mRNA_4864 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|348343
Unique NamemRNA_4864
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|348343 vs. uniprot
Match: A0A835Z3B6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3B6_9STRA)

HSP 1 Score: 206 bits (525), Expect = 2.410e-65
Identity = 152/152 (100.00%), Postives = 152/152 (100.00%), Query Frame = 3 
Query:   78 MASEAMQCEGFETEPEPRASDVPSEDARSPEQPEAEEDMPLLFMDGLPRNYLNSAAIASLASLIDSDSDSESGXXXXXXXXDAKPXXXXXXXXXXXXXXXXXXXXXXXXXXXQQGRAPYARPASDDAPSRSSGSARHASAGEAQILLSLWKM 533
            MASEAMQCEGFETEPEPRASDVPSEDARSPEQPEAEEDMPLLFMDGLPRNYLNSAAIASLASLIDSDSDSESGXXXXXXXXDAKPXXXXXXXXXXXXXXXXXXXXXXXXXXXQQGRAPYARPASDDAPSRSSGSARHASAGEAQILLSLWKM
Sbjct:    1 MASEAMQCEGFETEPEPRASDVPSEDARSPEQPEAEEDMPLLFMDGLPRNYLNSAAIASLASLIDSDSDSESGXXXXXXXXDAKPXXXXXXXXXXXXXXXXXXXXXXXXXXXQQGRAPYARPASDDAPSRSSGSARHASAGEAQILLSLWKM 152
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|348343 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835Z3B6_9STRA2.410e-65100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_23contigContig_23:147175..148085 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|348343|estExt_Genemark1.C_Ctg_230017
Hectar predicted targeting categoryother localisation
TranscriptId348665
TrackFilteredModels1
ProteinId348343
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|348343gene_4864Tribonema minus UTEX_B_3156 geneContig_23 147175..148085 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_4864_2exon_4864_2Tribonema minus UTEX_B_3156 exonContig_23 147175..147594 -
exon_4864_1exon_4864_1Tribonema minus UTEX_B_3156 exonContig_23 147930..148085 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_4864UTR3_4864Tribonema minus UTEX_B_3156 three_prime_UTRContig_23 147175..147214 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_4864CDS_4864Tribonema minus UTEX_B_3156 CDSContig_23 147930..148008 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_4864UTR5_4864Tribonema minus UTEX_B_3156 five_prime_UTRContig_23 148009..148085 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|348343Trimin1|348343|estExt_Genemark1.C_Ctg_230017Tribonema minus UTEX_B_3156 polypeptideContig_23 147215..148008 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_4864 ID=mRNA_4864|Name=jgi.p|Trimin1|348343|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=576bp|location=Sequence derived from alignment at Contig_23:147175..148085- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CTCCACCCTCGATGTGGCATAGAGCGTGTGGGACAGGCGGGTGAGGCTGC
GCCTGATTGACGGCAGGGCCACGGTTCATGGCCAGCGAAGCCATGCAATG
CGAGGGCTTTGAAACAGAACCAGAGCCCAGAGCGAGCGATGTGCCATCCG
AAGACGCGCGCAGCCCGGAGCAGCCAGAGGCGGAGGAGGACATGCCGCTG
CTGTTCATGGACGGCCTCCCGCGCAACTACCTCAACAGCGCGGCCATCGC
GTCGCTGGCGTCGCTCATCGACTCCGACTCCGACTCGGAGTCAGGCGGCG
ACGCCGCAGCGCCGGCGCCCGATGCAAAACCCCCTGCTGCCGGCGCAGGA
GGGGGGCACGCTGCTGTGGGGGGCAGGGCTCAGGCAGCGGCGAGCGAGAG
GCGGAGGCAGCGGCAGCAGGGGCGCGCGCCGTATGCGCGGCCGGCGTCGG
ACGATGCACCGTCGCGCAGCAGCGGCAGTGCTCGGCACGCGTCTGCCGGC
GAGGCGCAGATCCTGCTGTCCCTGTGGAAGATGTAAATACAGCACCTTTG
TAAATGGACATTGCAGAATACAGAAG
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protein sequence of jgi.p|Trimin1|348343

