mRNA_486 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|147318
Unique NamemRNA_486
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|147318 vs. uniprot
Match: A0A836CEA1_9STRA (Histone acetyltransferase (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEA1_9STRA)

HSP 1 Score: 380 bits (975), Expect = 1.520e-133
Identity = 184/184 (100.00%), Postives = 184/184 (100.00%), Query Frame = 1
Query:    1 FIQANVNRRQQELNPDVQPDEVVYINVPSNMDTSFDMPPLYKAAFYPSVESSQVRYTSKTVCAYQMHDGQPVLVLVLFCQEYGIDTVEANKGRVYIAYLDTAAFLLPVKARSAVYKDVLAAYLEWVARRGFRYAHIWSCPPRPRVEYMFPCRPVQQLTLTSEQLLDWYLNMLEMRCMRVGISTR 552
            FIQANVNRRQQELNPDVQPDEVVYINVPSNMDTSFDMPPLYKAAFYPSVESSQVRYTSKTVCAYQMHDGQPVLVLVLFCQEYGIDTVEANKGRVYIAYLDTAAFLLPVKARSAVYKDVLAAYLEWVARRGFRYAHIWSCPPRPRVEYMFPCRPVQQLTLTSEQLLDWYLNMLEMRCMRVGISTR
Sbjct:    1 FIQANVNRRQQELNPDVQPDEVVYINVPSNMDTSFDMPPLYKAAFYPSVESSQVRYTSKTVCAYQMHDGQPVLVLVLFCQEYGIDTVEANKGRVYIAYLDTAAFLLPVKARSAVYKDVLAAYLEWVARRGFRYAHIWSCPPRPRVEYMFPCRPVQQLTLTSEQLLDWYLNMLEMRCMRVGISTR 184          
BLAST of jgi.p|Trimin1|147318 vs. uniprot
Match: A0A835Z6R2_9STRA (Histone acetyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6R2_9STRA)

HSP 1 Score: 290 bits (742), Expect = 2.220e-92
Identity = 140/154 (90.91%), Postives = 144/154 (93.51%), Query Frame = 1
Query:   91 MDTSFDMPPLYKAAFYPSVESSQVRYTSKTVCAYQMHDGQPVLVLVLFCQEYGIDTVEANKGRVYIAYLDTAAFLLPVKARSAVYKDVLAAYLEWVARRGFRYAHIWSCPPRPRVEYMFPCRPVQQLTLTSEQLLDWYLNMLEMRCMRVGISTR 552
            M TSFDMP LYKAA YP  ESSQVRYTSKTVCAYQM DGQPVLVLVLFCQEYG+DTVEANKGRVYIAYLDTAAFL PVKARS+V+K+VLAAYLEWVARRGFRYAHIWSCPPRPRVEYMFPCRPVQQLTLTSEQLL WYLNMLE RCMRVGI TR
Sbjct:    1 MGTSFDMPRLYKAALYPLAESSQVRYTSKTVCAYQMVDGQPVLVLVLFCQEYGLDTVEANKGRVYIAYLDTAAFLSPVKARSSVHKEVLAAYLEWVARRGFRYAHIWSCPPRPRVEYMFPCRPVQQLTLTSEQLLGWYLNMLETRCMRVGIRTR 154          
BLAST of jgi.p|Trimin1|147318 vs. uniprot
Match: A0A835Z6P2_9STRA (CBP/p300-type HAT domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6P2_9STRA)

HSP 1 Score: 144 bits (363), Expect = 3.440e-41
Identity = 70/82 (85.37%), Postives = 74/82 (90.24%), Query Frame = 1
Query:    1 FIQANVNRRQQELNPDVQPDEVVYINVPSNMDTSFDMPPLYKAAFYPSVESSQVRYTSKTVCAYQMHDGQPVLVLVLFCQEY 246
            FIQ  VN RQQELNPD+QPDE+V+INVPSNMDTSFDMP LYKAAFYP  ES QVRYTSKTVCAYQ+ DGQPVLVLVLFCQEY
Sbjct:   24 FIQEKVNHRQQELNPDIQPDELVHINVPSNMDTSFDMPRLYKAAFYPLAESFQVRYTSKTVCAYQVLDGQPVLVLVLFCQEY 105          
BLAST of jgi.p|Trimin1|147318 vs. uniprot
Match: A0A835YX18_9STRA (Histone acetyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YX18_9STRA)

