMPIAAKFAVESGPLGKGRLPAMERSDRELARLFVEMFDPIGESVVLVFNENRLAKEAKRKWA--TTKGAIIALD---SPTGKPAAKPKTGFGVQKKAKSA---PSQGPDPGKVLANAEVIIFVAPTAAQFSTIEKVSQQRGQDCCIILLNARLNMETTKYISPEQEENLKSTFNTIYLLRPLLEADGGEKGVECILLKSYPEGWLVARKPKIGPPVVLLESAEKPSAEEV-RAALEG 434
BLAST of jgi.p|Trimin1|348372 vs. uniprot
Match: B7FWV6_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FWV6_PHATC) HSP 1 Score: 137 bits (344), Expect = 9.920e-35 Identity = 105/254 (41.34%), Postives = 141/254 (55.51%), Query Frame = 1
Query: 1 VSAMRAAVQEGLKARCSRMDVELPYGARLGVE-GVAK----DAPV--DVEQSDRELARLFVEMFDPIG-DATVVAFRTDKQAAAARNLW-GLGSYKGTVQSMEPKKSKVKKSGKKSRAGGFAKKLEAAL-GD-DTEGPSAVVPAGTEVFVLVAPQEKELQMVESL--DLGRDCLCILLNARLDGDNN----PQRTRLRASFEGVFHLRA-IGDASNDELLYRSYPKAWTLARKPKVGPPKVVATFDSRPSAEEV 708
V + R A QE LK R SRMD+E P GA+ +E G A+ + P ++++SDRELARLFV+MF P+G D V F A AR W G + + S++ +KS+ K KK + GFA KL A + G+ D GP + P TEV + VAP KEL VE + ++G + L +LLNARL +N FE VF L A DA+ LLYR+YP W +ARKP VG PK V +P+ ++V
Sbjct: 69 VKSCREATQEALKNRISRMDIEFPVGAKFNIEKGEARRNAGETPTKDELDRSDRELARLFVDMFQPVGGDRIAVVFADVSAADKARKTWKGDTTAICNIVSLDRRKSQASKK-KKKNSKGFAAKLAAEVEGEMDMSGPFRL-PGKTEVALFVAPGPKELITVEKICQEVGMETLVVLLNARLSAVSNFGSAATAELFLGKFESVFSLTAGPQDAAPGCLLYRAYPGRWVVARKPAVGQPKAVLEQSEKPTPDQV 320
BLAST of jgi.p|Trimin1|348372 vs. uniprot
Match: A0A7S2A396_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2A396_TRICV) HSP 1 Score: 132 bits (331), Expect = 1.090e-33 Identity = 92/215 (42.79%), Postives = 117/215 (54.42%), Query Frame = 1
Query: 124 VEQSDRELARLFVEMFDPIGDATV-VAFRTDKQAAAARNLW-GLGSYKGTVQSMEPKKSKVKKSG---------KKSRAGGFAKKLEAALGDDTEGPSAVVPAGTEVFVLVAPQEKELQMVESL--DLGRDCLCILLNARLDGDNN----PQRTRLRASFEGVFHLRAIGDASNDE----LLYRSYPKAWTLARKPKVGPPKVVATFDSRPSAEE 705
+++SDRELARLFVEMF P+G + + VAF + A AAR W G S V + K K G KK R GFA K+ A L DD +P GTEV + V+P KEL +E + ++G L +LLNARL +N R+ F VFHL A A +E LL+RSYP W LARKPKVGPPK + T++ RP+ EE
Sbjct: 19 LDKSDRELARLFVEMFQPVGGSAITVAFANENLAEAARKRWKGDSSAACRVVGVARSKGGSKSGGMXXXXXXXNKKKRPKGFAAKMAAELDDDGSSGPFALPQGTEVALFVSPGPKELVAIERICNEVGMGTLVVLLNARLSRVSNFGTDAARSLFLEEFVPVFHLAA---APQEEAPGCLLHRSYPGKWALARKPKVGPPKTIGTYEGRPTGEE 230 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|348372 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_4915 ID=mRNA_4915|Name=jgi.p|Trimin1|348372|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=791bp|location=Sequence derived from alignment at Contig_23:514554..516878+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. GTATCGGCTATGCGTGCTGCAGTTCAGGAAGGACTGAAGGCCAGGTGCAGback to top protein sequence of jgi.p|Trimin1|348372 >Trimin1|348372|estExt_Genemark1.C_Ctg_230060 ID=Trimin1|348372|estExt_Genemark1.C_Ctg_230060|Name=jgi.p|Trimin1|348372|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=254bp MRAAVQEGLKARCSRMDVELPYGARLGVEGVAKDAPVDVEQSDRELARLFback to top mRNA from alignment at Contig_23:514554..516878+ Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_4915 ID=mRNA_4915|Name=jgi.p|Trimin1|348372|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2325bp|location=Sequence derived from alignment at Contig_23:514554..516878+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_23:514554..516878+ >mRNA_4915 ID=mRNA_4915|Name=jgi.p|Trimin1|348372|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=762bp|location=Sequence derived from alignment at Contig_23:514554..516878+ (Tribonema minus UTEX_B_3156 )back to top |