>Trimin1|348343|estExt_Genemark1.C_Ctg_230017 ID=Trimin1|348343|estExt_Genemark1.C_Ctg_230017|Name=jgi.p|Trimin1|348343|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=153bp
MASEAMQCEGFETEPEPRASDVPSEDARSPEQPEAEEDMPLLFMDGLPRN
YLNSAAIASLASLIDSDSDSESGGDAAAPAPDAKPPAAGAGGGHAAVGGR
AQAAASERRRQRQQGRAPYARPASDDAPSRSSGSARHASAGEAQILLSLW
KM*
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mRNA from alignment at Contig_23:147175..148085-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4864 ID=mRNA_4864|Name=jgi.p|Trimin1|348343|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=911bp|location=Sequence derived from alignment at Contig_23:147175..148085- (Tribonema minus UTEX_B_3156 )
CTCCACCCTCGATGTGGCATAGAGCGTGTGGGACAGGCGGGTGAGGCTGC
GCCTGATTGACGGCAGGGCCACGGTTCATGGCCAGCGAAGCCATGCAATG
CGAGGGCTTTGAAACAGAACCAGAGCCCAGAGCGAGCGATGTGCCATCCG
AAGACGGTGAGTGGCAGGCGCAATCAGACATTTACGCAATCGGTATGCTC
GAAGTACGCTGCTGGATAGAGAGCGATTGCTGCACTGAAGCAGCACATGC
AAGCAAATATTTCAGCGATGACAGACGAAGCAGCATCACTGCCGCGAACT
GGACCCGCCGCCTCGCTGCAAATATGTCAAAGTGGACGCGAATGTCCACT
TGCCGAAGTCTGGCTGAAAATGCCAGGAAGAGACACAACACGATATGGCA
GTTGCCAAGTAGTACCTGTGCAGACGCAGTGAACCTCCAAGCCTACCCCG
CTCCCCCTCTCCCTCCCTGCGTCCCCCCGCCGCCGCCGCAGCGCGCAGCC
CGGAGCAGCCAGAGGCGGAGGAGGACATGCCGCTGCTGTTCATGGACGGC
CTCCCGCGCAACTACCTCAACAGCGCGGCCATCGCGTCGCTGGCGTCGCT
CATCGACTCCGACTCCGACTCGGAGTCAGGCGGCGACGCCGCAGCGCCGG
CGCCCGATGCAAAACCCCCTGCTGCCGGCGCAGGAGGGGGGCACGCTGCT
GTGGGGGGCAGGGCTCAGGCAGCGGCGAGCGAGAGGCGGAGGCAGCGGCA
GCAGGGGCGCGCGCCGTATGCGCGGCCGGCGTCGGACGATGCACCGTCGC
GCAGCAGCGGCAGTGCTCGGCACGCGTCTGCCGGCGAGGCGCAGATCCTG
CTGTCCCTGTGGAAGATGTAAATACAGCACCTTTGTAAATGGACATTGCA
GAATACAGAAG
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Coding sequence (CDS) from alignment at Contig_23:147175..148085-

>mRNA_4864 ID=mRNA_4864|Name=jgi.p|Trimin1|348343|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=459bp|location=Sequence derived from alignment at Contig_23:147175..148085- (Tribonema minus UTEX_B_3156 )
ATGGCCAGCGAAGCCATGCAATGCGAGGGCTTTGAAACAGAACCAGAGCC
CAGAGCGAGCGATGTGCCATCCGAAGACGCGCGCAGCCCGGAGCAGCCAG
AGGCGGAGGAGGACATGCCGCTGCTGTTCATGGACGGCCTCCCGCGCAAC
TACCTCAACAGCGCGGCCATCGCGTCGCTGGCGTCGCTCATCGACTCCGA
CTCCGACTCGGAGTCAGGCGGCGACGCCGCAGCGCCGGCGCCCGATGCAA
AACCCCCTGCTGCCGGCGCAGGAGGGGGGCACGCTGCTGTGGGGGGCAGG
GCTCAGGCAGCGGCGAGCGAGAGGCGGAGGCAGCGGCAGCAGGGGCGCGC
GCCGTATGCGCGGCCGGCGTCGGACGATGCACCGTCGCGCAGCAGCGGCA
GTGCTCGGCACGCGTCTGCCGGCGAGGCGCAGATCCTGCTGTCCCTGTGG
AAGATGTAA
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