HSP 1 Score: 135 bits (339), Expect = 1.690e-33
Identity = 70/173 (40.46%), Postives = 99/173 (57.23%), Query Frame = 1
Query:   25 RQQELNPDVQPDEVVYINVPSNMDTSFDMPPLYKAAFYPSVESS-----QVRYTSKTVCAYQMHDGQPVLVLVLFCQEYGIDTVEANKGRVYIAYLDTAAFLLPVKARSAVYKDVLAAYLEWVARRGFRYAHIWSCPPRPRVEYMFPCRPVQQLTLTSEQLLDWYLNMLEMRC 528
            R QEL  +      ++  VP N   SFD+P + +     S          +  T+K +C YQ+ +GQ VL++VL+C EYG D    N GRVY++YLDT A   P +AR+ +Y++V+AAY++WV RRGF + H+WS PP    EY+    P+ Q TL    LL WY  +L  RC
Sbjct:  220 RLQELKMEQPAGYSIFAVVPVNETVSFDVPAIVRQRCAASSADQVPLPETIPSTNKCICIYQVQEGQAVLLMVLYCHEYGKDAPACNAGRVYMSYLDTVALAKPAEARTTIYQEVVAAYMDWVRRRGFSFMHLWSWPPAKGDEYILVGHPLCQGTLPQPALLQWYRKLLA-RC 391          
BLAST of jgi.p|Trimin1|147318 vs. uniprot
Match: A0A835YXJ3_9STRA (Histone acetyltransferase (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXJ3_9STRA)

HSP 1 Score: 124 bits (312), Expect = 3.330e-33
Identity = 64/129 (49.61%), Postives = 85/129 (65.89%), Query Frame = 1
Query:   40 NPDVQPDEVVYINVPSNMDTSFDMPPLYKAAFYPSVESSQVRYTSKTVCAYQMHDGQPVLVLVLFCQEYGIDTVEANKGRVYIAYLDTAAFL------LPVKARSAVYKDVLAAYLEWVARRGFRYAHI 408
            N ++ P + +++ + SN    F+MPP +KA FYP  ES +V + SKT+CAYQ+ DG+PVL + +FCQEYG D    NK RVY+AYLDTAA+L       P  AR+A Y+ +L AYL  V  RGF  AHI
Sbjct:   21 NSNLLPAQRIHVRLASN----FNMPPAFKATFYPEAESCKVPFVSKTICAYQLQDGEPVLAMAMFCQEYGNDAPAGNKRRVYVAYLDTAAYLDTAPNLAPGPARTATYQAMLQAYLARVQPRGFTAAHI 145          
BLAST of jgi.p|Trimin1|147318 vs. uniprot
Match: A0A835ZGH1_9STRA (Histone acetyltransferase (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZGH1_9STRA)

HSP 1 Score: 130 bits (327), Expect = 9.130e-32
Identity = 72/188 (38.30%), Postives = 104/188 (55.32%), Query Frame = 1
Query:    1 FIQANVNRRQQELNPDVQPDEVVYINVPSNMDTSFDMPPLYKAAFYPSVESS-------QVRYTSKTVCAYQMHDGQPVLVLVLFCQEYGIDTVEANKGRVYIAYLDTAAFLLPVKARSAVYKDVLAAYLEWVARRGFRYAHIWSCPPRPRVEYMFPCRPVQQLTLTSEQLLDWYLNMLEMRCMRVGI 543
            FI+ +V RR  EL     P  +  I V S++  + D+  + +  F P   +        ++ Y SK +C +Q  DG  V +  ++ QE+G D    N  RVY+AYLD+  +  P  AR+ VY ++LAAYL+W  RRGFR AHIWSCPP+    ++F   P  Q T T E+L+ WY  ML  RC  +G+
Sbjct:  413 FIELHVLRRLDELGMPPPPGSIS-IRVVSSITATHDVSSVVRRTFKPGGGAPPGACIPRELSYASKALCMFQCIDGAEVCLFSMYVQEHGADAPSFNARRVYVAYLDSVEYFRPRAARTHVYHEILAAYLDWARRRGFRTAHIWSCPPQRGNNFIFWAHPEHQKTPTRERLMTWYRLMLR-RCEALGV 598          
BLAST of jgi.p|Trimin1|147318 vs. uniprot
Match: A0A835YQL1_9STRA (Histone acetyltransferase (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQL1_9STRA)

HSP 1 Score: 120 bits (300), Expect = 1.070e-30
Identity = 64/164 (39.02%), Postives = 94/164 (57.32%), Query Frame = 1
Query:   67 VYINVPSNMDTSFDMPPLYKAAFY--PSVE-SSQVRYTSKTVCAYQMHDGQPVLVLVLFCQEYGIDTVEANKGRVYIAYLDTAAFLLPVKARSAVYKDVLAAYLEWVARRGFRYAHIWSCPPRPRVEYMFPC--RPVQQLTLTSEQLLDWYLNMLEMRCMRVGI 543
            + + + SN   +  +PP  +A F   P V+    + YTSK +C +Q+ +G  V+ L+L+  EYG D+   N+GRVY++YLD+  ++ P   RS VYK VLAAY +WV RRGF   H+WS P     E+ + C   P    TL    L  WY +++E +C R GI
Sbjct:   30 IAVRLVSNCQKATSIPPPMQATFCTAPGVDLPPSILYTSKALCLFQLINGAWVMSLMLYSYEYGDDSPACNRGRVYLSYLDSVTYIQPYTCRSVVYKTVLAAYFDWVRRRGFSTVHLWSAPASNVKEFAYICWCHPQHHATLDQTALRQWYGDIVE-QCQRRGI 192          
BLAST of jgi.p|Trimin1|147318 vs. uniprot
Match: A0A836CK84_9STRA (Histone acetyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CK84_9STRA)

HSP 1 Score: 116 bits (290), Expect = 2.720e-29
Identity = 60/155 (38.71%), Postives = 91/155 (58.71%), Query Frame = 1
Query:    1 FIQANVNRRQQELNPDVQPDEVVYINVPSNMDTSFDMPPLY-KAAFYPSVESSQ------VRYTSKTVCAYQMHDGQPVLVLVLFCQEYGIDTVEANKGRVYIAYLDTAAFLLPVKARSAVYKDVLAAYLEWVARRGFRYAHIWSCPPRPRVEYM 444
            FI+  V+ R QEL        +++  VP N    + +PPL  +     + + SQ      + YT+K  C +Q+ +GQ VL +VL C+E+G      N GRVY++YLDT A   P +AR+ +Y++V+AAY++WV RRGFR+ H+WS P     EY+
Sbjct:   26 FIKERVDNRLQELEMQQPAGYIIFAVVPINETVYYHVPPLVCERCAVSTADQSQAPPPETIPYTNKCTCIHQVQEGQAVLFMVLCCREHGASA--CNAGRVYLSYLDTVALAKPAEARTTIYQEVVAAYMDWVRRRGFRFVHLWSWPSAEGDEYI 178          
BLAST of jgi.p|Trimin1|147318 vs. uniprot
Match: A0A6H5L4V8_9PHAE (Histone acetyltransferase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4V8_9PHAE)

HSP 1 Score: 123 bits (309), Expect = 2.850e-29
Identity = 56/131 (42.75%), Postives = 85/131 (64.89%), Query Frame = 1
Query:  160 VRYTSKTVCAYQMHDGQPVLVLVLFCQEYGIDTVEANKGRVYIAYLDTAAFLLPVKARSAVYKDVLAAYLEWVARRGFRYAHIWSCPPRPRVEYMFPCRPVQQLTLTSEQLLDWYLNMLEMRCMRVGISTR 552
            ++Y SK +  +Q  DG  V +  ++ QEYG D    N  R YI+YLD+  +  P K R+AVY ++L AYL+W+ RRGF+ AHIWSCPP+    ++F C P+ Q T T ++L  WY NML+ R +++G++ +
Sbjct: 1440 LKYRSKALSMFQRVDGVEVCLFSMYVQEYGADAPYFNARRAYISYLDSVEYFRPRKHRTAVYHEILVAYLDWLRRRGFKAAHIWSCPPQRGNNFIFWCHPLHQKTPTRDRLSGWYGNMLK-RAVQLGVAAK 1569          
BLAST of jgi.p|Trimin1|147318 vs. uniprot
Match: A0A835YPS5_9STRA (Histone acetyltransferase (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPS5_9STRA)

HSP 1 Score: 114 bits (285), Expect = 1.870e-28
Identity = 59/145 (40.69%), Postives = 81/145 (55.86%), Query Frame = 1
Query:   85 SNMDTSFDMPPLYKAAFY--PSVESSQ-VRYTSKTVCAYQMHDGQPVLVLVLFCQEYGIDTVEANKGRVYIAYLDTAAFLLPVKARSAVYKDVLAAYLEWVARRGFRYAHIWSCPPRPRVEYMFPC--RPVQQLTLTSEQLLDWY 504
            SN   +  +PP  +A F   P V+  + + YTSK +C +Q+ DG  V+  +L+  EYG D    N+GRVY++YLD+  ++ P   RS VYK VLAAY +WV RRGF   H+WS P     E+ + C   P    TL    L  WY
Sbjct:   36 SNCQKATSIPPPMQATFCAAPGVDLPRSILYTSKALCLFQLIDGAWVMSFMLYTYEYGDDAPACNRGRVYLSYLDSVPYIQPYTCRSVVYKTVLAAYFDWVRRRGFSTVHLWSAPASTLREFAYICWCHPQHHATLDQPALRQWY 180          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|147318 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CEA1_9STRA1.520e-133100.00Histone acetyltransferase (Fragment) n=1 Tax=Tribo... [more]
A0A835Z6R2_9STRA2.220e-9290.91Histone acetyltransferase n=1 Tax=Tribonema minus ... [more]
A0A835Z6P2_9STRA3.440e-4185.37CBP/p300-type HAT domain-containing protein n=1 Ta... [more]
A0A835YX18_9STRA1.690e-3340.46Histone acetyltransferase n=1 Tax=Tribonema minus ... [more]
A0A835YXJ3_9STRA3.330e-3349.61Histone acetyltransferase (Fragment) n=1 Tax=Tribo... [more]
A0A835ZGH1_9STRA9.130e-3238.30Histone acetyltransferase (Fragment) n=1 Tax=Tribo... [more]
A0A835YQL1_9STRA1.070e-3039.02Histone acetyltransferase (Fragment) n=1 Tax=Tribo... [more]
A0A836CK84_9STRA2.720e-2938.71Histone acetyltransferase n=1 Tax=Tribonema minus ... [more]
A0A6H5L4V8_9PHAE2.850e-2942.75Histone acetyltransferase n=1 Tax=Ectocarpus sp. C... [more]
A0A835YPS5_9STRA1.870e-2840.69Histone acetyltransferase (Fragment) n=1 Tax=Tribo... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_3contigContig_3:1837256..1837807 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|147318|gw1.3.330.1
BRITEko00000,ko00001,ko01000,ko03000,ko03029,ko03036
KEGG Pathwayko04024,ko04066,ko04068,ko04110,ko04310,ko04330,ko04350,ko04520,ko04630,ko04720,ko04916,ko04919,ko04922,ko05016,ko05152,ko05161,ko05164,ko05165,ko05166,ko05167,ko05168,ko05169,ko05200,ko05203,ko05206,ko05211,ko05215,map04024,map04066,map04068,map04110,map04310,map04330,map04350,map04520,map04630,map04720,map04916,map04919,map04922,map05016,map05152,map05161,map05164,map05165,map05166,map05167,map05168,map05169,map05200,map05203,map05206,map05211,map05215
KEGG koko:K04498
EC2.3.1.48
Descriptionacetylation-dependent protein binding
COG categoryK
Max annot lvl4776|Peronosporales
EggNOG OGsCOG5076@1|root,KOG1474@2759|Eukaryota,KOG1778@2759|Eukaryota,3QEIK@4776|Peronosporales
Evalue7.17e-29
Seed ortholog4792.ETI43296
Hectar predicted targeting categoryother localisation
TranscriptId147640
TrackFilteredModels1
ProteinId147318
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|147318gene_486Tribonema minus UTEX_B_3156 geneContig_3 1837256..1837807 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_486_1exon_486_1Tribonema minus UTEX_B_3156 exonContig_3 1837256..1837807 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_486CDS_486Tribonema minus UTEX_B_3156 CDSContig_3 1837256..1837807 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|147318Trimin1|147318|gw1.3.330.1Tribonema minus UTEX_B_3156 polypeptideContig_3 1837256..1837807 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_486 ID=mRNA_486|Name=jgi.p|Trimin1|147318|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=552bp|location=Sequence derived from alignment at Contig_3:1837256..1837807- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
TTCATACAGGCGAACGTCAACCGCCGCCAGCAGGAGCTCAATCCCGACGT
CCAGCCCGACGAGGTCGTGTACATCAATGTGCCCAGCAATATGGACACTA
GCTTTGACATGCCGCCCCTGTACAAGGCAGCGTTCTACCCTTCCGTAGAG
TCATCTCAGGTGCGCTACACCAGCAAGACGGTGTGCGCGTACCAGATGCA
CGACGGTCAGCCAGTGCTGGTGCTGGTGCTCTTTTGCCAGGAGTACGGCA
TCGACACCGTGGAGGCCAACAAAGGTCGCGTTTACATCGCGTATCTGGAC
ACAGCAGCCTTCCTCTTGCCAGTCAAAGCTCGCTCCGCCGTGTACAAGGA
CGTACTGGCAGCGTACCTGGAGTGGGTGGCACGGCGCGGGTTCAGGTACG
CGCACATCTGGTCCTGTCCGCCCCGGCCAAGGGTGGAGTACATGTTCCCC
TGCCGCCCAGTGCAGCAGCTGACCCTCACATCGGAGCAGCTGCTGGACTG
GTACCTCAATATGCTGGAAATGCGCTGCATGCGGGTGGGCATCAGCACAC
GC
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protein sequence of jgi.p|Trimin1|147318

>Trimin1|147318|gw1.3.330.1 ID=Trimin1|147318|gw1.3.330.1|Name=jgi.p|Trimin1|147318|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=184bp
FIQANVNRRQQELNPDVQPDEVVYINVPSNMDTSFDMPPLYKAAFYPSVE
SSQVRYTSKTVCAYQMHDGQPVLVLVLFCQEYGIDTVEANKGRVYIAYLD
TAAFLLPVKARSAVYKDVLAAYLEWVARRGFRYAHIWSCPPRPRVEYMFP
CRPVQQLTLTSEQLLDWYLNMLEMRCMRVGISTR
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mRNA from alignment at Contig_3:1837256..1837807-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_486 ID=mRNA_486|Name=jgi.p|Trimin1|147318|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=552bp|location=Sequence derived from alignment at Contig_3:1837256..1837807- (Tribonema minus UTEX_B_3156 )
TTCATACAGGCGAACGTCAACCGCCGCCAGCAGGAGCTCAATCCCGACGT CCAGCCCGACGAGGTCGTGTACATCAATGTGCCCAGCAATATGGACACTA GCTTTGACATGCCGCCCCTGTACAAGGCAGCGTTCTACCCTTCCGTAGAG TCATCTCAGGTGCGCTACACCAGCAAGACGGTGTGCGCGTACCAGATGCA CGACGGTCAGCCAGTGCTGGTGCTGGTGCTCTTTTGCCAGGAGTACGGCA TCGACACCGTGGAGGCCAACAAAGGTCGCGTTTACATCGCGTATCTGGAC ACAGCAGCCTTCCTCTTGCCAGTCAAAGCTCGCTCCGCCGTGTACAAGGA CGTACTGGCAGCGTACCTGGAGTGGGTGGCACGGCGCGGGTTCAGGTACG CGCACATCTGGTCCTGTCCGCCCCGGCCAAGGGTGGAGTACATGTTCCCC TGCCGCCCAGTGCAGCAGCTGACCCTCACATCGGAGCAGCTGCTGGACTG GTACCTCAATATGCTGGAAATGCGCTGCATGCGGGTGGGCATCAGCACAC GC
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Coding sequence (CDS) from alignment at Contig_3:1837256..1837807-

>mRNA_486 ID=mRNA_486|Name=jgi.p|Trimin1|147318|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=552bp|location=Sequence derived from alignment at Contig_3:1837256..1837807- (Tribonema minus UTEX_B_3156 )
TTCATACAGGCGAACGTCAACCGCCGCCAGCAGGAGCTCAATCCCGACGT
CCAGCCCGACGAGGTCGTGTACATCAATGTGCCCAGCAATATGGACACTA
GCTTTGACATGCCGCCCCTGTACAAGGCAGCGTTCTACCCTTCCGTAGAG
TCATCTCAGGTGCGCTACACCAGCAAGACGGTGTGCGCGTACCAGATGCA
CGACGGTCAGCCAGTGCTGGTGCTGGTGCTCTTTTGCCAGGAGTACGGCA
TCGACACCGTGGAGGCCAACAAAGGTCGCGTTTACATCGCGTATCTGGAC
ACAGCAGCCTTCCTCTTGCCAGTCAAAGCTCGCTCCGCCGTGTACAAGGA
CGTACTGGCAGCGTACCTGGAGTGGGTGGCACGGCGCGGGTTCAGGTACG
CGCACATCTGGTCCTGTCCGCCCCGGCCAAGGGTGGAGTACATGTTCCCC
TGCCGCCCAGTGCAGCAGCTGACCCTCACATCGGAGCAGCTGCTGGACTG
GTACCTCAATATGCTGGAAATGCGCTGCATGCGGGTGGGCATCAGCACAC
GC
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